RNA–Protein interactions for RNA: ENST00000599342.5

VRK3-216, Transcript of vaccinia related kinase 3, humanhuman

TSL 3

Gene VRK3, Length 795 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-216ENST00000599342 WDR37Q9Y2I8 494 aa9.62□□□□□ -0.87
VRK3-216ENST00000599342 AHCTF1Q8WYP5 2266 aa9.61□□□□□ -0.87
VRK3-216ENST00000599342 PRR19A6NJB7 356 aa9.61□□□□□ -0.87
VRK3-216ENST00000599342 OR2AG2A6NM03 316 aa9.61□□□□□ -0.87
VRK3-216ENST00000599342 C2orf81A6NN90 581 aa9.61□□□□□ -0.87
VRK3-216ENST00000599342 UGT1A9O60656 530 aa9.61□□□□□ -0.87
VRK3-216ENST00000599342 POP7O75817 140 aaKnown RBP9.61□□□□□ -0.87
VRK3-216ENST00000599342 NDUFA10O95299 355 aa9.61□□□□□ -0.87
VRK3-216ENST00000599342 WISP1O95388 367 aa9.61□□□□□ -0.87
VRK3-216ENST00000599342 PRAMEF1O95521 474 aa9.61□□□□□ -0.87
VRK3-216ENST00000599342 DLGAP3O95886 979 aa9.61□□□□□ -0.87
VRK3-216ENST00000599342 UGT1A6P19224 532 aa9.61□□□□□ -0.87
VRK3-216ENST00000599342 TCN2P20062 427 aa9.61□□□□□ -0.87
VRK3-216ENST00000599342 UGT1A1P22309 533 aa9.61□□□□□ -0.87
VRK3-216ENST00000599342 UGT1A4P22310 534 aa9.61□□□□□ -0.87
VRK3-216ENST00000599342 RBL1P28749 1068 aa9.61□□□□□ -0.87
VRK3-216ENST00000599342 CTNNA1P35221 906 aaKnown RBP9.61□□□□□ -0.87
VRK3-216ENST00000599342 CETN2P41208 172 aa9.61□□□□□ -0.87
VRK3-216ENST00000599342 STAT5AP42229 794 aa9.61□□□□□ -0.87
VRK3-216ENST00000599342 LEPRP48357 1165 aaKnown RBP9.61□□□□□ -0.87
VRK3-216ENST00000599342 NFKB2Q00653 900 aa9.61□□□□□ -0.87
VRK3-216ENST00000599342 KCNAB2Q13303 367 aa9.61□□□□□ -0.87
VRK3-216ENST00000599342 PRPSAP1Q14558 356 aa9.61□□□□□ -0.87
VRK3-216ENST00000599342 IL11RAQ14626 422 aa9.61□□□□□ -0.87
VRK3-216ENST00000599342 GPRC6AQ5T6X5 926 aa9.61□□□□□ -0.87
VRK3-216ENST00000599342 TMEM220Q6QAJ8 160 aa9.61□□□□□ -0.87
VRK3-216ENST00000599342 C6orf15Q6UXA7 325 aaPredicted RBP9.61□□□□□ -0.87
VRK3-216ENST00000599342 FAM92BQ6ZTR7 304 aa9.61□□□□□ -0.87
VRK3-216ENST00000599342 TIPARPQ7Z3E1 657 aaKnown RBP9.61□□□□□ -0.87
VRK3-216ENST00000599342 C11orf96Q7Z7L8 435 aa9.61□□□□□ -0.87
VRK3-216ENST00000599342 CDKL3Q8IVW4 592 aaPredicted RBP9.61□□□□□ -0.87
VRK3-216ENST00000599342 RASGEF1AQ8N9B8 481 aa9.61□□□□□ -0.87
VRK3-216ENST00000599342 KRT35Q92764 455 aa9.61□□□□□ -0.87
VRK3-216ENST00000599342 LRRC45Q96CN5 670 aa9.61□□□□□ -0.87
VRK3-216ENST00000599342 ZNF514Q96K75 400 aaPredicted RBP9.61□□□□□ -0.87
VRK3-216ENST00000599342 CALR3Q96L12 384 aaKnown RBP9.61□□□□□ -0.87
VRK3-216ENST00000599342 SPRY4Q9C004 299 aa9.61□□□□□ -0.87
VRK3-216ENST00000599342 TRIM4Q9C037 500 aa9.61□□□□□ -0.87
VRK3-216ENST00000599342 UGT1A7Q9HAW7 530 aa9.61□□□□□ -0.87
VRK3-216ENST00000599342 UGT1A10Q9HAW8 530 aa9.61□□□□□ -0.87
VRK3-216ENST00000599342 UGT1A8Q9HAW9 530 aa9.61□□□□□ -0.87
VRK3-216ENST00000599342 SMOXQ9NWM0 555 aa9.61□□□□□ -0.87
VRK3-216ENST00000599342 TUBD1Q9UJT1 453 aa9.61□□□□□ -0.87
VRK3-216ENST00000599342 PSMD13Q9UNM6 376 aa9.61□□□□□ -0.87
VRK3-216ENST00000599342 AAR2Q9Y312 384 aaKnown RBP9.61□□□□□ -0.87
VRK3-216ENST00000599342 PCDHB3Q9Y5E6 796 aa9.61□□□□□ -0.87
VRK3-216ENST00000599342 ARL5AQ9Y689 179 aa9.61□□□□□ -0.87
VRK3-216ENST00000599342 DNMT3AQ9Y6K1 912 aaPredicted RBP9.61□□□□□ -0.87
VRK3-216ENST00000599342 RPS6KL1Q9Y6S9 549 aa9.61□□□□□ -0.87
VRK3-216ENST00000599342 KALRNO60229 2985 aa9.6□□□□□ -0.87
VRK3-216ENST00000599342 COL6A6A6NMZ7 2263 aa9.6□□□□□ -0.87
VRK3-216ENST00000599342 KLHL33A6NCF5 533 aa9.6□□□□□ -0.87
VRK3-216ENST00000599342 NKX2-8O15522 239 aa9.6□□□□□ -0.87
VRK3-216ENST00000599342 KCNN4O15554 427 aa9.6□□□□□ -0.87
VRK3-216ENST00000599342 PJA2O43164 708 aa9.6□□□□□ -0.87
VRK3-216ENST00000599342 SUV39H1O43463 412 aa9.6□□□□□ -0.87
VRK3-216ENST00000599342 KIAA0754O94854 1291 aa9.6□□□□□ -0.87
VRK3-216ENST00000599342 AGTP01019 485 aa9.6□□□□□ -0.87
VRK3-216ENST00000599342 PTMAP06454 111 aaKnown RBP9.6□□□□□ -0.87
VRK3-216ENST00000599342 LPOP22079 712 aaPredicted RBP9.6□□□□□ -0.87
VRK3-216ENST00000599342 FECHP22830 423 aa9.6□□□□□ -0.87
VRK3-216ENST00000599342 DLSTP36957 453 aa9.6□□□□□ -0.87
VRK3-216ENST00000599342 ARL4DP49703 201 aa9.6□□□□□ -0.87
VRK3-216ENST00000599342 CSRP3P50461 194 aa9.6□□□□□ -0.87
VRK3-216ENST00000599342 CTSCP53634 463 aa9.6□□□□□ -0.87
VRK3-216ENST00000599342 EIF3EP60228 445 aaKnown RBP9.6□□□□□ -0.87
VRK3-216ENST00000599342 SH3BP2P78314 561 aa9.6□□□□□ -0.87
VRK3-216ENST00000599342 PDE1BQ01064 536 aa9.6□□□□□ -0.87
VRK3-216ENST00000599342 OTUD4Q01804 1114 aaKnown RBP9.6□□□□□ -0.87
VRK3-216ENST00000599342 SEPT6Q14141 434 aa9.6□□□□□ -0.87
VRK3-216ENST00000599342 NFE2L1Q14494 772 aa9.6□□□□□ -0.87
VRK3-216ENST00000599342 TAF1AQ15573 450 aaPredicted RBP9.6□□□□□ -0.87
VRK3-216ENST00000599342 RPE65Q16518 533 aa9.6□□□□□ -0.87
VRK3-216ENST00000599342 FNBP1LQ5T0N5 605 aa9.6□□□□□ -0.87
VRK3-216ENST00000599342 C16orf46Q6P387 395 aa9.6□□□□□ -0.87
VRK3-216ENST00000599342 DET1Q7L5Y6 550 aa9.6□□□□□ -0.87
VRK3-216ENST00000599342 PPP1R3BQ86XI6 285 aa9.6□□□□□ -0.87
VRK3-216ENST00000599342 BEND7Q8N7W2 519 aaPredicted RBP9.6□□□□□ -0.87
VRK3-216ENST00000599342 SIDT2Q8NBJ9 832 aaKnown RBP9.6□□□□□ -0.87
VRK3-216ENST00000599342 GALNT6Q8NCL4 622 aa9.6□□□□□ -0.87
VRK3-216ENST00000599342 OR4K2Q8NGD2 314 aa9.6□□□□□ -0.87
VRK3-216ENST00000599342 GPR150Q8NGU9 434 aa9.6□□□□□ -0.87
VRK3-216ENST00000599342 ACTL9Q8TC94 416 aa9.6□□□□□ -0.87
VRK3-216ENST00000599342 ZNF398Q8TD17 642 aa9.6□□□□□ -0.87
VRK3-216ENST00000599342 UBXN4Q92575 508 aa9.6□□□□□ -0.87
VRK3-216ENST00000599342 ELMO2Q96JJ3 720 aa9.6□□□□□ -0.87
VRK3-216ENST00000599342 PPP1R2P1Q96PQ5 205 aa9.6□□□□□ -0.87
VRK3-216ENST00000599342 OSBPL8Q9BZF1 889 aa9.6□□□□□ -0.87
VRK3-216ENST00000599342 RAB33BQ9H082 229 aa9.6□□□□□ -0.87
VRK3-216ENST00000599342 ASB8Q9H765 288 aa9.6□□□□□ -0.87
VRK3-216ENST00000599342 C10orf88Q9H8K7 445 aa9.6□□□□□ -0.87
VRK3-216ENST00000599342 PDE7BQ9NP56 450 aa9.6□□□□□ -0.87
VRK3-216ENST00000599342 IMP3Q9NV31 184 aaKnown RBP9.6□□□□□ -0.87
VRK3-216ENST00000599342 EPHA6Q9UF33 1036 aa9.6□□□□□ -0.87
VRK3-216ENST00000599342 LNPEPQ9UIQ6 1025 aa9.6□□□□□ -0.87
VRK3-216ENST00000599342 CRLS1Q9UJA2 301 aa9.6□□□□□ -0.87
VRK3-216ENST00000599342 EFR3BQ9Y2G0 817 aa9.6□□□□□ -0.87
VRK3-216ENST00000599342 UBA6A0AVT1 1052 aaPredicted RBP9.59□□□□□ -0.87
VRK3-216ENST00000599342 CCDC66A2RUB6 948 aa9.59□□□□□ -0.87
VRK3-216ENST00000599342 C5orf60A6NFR6 353 aa9.59□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms