RNA–Protein interactions for RNA: ENST00000599322.5

LIG1-218, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 620 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-218ENST00000599322 UCK1Q9HA47 277 aa13.9□□□□□ -0.18
LIG1-218ENST00000599322 ETNK1Q9HBU6 452 aa13.9□□□□□ -0.18
LIG1-218ENST00000599322 ASCL3Q9NQ33 180 aa13.9□□□□□ -0.18
LIG1-218ENST00000599322 NLE1Q9NVX2 485 aaPredicted RBP13.9□□□□□ -0.18
LIG1-218ENST00000599322 SLC23A2Q9UGH3 650 aa13.9□□□□□ -0.18
LIG1-218ENST00000599322 PCYT1BQ9Y5K3 369 aaPredicted RBP13.9□□□□□ -0.18
LIG1-218ENST00000599322 GCN1Q92616 2671 aaKnown RBP13.9□□□□□ -0.18
LIG1-218ENST00000599322 ARHGEF17Q96PE2 2063 aaPredicted RBP13.89□□□□□ -0.19
LIG1-218ENST00000599322 IGHV5-10-1A0A0J9YXX1 117 aa13.89□□□□□ -0.19
LIG1-218ENST00000599322 A6NCN8 305 aa13.89□□□□□ -0.19
LIG1-218ENST00000599322 MGAT4DA6NG13 374 aa13.89□□□□□ -0.19
LIG1-218ENST00000599322 EIF4E1BA6NMX2 242 aaKnown RBP13.89□□□□□ -0.19
LIG1-218ENST00000599322 CDRT15L2A8MXV6 281 aa13.89□□□□□ -0.19
LIG1-218ENST00000599322 AGRPO00253 132 aa13.89□□□□□ -0.19
LIG1-218ENST00000599322 QSOX1O00391 747 aa13.89□□□□□ -0.19
LIG1-218ENST00000599322 NVLO15381 856 aaKnown RBP13.89□□□□□ -0.19
LIG1-218ENST00000599322 LDB2O43679 373 aa13.89□□□□□ -0.19
LIG1-218ENST00000599322 KIF5CO60282 957 aa13.89□□□□□ -0.19
LIG1-218ENST00000599322 APRTP07741 180 aa13.89□□□□□ -0.19
LIG1-218ENST00000599322 SLC35G4P0C7Q5 338 aa13.89□□□□□ -0.19
LIG1-218ENST00000599322 CD82P27701 267 aa13.89□□□□□ -0.19
LIG1-218ENST00000599322 ZNF140P52738 457 aaPredicted RBP13.89□□□□□ -0.19
LIG1-218ENST00000599322 TMPRSS3P57727 454 aa13.89□□□□□ -0.19
LIG1-218ENST00000599322 SARNPP82979 210 aaKnown RBP13.89□□□□□ -0.19
LIG1-218ENST00000599322 CACNG1Q06432 222 aa13.89□□□□□ -0.19
LIG1-218ENST00000599322 DMPKQ09013 629 aa13.89□□□□□ -0.19
LIG1-218ENST00000599322 KHDC1Q4VXA5 237 aaKnown RBP13.89□□□□□ -0.19
LIG1-218ENST00000599322 LYPLAL1Q5VWZ2 237 aa13.89□□□□□ -0.19
LIG1-218ENST00000599322 DENND5AQ6IQ26 1287 aa13.89□□□□□ -0.19
LIG1-218ENST00000599322 DRICH1Q6PGQ1 229 aaPredicted RBP13.89□□□□□ -0.19
LIG1-218ENST00000599322 TMEM26Q6ZUK4 368 aa13.89□□□□□ -0.19
LIG1-218ENST00000599322 CLEC14AQ86T13 490 aa13.89□□□□□ -0.19
LIG1-218ENST00000599322 ZNF547Q8IVP9 402 aa13.89□□□□□ -0.19
LIG1-218ENST00000599322 SPACA3Q8IXA5 215 aa13.89□□□□□ -0.19
LIG1-218ENST00000599322 NXPE1Q8N323 547 aa13.89□□□□□ -0.19
LIG1-218ENST00000599322 OR52K1Q8NGK4 314 aa13.89□□□□□ -0.19
LIG1-218ENST00000599322 SGF29Q96ES7 293 aa13.89□□□□□ -0.19
LIG1-218ENST00000599322 PRR11Q96HE9 360 aaPredicted RBP13.89□□□□□ -0.19
LIG1-218ENST00000599322 TAAR9Q96RI9 348 aa13.89□□□□□ -0.19
LIG1-218ENST00000599322 CCM2Q9BSQ5 444 aa13.89□□□□□ -0.19
LIG1-218ENST00000599322 ASPSCR1Q9BZE9 553 aa13.89□□□□□ -0.19
LIG1-218ENST00000599322 B3GNT4Q9C0J1 378 aa13.89□□□□□ -0.19
LIG1-218ENST00000599322 ZDHHC3Q9NYG2 299 aa13.89□□□□□ -0.19
LIG1-218ENST00000599322 ANAPC5Q9UJX4 755 aa13.89□□□□□ -0.19
LIG1-218ENST00000599322 TMPRSS11EQ9UL52 423 aa13.89□□□□□ -0.19
LIG1-218ENST00000599322 KCTD3Q9Y597 815 aa13.89□□□□□ -0.19
LIG1-218ENST00000599322 UNC13CQ8NB66 2214 aa13.88□□□□□ -0.19
LIG1-218ENST00000599322 H7C0S8 307 aa13.88□□□□□ -0.19
LIG1-218ENST00000599322 UBXN7O94888 489 aa13.88□□□□□ -0.19
LIG1-218ENST00000599322 GSTM1P09488 218 aa13.88□□□□□ -0.19
LIG1-218ENST00000599322 HGFP14210 728 aa13.88□□□□□ -0.19
LIG1-218ENST00000599322 ATP1B2P14415 290 aaPredicted RBP13.88□□□□□ -0.19
LIG1-218ENST00000599322 ADRA1DP25100 572 aa13.88□□□□□ -0.19
LIG1-218ENST00000599322 MPSTP25325 297 aa13.88□□□□□ -0.19
LIG1-218ENST00000599322 SLC5A2P31639 672 aa13.88□□□□□ -0.19
LIG1-218ENST00000599322 SLC19A1P41440 591 aa13.88□□□□□ -0.19
LIG1-218ENST00000599322 DRG2P55039 364 aaKnown RBP13.88□□□□□ -0.19
LIG1-218ENST00000599322 RAB15P59190 212 aa13.88□□□□□ -0.19
LIG1-218ENST00000599322 UBE2IP63279 158 aaKnown RBP13.88□□□□□ -0.19
LIG1-218ENST00000599322 BASP1P80723 227 aaKnown RBP13.88□□□□□ -0.19
LIG1-218ENST00000599322 GSTM4Q03013 218 aa13.88□□□□□ -0.19
LIG1-218ENST00000599322 SEMA5AQ13591 1074 aa13.88□□□□□ -0.19
LIG1-218ENST00000599322 PLCL1Q15111 1095 aa13.88□□□□□ -0.19
LIG1-218ENST00000599322 ARMC6Q6NXE6 501 aa13.88□□□□□ -0.19
LIG1-218ENST00000599322 CYB5D1Q6P9G0 228 aa13.88□□□□□ -0.19
LIG1-218ENST00000599322 FAM129CQ86XR2 697 aa13.88□□□□□ -0.19
LIG1-218ENST00000599322 PPHLN1Q8NEY8 458 aaKnown RBP13.88□□□□□ -0.19
LIG1-218ENST00000599322 OR2L2Q8NH16 312 aa13.88□□□□□ -0.19
LIG1-218ENST00000599322 USP7Q93009 1102 aa13.88□□□□□ -0.19
LIG1-218ENST00000599322 ZDHHC12Q96GR4 267 aa13.88□□□□□ -0.19
LIG1-218ENST00000599322 CDKN2AIPNLQ96HQ2 116 aa13.88□□□□□ -0.19
LIG1-218ENST00000599322 DNAJC1Q96KC8 554 aaKnown RBP13.88□□□□□ -0.19
LIG1-218ENST00000599322 TLR10Q9BXR5 811 aa13.88□□□□□ -0.19
LIG1-218ENST00000599322 FAM96AQ9H5X1 160 aa13.88□□□□□ -0.19
LIG1-218ENST00000599322 HEBP2Q9Y5Z4 205 aa13.88□□□□□ -0.19
LIG1-218ENST00000599322 COLEC10Q9Y6Z7 277 aa13.88□□□□□ -0.19
LIG1-218ENST00000599322 A8MU76 341 aa13.87□□□□□ -0.19
LIG1-218ENST00000599322 IFRD1O00458 451 aaPredicted RBP13.87□□□□□ -0.19
LIG1-218ENST00000599322 CASC3O15234 703 aaKnown RBP13.87□□□□□ -0.19
LIG1-218ENST00000599322 SUN1O94901 812 aa13.87□□□□□ -0.19
LIG1-218ENST00000599322 THRAP10827 490 aa13.87□□□□□ -0.19
LIG1-218ENST00000599322 NDUFS1P28331 727 aa13.87□□□□□ -0.19
LIG1-218ENST00000599322 CXCR5P32302 372 aa13.87□□□□□ -0.19
LIG1-218ENST00000599322 CTSCP53634 463 aa13.87□□□□□ -0.19
LIG1-218ENST00000599322 PRAMEP78395 509 aa13.87□□□□□ -0.19
LIG1-218ENST00000599322 XIAPP98170 497 aa13.87□□□□□ -0.19
LIG1-218ENST00000599322 TLE3Q04726 772 aa13.87□□□□□ -0.19
LIG1-218ENST00000599322 C16orf72Q14CZ0 275 aa13.87□□□□□ -0.19
LIG1-218ENST00000599322 BCL7AQ4VC05 210 aa13.87□□□□□ -0.19
LIG1-218ENST00000599322 DCAF12Q5T6F0 453 aa13.87□□□□□ -0.19
LIG1-218ENST00000599322 METRNLQ641Q3 311 aa13.87□□□□□ -0.19
LIG1-218ENST00000599322 GPR155Q7Z3F1 870 aa13.87□□□□□ -0.19
LIG1-218ENST00000599322 SERPINA9Q86WD7 417 aa13.87□□□□□ -0.19
LIG1-218ENST00000599322 CFAP206Q8IYR0 622 aa13.87□□□□□ -0.19
LIG1-218ENST00000599322 RCBTB1Q8NDN9 531 aa13.87□□□□□ -0.19
LIG1-218ENST00000599322 ZFPM2Q8WW38 1151 aa13.87□□□□□ -0.19
LIG1-218ENST00000599322 TSSK1BQ9BXA7 367 aa13.87□□□□□ -0.19
LIG1-218ENST00000599322 TBC1D10AQ9BXI6 508 aa13.87□□□□□ -0.19
LIG1-218ENST00000599322 PRORYQ9H606 182 aa13.87□□□□□ -0.19
LIG1-218ENST00000599322 IMP3Q9NV31 184 aaKnown RBP13.87□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms