RNA–Protein interactions for RNA: ENST00000622516.4

CUX1-221, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,990 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-221ENST00000622516 METTL6Q8TCB7 284 aa10.48□□□□□ -0.73
CUX1-221ENST00000622516 GATA6Q92908 595 aa10.48□□□□□ -0.73
CUX1-221ENST00000622516 EGFL8Q99944 293 aa10.48□□□□□ -0.73
CUX1-221ENST00000622516 SH3GL3Q99963 347 aa10.48□□□□□ -0.73
CUX1-221ENST00000622516 SAGE1Q9NXZ1 904 aa10.48□□□□□ -0.73
CUX1-221ENST00000622516 ANGPT2O15123 496 aa10.48□□□□□ -0.73
CUX1-221ENST00000622516 FFAR2O15552 330 aa10.48□□□□□ -0.73
CUX1-221ENST00000622516 HTRA2O43464 458 aaPredicted RBP10.48□□□□□ -0.73
CUX1-221ENST00000622516 IGSF6O95976 241 aa10.48□□□□□ -0.73
CUX1-221ENST00000622516 LINC00271P0C7V0 271 aa10.48□□□□□ -0.73
CUX1-221ENST00000622516 LHCGRP22888 699 aa10.48□□□□□ -0.73
CUX1-221ENST00000622516 PSMA3P25788 255 aa10.48□□□□□ -0.73
CUX1-221ENST00000622516 SLC7A9P82251 487 aa10.48□□□□□ -0.73
CUX1-221ENST00000622516 GK3PQ14409 553 aa10.48□□□□□ -0.73
CUX1-221ENST00000622516 MAPRE2Q15555 327 aa10.48□□□□□ -0.73
CUX1-221ENST00000622516 SLC5A9Q2M3M2 681 aa10.48□□□□□ -0.73
CUX1-221ENST00000622516 SLC44A4Q53GD3 710 aa10.48□□□□□ -0.73
CUX1-221ENST00000622516 SGO1Q5FBB7 561 aa10.48□□□□□ -0.73
CUX1-221ENST00000622516 FBXL19Q6PCT2 694 aa10.48□□□□□ -0.73
CUX1-221ENST00000622516 LILRA6Q6PI73 481 aa10.48□□□□□ -0.73
CUX1-221ENST00000622516 IL27RAQ6UWB1 636 aa10.48□□□□□ -0.73
CUX1-221ENST00000622516 SNX20Q7Z614 316 aa10.48□□□□□ -0.73
CUX1-221ENST00000622516 FNDC5Q8NAU1 212 aa10.48□□□□□ -0.73
CUX1-221ENST00000622516 ZNF784Q8NCA9 323 aaPredicted RBP10.48□□□□□ -0.73
CUX1-221ENST00000622516 ZNF483Q8TF39 744 aaPredicted RBP10.48□□□□□ -0.73
CUX1-221ENST00000622516 CYB5D2Q8WUJ1 264 aa10.48□□□□□ -0.73
CUX1-221ENST00000622516 SKA2Q8WVK7 121 aaPredicted RBP10.48□□□□□ -0.73
CUX1-221ENST00000622516 ING5Q8WYH8 240 aa10.48□□□□□ -0.73
CUX1-221ENST00000622516 ASB2Q96Q27 587 aa10.48□□□□□ -0.73
CUX1-221ENST00000622516 BBS2Q9BXC9 721 aa10.48□□□□□ -0.73
CUX1-221ENST00000622516 ELOVL2Q9NXB9 296 aa10.48□□□□□ -0.73
CUX1-221ENST00000622516 DTNAQ9Y4J8 743 aa10.48□□□□□ -0.73
CUX1-221ENST00000622516 NOTCH4Q99466 2003 aa10.48□□□□□ -0.73
CUX1-221ENST00000622516 A6NHS1 94 aa10.47□□□□□ -0.73
CUX1-221ENST00000622516 TPD52L2O43399 206 aaKnown RBP10.47□□□□□ -0.73
CUX1-221ENST00000622516 CYBBP04839 570 aa10.47□□□□□ -0.73
CUX1-221ENST00000622516 LYNP07948 512 aa10.47□□□□□ -0.73
CUX1-221ENST00000622516 VCLP18206 1134 aa10.47□□□□□ -0.73
CUX1-221ENST00000622516 ITGALP20701 1170 aa10.47□□□□□ -0.73
CUX1-221ENST00000622516 SERPINA4P29622 427 aa10.47□□□□□ -0.73
CUX1-221ENST00000622516 MRPS35P82673 323 aaKnown RBP10.47□□□□□ -0.73
CUX1-221ENST00000622516 PTSQ03393 145 aa10.47□□□□□ -0.73
CUX1-221ENST00000622516 NRF1Q16656 503 aa10.47□□□□□ -0.73
CUX1-221ENST00000622516 ATP13A5Q4VNC0 1218 aa10.47□□□□□ -0.73
CUX1-221ENST00000622516 CMPK2Q5EBM0 449 aa10.47□□□□□ -0.73
CUX1-221ENST00000622516 FAM217AQ8IXS0 508 aa10.47□□□□□ -0.73
CUX1-221ENST00000622516 OR4F6Q8NGB9 312 aa10.47□□□□□ -0.73
CUX1-221ENST00000622516 OR56A4Q8NGH8 313 aa10.47□□□□□ -0.73
CUX1-221ENST00000622516 LRTOMTQ8WZ04 291 aa10.47□□□□□ -0.73
CUX1-221ENST00000622516 TBRG4Q969Z0 631 aaKnown RBP eCLIP10.47□□□□□ -0.736e-7■■■■■ 53.4
CUX1-221ENST00000622516 ASB9Q96DX5 294 aa10.47□□□□□ -0.73
CUX1-221ENST00000622516 C11orf49Q9H6J7 331 aa10.47□□□□□ -0.73
CUX1-221ENST00000622516 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP10.47□□□□□ -0.73
CUX1-221ENST00000622516 NUP214P35658 2090 aaPredicted RBP10.47□□□□□ -0.73
CUX1-221ENST00000622516 NME4O00746 187 aa10.47□□□□□ -0.73
CUX1-221ENST00000622516 PER2O15055 1255 aa10.47□□□□□ -0.73
CUX1-221ENST00000622516 LATS1O95835 1130 aa10.47□□□□□ -0.73
CUX1-221ENST00000622516 ACRV1P26436 265 aa10.47□□□□□ -0.73
CUX1-221ENST00000622516 PPM1AP35813 382 aa10.47□□□□□ -0.73
CUX1-221ENST00000622516 GGT5P36269 586 aa10.47□□□□□ -0.73
CUX1-221ENST00000622516 GRIA3P42263 894 aa10.47□□□□□ -0.73
CUX1-221ENST00000622516 MYLK3Q32MK0 819 aa10.47□□□□□ -0.73
CUX1-221ENST00000622516 RABL3Q5HYI8 236 aa10.47□□□□□ -0.73
CUX1-221ENST00000622516 PAGE3Q5JUK9 113 aa10.47□□□□□ -0.73
CUX1-221ENST00000622516 C6orf10Q5SRN2 563 aa10.47□□□□□ -0.73
CUX1-221ENST00000622516 MFSD4BQ5TF39 518 aa10.47□□□□□ -0.73
CUX1-221ENST00000622516 Q6ZSR9 355 aa10.47□□□□□ -0.73
CUX1-221ENST00000622516 GOLGA7Q7Z5G4 137 aa10.47□□□□□ -0.73
CUX1-221ENST00000622516 AMIGO2Q86SJ2 522 aa10.47□□□□□ -0.73
CUX1-221ENST00000622516 ELMOD1Q8N336 334 aa10.47□□□□□ -0.73
CUX1-221ENST00000622516 STON2Q8WXE9 905 aa10.47□□□□□ -0.73
CUX1-221ENST00000622516 MTFMTQ96DP5 389 aaKnown RBP10.47□□□□□ -0.73
CUX1-221ENST00000622516 DCUN1D1Q96GG9 259 aa10.47□□□□□ -0.73
CUX1-221ENST00000622516 ZSWIM3Q96MP5 696 aa10.47□□□□□ -0.73
CUX1-221ENST00000622516 YIPF3Q9GZM5 350 aa10.47□□□□□ -0.73
CUX1-221ENST00000622516 IPPKQ9H8X2 491 aa10.47□□□□□ -0.73
CUX1-221ENST00000622516 SDR39U1Q9NRG7 319 aaPredicted RBP10.47□□□□□ -0.73
CUX1-221ENST00000622516 FARSBQ9NSD9 589 aaKnown RBP10.47□□□□□ -0.73
CUX1-221ENST00000622516 SCOCQ9UIL1 159 aa10.47□□□□□ -0.73
CUX1-221ENST00000622516 RIMS3Q9UJD0 308 aa10.47□□□□□ -0.73
CUX1-221ENST00000622516 USP22Q9UPT9 525 aa10.47□□□□□ -0.73
CUX1-221ENST00000622516 NDUFAF1Q9Y375 327 aa10.47□□□□□ -0.73
CUX1-221ENST00000622516 GPR45Q9Y5Y3 372 aa10.47□□□□□ -0.73
CUX1-221ENST00000622516 SPEGQ15772 3267 aa10.47□□□□□ -0.73
CUX1-221ENST00000622516 ZNF839A8K0R7 811 aa10.47□□□□□ -0.73
CUX1-221ENST00000622516 OR7A17O14581 309 aa10.47□□□□□ -0.73
CUX1-221ENST00000622516 STX16O14662 325 aa10.47□□□□□ -0.73
CUX1-221ENST00000622516 KLK8O60259 260 aa10.47□□□□□ -0.73
CUX1-221ENST00000622516 SYNCRIPO60506 623 aaKnown RBP10.47□□□□□ -0.73
CUX1-221ENST00000622516 TPST1O60507 370 aa10.47□□□□□ -0.73
CUX1-221ENST00000622516 ADH1AP07327 375 aa10.47□□□□□ -0.73
CUX1-221ENST00000622516 UROSP10746 265 aa10.47□□□□□ -0.73
CUX1-221ENST00000622516 FOLH1Q04609 750 aa10.47□□□□□ -0.73
CUX1-221ENST00000622516 ABRAXAS2Q15018 415 aa10.47□□□□□ -0.73
CUX1-221ENST00000622516 TIGD2Q4W5G0 525 aa10.47□□□□□ -0.73
CUX1-221ENST00000622516 RBFAQ8N0V3 343 aa10.47□□□□□ -0.73
CUX1-221ENST00000622516 STK40Q8N2I9 435 aa10.47□□□□□ -0.73
CUX1-221ENST00000622516 ICA1LQ8NDH6 482 aa10.47□□□□□ -0.73
CUX1-221ENST00000622516 SCAMP4Q969E2 229 aa10.47□□□□□ -0.73
CUX1-221ENST00000622516 TMEM74Q96NL1 305 aa10.47□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 47.4 ms