RNA–Protein interactions for RNA: ENST00000582653.1

SHMT1-209, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 3

Gene SHMT1, Length 879 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-209ENST00000582653 PJA2O43164 708 aa20.1■□□□□ 0.81
SHMT1-209ENST00000582653 KCNJ13O60928 360 aa20.1■□□□□ 0.81
SHMT1-209ENST00000582653 PPFIA2O75334 1257 aa20.1■□□□□ 0.81
SHMT1-209ENST00000582653 IPO7O95373 1038 aaKnown RBP20.1■□□□□ 0.81
SHMT1-209ENST00000582653 RBP3P10745 1247 aa20.1■□□□□ 0.81
SHMT1-209ENST00000582653 PYGMP11217 842 aa20.1■□□□□ 0.81
SHMT1-209ENST00000582653 AMD1P17707 334 aa20.1■□□□□ 0.81
SHMT1-209ENST00000582653 CTSCP53634 463 aa20.1■□□□□ 0.81
SHMT1-209ENST00000582653 RWDD2BP57060 319 aa20.1■□□□□ 0.81
SHMT1-209ENST00000582653 ABHD18Q0P651 414 aa20.1■□□□□ 0.81
SHMT1-209ENST00000582653 ANKRD20A2Q5SQ80 823 aa20.1■□□□□ 0.81
SHMT1-209ENST00000582653 ANKRD20A1Q5TYW2 823 aa20.1■□□□□ 0.81
SHMT1-209ENST00000582653 AGAP9Q5VTM2 703 aa20.1■□□□□ 0.81
SHMT1-209ENST00000582653 ANKRD20A3Q5VUR7 823 aa20.1■□□□□ 0.81
SHMT1-209ENST00000582653 ZDHHC20Q5W0Z9 365 aa20.1■□□□□ 0.81
SHMT1-209ENST00000582653 EFR3BQ9Y2G0 817 aa20.1■□□□□ 0.81
SHMT1-209ENST00000582653 KCTD3Q9Y597 815 aa20.1■□□□□ 0.81
SHMT1-209ENST00000582653 CCDC66A2RUB6 948 aa20.09■□□□□ 0.81
SHMT1-209ENST00000582653 GRID2IPA4D2P6 1211 aa20.09■□□□□ 0.81
SHMT1-209ENST00000582653 BTNL10A8MVZ5 291 aa20.09■□□□□ 0.81
SHMT1-209ENST00000582653 PYCARD-AS1I3L0S3 204 aa20.09■□□□□ 0.81
SHMT1-209ENST00000582653 STX7O15400 261 aaKnown RBP20.09■□□□□ 0.81
SHMT1-209ENST00000582653 KCNN4O15554 427 aa20.09■□□□□ 0.81
SHMT1-209ENST00000582653 POP7O75817 140 aaKnown RBP20.09■□□□□ 0.81
SHMT1-209ENST00000582653 ANXA9O76027 345 aa20.09■□□□□ 0.81
SHMT1-209ENST00000582653 STK17BO94768 372 aa20.09■□□□□ 0.81
SHMT1-209ENST00000582653 PSMB4P28070 264 aa20.09■□□□□ 0.81
SHMT1-209ENST00000582653 LDLRAP1Q5SW96 308 aa20.09■□□□□ 0.81
SHMT1-209ENST00000582653 GPRC6AQ5T6X5 926 aa20.09■□□□□ 0.81
SHMT1-209ENST00000582653 ITPRIPL1Q6GPH6 555 aa20.09■□□□□ 0.81
SHMT1-209ENST00000582653 DARS2Q6PI48 645 aaKnown RBP20.09■□□□□ 0.81
SHMT1-209ENST00000582653 TMEM220Q6QAJ8 160 aa20.09■□□□□ 0.81
SHMT1-209ENST00000582653 RANBP10Q6VN20 620 aa20.09■□□□□ 0.81
SHMT1-209ENST00000582653 ATG14Q6ZNE5 492 aa20.09■□□□□ 0.81
SHMT1-209ENST00000582653 CDKL3Q8IVW4 592 aaPredicted RBP20.09■□□□□ 0.81
SHMT1-209ENST00000582653 RBM12BQ8IXT5 1001 aaKnown RBP20.09■□□□□ 0.81
SHMT1-209ENST00000582653 LRRC57Q8N9N7 239 aa20.09■□□□□ 0.81
SHMT1-209ENST00000582653 DDHD1Q8NEL9 900 aa20.09■□□□□ 0.81
SHMT1-209ENST00000582653 CCDC110Q8TBZ0 833 aa20.09■□□□□ 0.81
SHMT1-209ENST00000582653 NAT14Q8WUY8 206 aa20.09■□□□□ 0.81
SHMT1-209ENST00000582653 KIAA1143Q96AT1 154 aaPredicted RBP20.09■□□□□ 0.81
SHMT1-209ENST00000582653 TGM7Q96PF1 710 aa20.09■□□□□ 0.81
SHMT1-209ENST00000582653 GPN2Q9H9Y4 310 aaPredicted RBP20.09■□□□□ 0.81
SHMT1-209ENST00000582653 SLC40A1Q9NP59 571 aa20.09■□□□□ 0.81
SHMT1-209ENST00000582653 POT1Q9NUX5 634 aa20.09■□□□□ 0.81
SHMT1-209ENST00000582653 SIDT1Q9NXL6 827 aaKnown RBP20.09■□□□□ 0.81
SHMT1-209ENST00000582653 IL17BQ9UHF5 180 aa20.09■□□□□ 0.81
SHMT1-209ENST00000582653 ASH1LQ9NR48 2969 aaKnown RBP20.09■□□□□ 0.81
SHMT1-209ENST00000582653 SETXQ7Z333 2677 aaKnown RBP20.09■□□□□ 0.81
SHMT1-209ENST00000582653 A0A0U1RQJ8 604 aa20.08■□□□□ 0.81
SHMT1-209ENST00000582653 OR2AG2A6NM03 316 aa20.08■□□□□ 0.81
SHMT1-209ENST00000582653 NKX2-8O15522 239 aa20.08■□□□□ 0.81
SHMT1-209ENST00000582653 VCLP18206 1134 aa20.08■□□□□ 0.81
SHMT1-209ENST00000582653 PTPN7P35236 360 aa20.08■□□□□ 0.81
SHMT1-209ENST00000582653 ADRA1AP35348 466 aa20.08■□□□□ 0.81
SHMT1-209ENST00000582653 CCR10P46092 362 aa20.08■□□□□ 0.81
SHMT1-209ENST00000582653 CSRP3P50461 194 aa20.08■□□□□ 0.81
SHMT1-209ENST00000582653 VAV2P52735 878 aa20.08■□□□□ 0.81
SHMT1-209ENST00000582653 NFKB2Q00653 900 aa20.08■□□□□ 0.81
SHMT1-209ENST00000582653 MAP7Q14244 749 aa20.08■□□□□ 0.81
SHMT1-209ENST00000582653 GPR18Q14330 331 aa20.08■□□□□ 0.81
SHMT1-209ENST00000582653 FAM83HQ6ZRV2 1179 aaPredicted RBP20.08■□□□□ 0.81
SHMT1-209ENST00000582653 AMZ2Q86W34 360 aa20.08■□□□□ 0.81
SHMT1-209ENST00000582653 OR4K2Q8NGD2 314 aa20.08■□□□□ 0.81
SHMT1-209ENST00000582653 ZNF398Q8TD17 642 aa20.08■□□□□ 0.81
SHMT1-209ENST00000582653 CXorf40BQ96DE9 158 aa20.08■□□□□ 0.81
SHMT1-209ENST00000582653 RNF31Q96EP0 1072 aa20.08■□□□□ 0.81
SHMT1-209ENST00000582653 CALR3Q96L12 384 aaKnown RBP20.08■□□□□ 0.81
SHMT1-209ENST00000582653 TUBD1Q9UJT1 453 aa20.08■□□□□ 0.81
SHMT1-209ENST00000582653 PSMD13Q9UNM6 376 aa20.08■□□□□ 0.81
SHMT1-209ENST00000582653 TERTO14746 1132 aaKnown RBP20.07■□□□□ 0.8
SHMT1-209ENST00000582653 DLGAP3O95886 979 aa20.07■□□□□ 0.8
SHMT1-209ENST00000582653 LPOP22079 712 aaPredicted RBP20.07■□□□□ 0.8
SHMT1-209ENST00000582653 PBLDP30039 288 aaPredicted RBP20.07■□□□□ 0.8
SHMT1-209ENST00000582653 LEPRP48357 1165 aaKnown RBP20.07■□□□□ 0.8
SHMT1-209ENST00000582653 ITGA9Q13797 1035 aa20.07■□□□□ 0.8
SHMT1-209ENST00000582653 SPARCL1Q14515 664 aa20.07■□□□□ 0.8
SHMT1-209ENST00000582653 IL11RAQ14626 422 aa20.07■□□□□ 0.8
SHMT1-209ENST00000582653 DET1Q7L5Y6 550 aa20.07■□□□□ 0.8
SHMT1-209ENST00000582653 KIAA1328Q86T90 577 aa20.07■□□□□ 0.8
SHMT1-209ENST00000582653 BEND7Q8N7W2 519 aaPredicted RBP20.07■□□□□ 0.8
SHMT1-209ENST00000582653 RSC1A1Q92681 617 aa20.07■□□□□ 0.8
SHMT1-209ENST00000582653 BAG1Q99933 345 aaPredicted RBP20.07■□□□□ 0.8
SHMT1-209ENST00000582653 FERMT1Q9BQL6 677 aa20.07■□□□□ 0.8
SHMT1-209ENST00000582653 RAB33BQ9H082 229 aa20.07■□□□□ 0.8
SHMT1-209ENST00000582653 EPHA6Q9UF33 1036 aa20.07■□□□□ 0.8
SHMT1-209ENST00000582653 FKBPLQ9UIM3 349 aa20.07■□□□□ 0.8
SHMT1-209ENST00000582653 PACSIN2Q9UNF0 486 aaPredicted RBP20.07■□□□□ 0.8
SHMT1-209ENST00000582653 AAR2Q9Y312 384 aaKnown RBP20.07■□□□□ 0.8
SHMT1-209ENST00000582653 DNMT3AQ9Y6K1 912 aaPredicted RBP20.07■□□□□ 0.8
SHMT1-209ENST00000582653 FLNBO75369 2602 aaKnown RBP20.06■□□□□ 0.8
SHMT1-209ENST00000582653 KIF1CO43896 1103 aaKnown RBP20.06■□□□□ 0.8
SHMT1-209ENST00000582653 TJP3O95049 919 aa20.06■□□□□ 0.8
SHMT1-209ENST00000582653 PRAMEF1O95521 474 aa20.06■□□□□ 0.8
SHMT1-209ENST00000582653 SEPHS1P49903 392 aa20.06■□□□□ 0.8
SHMT1-209ENST00000582653 POLE2P56282 527 aa20.06■□□□□ 0.8
SHMT1-209ENST00000582653 FOXM1Q08050 763 aa20.06■□□□□ 0.8
SHMT1-209ENST00000582653 KCNAB2Q13303 367 aa20.06■□□□□ 0.8
SHMT1-209ENST00000582653 MSLNQ13421 630 aaPredicted RBP20.06■□□□□ 0.8
SHMT1-209ENST00000582653 NFE2L1Q14494 772 aa20.06■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms