RNA–Protein interactions for RNA: ENST00000607092.1

CUX1-220, Transcript of cut like homeobox 1, humanhuman

TSL 3

Gene CUX1, Length 559 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-220ENST00000607092 STX1AQ16623 288 aa6.17□□□□□ -1.42
CUX1-220ENST00000607092 LONRF2Q1L5Z9 754 aa6.17□□□□□ -1.42
CUX1-220ENST00000607092 SMTNL2Q2TAL5 461 aa6.17□□□□□ -1.42
CUX1-220ENST00000607092 ZRANB3Q5FWF4 1079 aa6.17□□□□□ -1.42
CUX1-220ENST00000607092 LDLRAP1Q5SW96 308 aa6.17□□□□□ -1.42
CUX1-220ENST00000607092 LYPLAL1Q5VWZ2 237 aa6.17□□□□□ -1.42
CUX1-220ENST00000607092 CYP4V2Q6ZWL3 525 aaPredicted RBP6.17□□□□□ -1.42
CUX1-220ENST00000607092 BZW1Q7L1Q6 419 aaKnown RBP6.17□□□□□ -1.42
CUX1-220ENST00000607092 AMZ2Q86W34 360 aa6.17□□□□□ -1.42
CUX1-220ENST00000607092 OOSP2Q86WS3 158 aa6.17□□□□□ -1.42
CUX1-220ENST00000607092 VSIG1Q86XK7 387 aa6.17□□□□□ -1.42
CUX1-220ENST00000607092 TMEM126BQ8IUX1 230 aa6.17□□□□□ -1.42
CUX1-220ENST00000607092 ARFGAP1Q8N6T3 406 aa6.17□□□□□ -1.42
CUX1-220ENST00000607092 GLIS1Q8NBF1 620 aa6.17□□□□□ -1.42
CUX1-220ENST00000607092 KCTD6Q8NC69 237 aa6.17□□□□□ -1.42
CUX1-220ENST00000607092 CCNYQ8ND76 341 aa6.17□□□□□ -1.42
CUX1-220ENST00000607092 GDAP1Q8TB36 358 aa6.17□□□□□ -1.42
CUX1-220ENST00000607092 FAM71BQ8TC56 605 aa6.17□□□□□ -1.42
CUX1-220ENST00000607092 MR1Q95460 341 aa6.17□□□□□ -1.42
CUX1-220ENST00000607092 HDAC11Q96DB2 347 aa6.17□□□□□ -1.42
CUX1-220ENST00000607092 SGSM3Q96HU1 749 aa6.17□□□□□ -1.42
CUX1-220ENST00000607092 VPS50Q96JG6 964 aa6.17□□□□□ -1.42
CUX1-220ENST00000607092 NSMCE3Q96MG7 304 aa6.17□□□□□ -1.42
CUX1-220ENST00000607092 C5orf34Q96MH7 638 aa6.17□□□□□ -1.42
CUX1-220ENST00000607092 AGAP2Q99490 1192 aa6.17□□□□□ -1.42
CUX1-220ENST00000607092 SYT11Q9BT88 431 aa6.17□□□□□ -1.42
CUX1-220ENST00000607092 NUP85Q9BW27 656 aa6.17□□□□□ -1.42
CUX1-220ENST00000607092 ISCUQ9H1K1 167 aa6.17□□□□□ -1.42
CUX1-220ENST00000607092 ALG2Q9H553 416 aa6.17□□□□□ -1.42
CUX1-220ENST00000607092 HAUS4Q9H6D7 363 aa6.17□□□□□ -1.42
CUX1-220ENST00000607092 CBX8Q9HC52 389 aa6.17□□□□□ -1.42
CUX1-220ENST00000607092 AGPAT4Q9NRZ5 378 aa6.17□□□□□ -1.42
CUX1-220ENST00000607092 KCND1Q9NSA2 647 aa6.17□□□□□ -1.42
CUX1-220ENST00000607092 ETNK2Q9NVF9 386 aa6.17□□□□□ -1.42
CUX1-220ENST00000607092 GPR83Q9NYM4 423 aa6.17□□□□□ -1.42
CUX1-220ENST00000607092 OGFRQ9NZT2 677 aa6.17□□□□□ -1.42
CUX1-220ENST00000607092 HACD3Q9P035 362 aa6.17□□□□□ -1.42
CUX1-220ENST00000607092 ACSL5Q9ULC5 683 aa6.17□□□□□ -1.42
CUX1-220ENST00000607092 PRKAB1Q9Y478 270 aa6.17□□□□□ -1.42
CUX1-220ENST00000607092 HEBP2Q9Y5Z4 205 aa6.17□□□□□ -1.42
CUX1-220ENST00000607092 MRPS18BQ9Y676 258 aaKnown RBP6.17□□□□□ -1.42
CUX1-220ENST00000607092 COLEC10Q9Y6Z7 277 aa6.17□□□□□ -1.42
CUX1-220ENST00000607092 OTOGQ6ZRI0 2925 aa6.17□□□□□ -1.42
CUX1-220ENST00000607092 ARGFXA6NJG6 315 aa6.16□□□□□ -1.42
CUX1-220ENST00000607092 LRRC53A6NM62 1247 aa6.16□□□□□ -1.42
CUX1-220ENST00000607092 SMTNL1A8MU46 457 aa6.16□□□□□ -1.42
CUX1-220ENST00000607092 FADS2P1A8MWK0 482 aa6.16□□□□□ -1.42
CUX1-220ENST00000607092 ZNF487B1APH4 448 aa6.16□□□□□ -1.42
CUX1-220ENST00000607092 C9J4A7 227 aa6.16□□□□□ -1.42
CUX1-220ENST00000607092 PEX12O00623 359 aa6.16□□□□□ -1.42
CUX1-220ENST00000607092 TMEM63AO94886 807 aa6.16□□□□□ -1.42
CUX1-220ENST00000607092 PRLP01236 227 aa6.16□□□□□ -1.42
CUX1-220ENST00000607092 MSL3P1P0C860 447 aa6.16□□□□□ -1.42
CUX1-220ENST00000607092 NR1D1P20393 614 aa6.16□□□□□ -1.42
CUX1-220ENST00000607092 AGXTP21549 392 aa6.16□□□□□ -1.42
CUX1-220ENST00000607092 IL1R2P27930 398 aa6.16□□□□□ -1.42
CUX1-220ENST00000607092 HADHAP40939 763 aa6.16□□□□□ -1.42
CUX1-220ENST00000607092 CD86P42081 329 aa6.16□□□□□ -1.42
CUX1-220ENST00000607092 UQCRFS1P47985 274 aa6.16□□□□□ -1.42
CUX1-220ENST00000607092 VAV2P52735 878 aa6.16□□□□□ -1.42
CUX1-220ENST00000607092 SH3BP2P78314 561 aa6.16□□□□□ -1.42
CUX1-220ENST00000607092 IFI35P80217 286 aaPredicted RBP6.16□□□□□ -1.42
CUX1-220ENST00000607092 DSC2Q02487 901 aa6.16□□□□□ -1.42
CUX1-220ENST00000607092 CDK18Q07002 472 aa6.16□□□□□ -1.42
CUX1-220ENST00000607092 DMPKQ09013 629 aa6.16□□□□□ -1.42
CUX1-220ENST00000607092 XRCC4Q13426 336 aa6.16□□□□□ -1.42
CUX1-220ENST00000607092 ITGA9Q13797 1035 aa6.16□□□□□ -1.42
CUX1-220ENST00000607092 PDK1Q15118 436 aa6.16□□□□□ -1.42
CUX1-220ENST00000607092 ODF2Q5BJF6 829 aa6.16□□□□□ -1.42
CUX1-220ENST00000607092 FIGNQ5HY92 759 aa6.16□□□□□ -1.42
CUX1-220ENST00000607092 VWA5B1Q5TIE3 1220 aa6.16□□□□□ -1.42
CUX1-220ENST00000607092 PWWP2BQ6NUJ5 590 aa6.16□□□□□ -1.42
CUX1-220ENST00000607092 JMJD6Q6NYC1 403 aaPredicted RBP6.16□□□□□ -1.42
CUX1-220ENST00000607092 ZNF449Q6P9G9 518 aa6.16□□□□□ -1.42
CUX1-220ENST00000607092 CRTC3Q6UUV7 619 aa6.16□□□□□ -1.42
CUX1-220ENST00000607092 FAM92BQ6ZTR7 304 aa6.16□□□□□ -1.42
CUX1-220ENST00000607092 TMC3Q7Z5M5 1100 aa6.16□□□□□ -1.42
CUX1-220ENST00000607092 ADGRG6Q86SQ4 1221 aa6.16□□□□□ -1.42
CUX1-220ENST00000607092 TICAM1Q8IUC6 712 aa6.16□□□□□ -1.42
CUX1-220ENST00000607092 TRAPPC5Q8IUR0 188 aa6.16□□□□□ -1.42
CUX1-220ENST00000607092 D2HGDHQ8N465 521 aa6.16□□□□□ -1.42
CUX1-220ENST00000607092 CLEC1AQ8NC01 280 aa6.16□□□□□ -1.42
CUX1-220ENST00000607092 ARRDC2Q8TBH0 407 aa6.16□□□□□ -1.42
CUX1-220ENST00000607092 TRAF3IP1Q8TDR0 691 aaPredicted RBP6.16□□□□□ -1.42
CUX1-220ENST00000607092 RSC1A1Q92681 617 aa6.16□□□□□ -1.42
CUX1-220ENST00000607092 SYN2Q92777 582 aaPredicted RBP6.16□□□□□ -1.42
CUX1-220ENST00000607092 NACC2Q96BF6 587 aa6.16□□□□□ -1.42
CUX1-220ENST00000607092 ELMO2Q96JJ3 720 aa6.16□□□□□ -1.42
CUX1-220ENST00000607092 FER1L6-AS2Q96M78 137 aa6.16□□□□□ -1.42
CUX1-220ENST00000607092 AGAP3Q96P47 875 aa6.16□□□□□ -1.42
CUX1-220ENST00000607092 NLNQ9BYT8 704 aa6.16□□□□□ -1.42
CUX1-220ENST00000607092 SLC7A5P2Q9GIP4 190 aa6.16□□□□□ -1.42
CUX1-220ENST00000607092 CASS4Q9NQ75 786 aa6.16□□□□□ -1.42
CUX1-220ENST00000607092 HRASLS2Q9NWW9 162 aa6.16□□□□□ -1.42
CUX1-220ENST00000607092 SOHLH2Q9NX45 425 aa6.16□□□□□ -1.42
CUX1-220ENST00000607092 TAS2R14Q9NYV8 317 aa6.16□□□□□ -1.42
CUX1-220ENST00000607092 MAP10Q9P2G4 905 aa6.16□□□□□ -1.42
CUX1-220ENST00000607092 ZNF624Q9P2J8 865 aaPredicted RBP6.16□□□□□ -1.42
CUX1-220ENST00000607092 MYO1AQ9UBC5 1043 aa6.16□□□□□ -1.42
CUX1-220ENST00000607092 SERTAD3Q9UJW9 196 aa6.16□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms