RNA–Protein interactions for RNA: ENST00000576149.5

VPS53-220, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 2,444 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-220ENST00000576149 TXNDC8Q6A555 127 aa9.95□□□□□ -0.82
VPS53-220ENST00000576149 PTRHD1Q6GMV3 140 aaKnown RBP9.95□□□□□ -0.82
VPS53-220ENST00000576149 RETSATQ6NUM9 610 aa9.95□□□□□ -0.82
VPS53-220ENST00000576149 LETMD1Q6P1Q0 360 aa9.95□□□□□ -0.82
VPS53-220ENST00000576149 FAM151BQ6UXP7 276 aa9.95□□□□□ -0.82
VPS53-220ENST00000576149 FRA10AC1Q70Z53 315 aa9.95□□□□□ -0.82
VPS53-220ENST00000576149 ANKRD33Q7Z3H0 272 aa9.95□□□□□ -0.82
VPS53-220ENST00000576149 SATL1Q86VE3 508 aa9.95□□□□□ -0.82
VPS53-220ENST00000576149 SERPINA9Q86WD7 417 aa9.95□□□□□ -0.82
VPS53-220ENST00000576149 SPPL2CQ8IUH8 684 aa9.95□□□□□ -0.82
VPS53-220ENST00000576149 CHERPQ8IWX8 916 aaKnown RBP9.95□□□□□ -0.82
VPS53-220ENST00000576149 TMEM199Q8N511 208 aa9.95□□□□□ -0.82
VPS53-220ENST00000576149 DCBLD1Q8N8Z6 715 aa9.95□□□□□ -0.82
VPS53-220ENST00000576149 OR6K2Q8NGY2 324 aa9.95□□□□□ -0.82
VPS53-220ENST00000576149 ZFAND2BQ8WV99 257 aa9.95□□□□□ -0.82
VPS53-220ENST00000576149 PPWD1Q96BP3 646 aaKnown RBP9.95□□□□□ -0.82
VPS53-220ENST00000576149 ZNF558Q96NG5 402 aa9.95□□□□□ -0.82
VPS53-220ENST00000576149 CDK15Q96Q40 435 aa9.95□□□□□ -0.82
VPS53-220ENST00000576149 CIB1Q99828 191 aa9.95□□□□□ -0.82
VPS53-220ENST00000576149 OSBPL11Q9BXB4 747 aa9.95□□□□□ -0.82
VPS53-220ENST00000576149 CIPCQ9C0C6 399 aa9.95□□□□□ -0.82
VPS53-220ENST00000576149 CLPBQ9H078 707 aa9.95□□□□□ -0.82
VPS53-220ENST00000576149 ZFYVE1Q9HBF4 777 aa9.95□□□□□ -0.82
VPS53-220ENST00000576149 EGFL7Q9UHF1 273 aa9.95□□□□□ -0.82
VPS53-220ENST00000576149 APPL1Q9UKG1 709 aa9.95□□□□□ -0.82
VPS53-220ENST00000576149 INSL5Q9Y5Q6 135 aa9.95□□□□□ -0.82
VPS53-220ENST00000576149 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP9.94□□□□□ -0.82
VPS53-220ENST00000576149 DHRS12A0PJE2 317 aa9.94□□□□□ -0.82
VPS53-220ENST00000576149 CCDC154A6NI56 674 aa9.94□□□□□ -0.82
VPS53-220ENST00000576149 OR7A17O14581 309 aa9.94□□□□□ -0.82
VPS53-220ENST00000576149 HNRNPRO43390 633 aaKnown RBP9.94□□□□□ -0.82
VPS53-220ENST00000576149 HTRA2O43464 458 aaPredicted RBP9.94□□□□□ -0.82
VPS53-220ENST00000576149 AKAP10O43572 662 aa9.94□□□□□ -0.82
VPS53-220ENST00000576149 BAIAP3O94812 1187 aa9.94□□□□□ -0.82
VPS53-220ENST00000576149 CLPTM1O96005 669 aa9.94□□□□□ -0.82
VPS53-220ENST00000576149 TRBC1P01850 177 aa9.94□□□□□ -0.82
VPS53-220ENST00000576149 PSMC3P17980 439 aa9.94□□□□□ -0.82
VPS53-220ENST00000576149 CA5AP35218 305 aa9.94□□□□□ -0.82
VPS53-220ENST00000576149 CSNK1DP48730 415 aa9.94□□□□□ -0.82
VPS53-220ENST00000576149 POLR2JP52435 117 aaKnown RBP9.94□□□□□ -0.82
VPS53-220ENST00000576149 ATN1P54259 1190 aaPredicted RBP9.94□□□□□ -0.82
VPS53-220ENST00000576149 TXNL4AP83876 142 aaKnown RBP9.94□□□□□ -0.82
VPS53-220ENST00000576149 BCL2L1Q07817 233 aa9.94□□□□□ -0.82
VPS53-220ENST00000576149 INPP5AQ14642 412 aa9.94□□□□□ -0.82
VPS53-220ENST00000576149 CDKN3Q16667 212 aa9.94□□□□□ -0.82
VPS53-220ENST00000576149 ATP6AP1LQ52LC2 224 aa9.94□□□□□ -0.82
VPS53-220ENST00000576149 NAIF1Q69YI7 327 aaPredicted RBP9.94□□□□□ -0.82
VPS53-220ENST00000576149 PPP4R4Q6NUP7 873 aa9.94□□□□□ -0.82
VPS53-220ENST00000576149 SNX20Q7Z614 316 aa9.94□□□□□ -0.82
VPS53-220ENST00000576149 RBFAQ8N0V3 343 aa9.94□□□□□ -0.82
VPS53-220ENST00000576149 FNDC5Q8NAU1 212 aa9.94□□□□□ -0.82
VPS53-220ENST00000576149 PDPRQ8NCN5 879 aa9.94□□□□□ -0.82
VPS53-220ENST00000576149 DNAJB14Q8TBM8 379 aa9.94□□□□□ -0.82
VPS53-220ENST00000576149 FAM110BQ8TC76 370 aa9.94□□□□□ -0.82
VPS53-220ENST00000576149 PROKR1Q8TCW9 393 aa9.94□□□□□ -0.82
VPS53-220ENST00000576149 BHMTQ93088 406 aa9.94□□□□□ -0.82
VPS53-220ENST00000576149 ACDQ96AP0 544 aa9.94□□□□□ -0.82
VPS53-220ENST00000576149 C1orf50Q9BV19 199 aa9.94□□□□□ -0.82
VPS53-220ENST00000576149 MRPS26Q9BYN8 205 aaKnown RBP9.94□□□□□ -0.82
VPS53-220ENST00000576149 MUC13Q9H3R2 512 aa9.94□□□□□ -0.82
VPS53-220ENST00000576149 ASB8Q9H765 288 aa9.94□□□□□ -0.82
VPS53-220ENST00000576149 EVLQ9UI08 416 aaPredicted RBP9.94□□□□□ -0.82
VPS53-220ENST00000576149 LEF1Q9UJU2 399 aaPredicted RBP9.94□□□□□ -0.82
VPS53-220ENST00000576149 TRBV5-4A0A0C4DH59 114 aa9.94□□□□□ -0.82
VPS53-220ENST00000576149 C1orf232A0A0U1RR37 186 aa9.94□□□□□ -0.82
VPS53-220ENST00000576149 FAM234BA2RU67 622 aa9.94□□□□□ -0.82
VPS53-220ENST00000576149 EME2A4GXA9 379 aaPredicted RBP9.94□□□□□ -0.82
VPS53-220ENST00000576149 ARPC2O15144 300 aa9.94□□□□□ -0.82
VPS53-220ENST00000576149 FFAR2O15552 330 aa9.94□□□□□ -0.82
VPS53-220ENST00000576149 SYNCRIPO60506 623 aaKnown RBP9.94□□□□□ -0.82
VPS53-220ENST00000576149 FKTNO75072 461 aa9.94□□□□□ -0.82
VPS53-220ENST00000576149 CAPN1P07384 714 aa9.94□□□□□ -0.82
VPS53-220ENST00000576149 IL12AP29459 219 aa9.94□□□□□ -0.82
VPS53-220ENST00000576149 MAPK8P45983 427 aa9.94□□□□□ -0.82
VPS53-220ENST00000576149 GSK3BP49841 420 aa9.94□□□□□ -0.82
VPS53-220ENST00000576149 ROR2Q01974 943 aaKnown RBP9.94□□□□□ -0.82
VPS53-220ENST00000576149 PRKCQQ04759 706 aa9.94□□□□□ -0.82
VPS53-220ENST00000576149 NFATC2Q13469 925 aa9.94□□□□□ -0.82
VPS53-220ENST00000576149 ARHGEF6Q15052 776 aa9.94□□□□□ -0.82
VPS53-220ENST00000576149 C18orf21Q32NC0 220 aaPredicted RBP9.94□□□□□ -0.82
VPS53-220ENST00000576149 TBCELQ5QJ74 424 aa9.94□□□□□ -0.82
VPS53-220ENST00000576149 IYDQ6PHW0 289 aa9.94□□□□□ -0.82
VPS53-220ENST00000576149 ISLR2Q6UXK2 745 aa9.94□□□□□ -0.82
VPS53-220ENST00000576149 GOLGA7Q7Z5G4 137 aa9.94□□□□□ -0.82
VPS53-220ENST00000576149 PTRH1Q86Y79 214 aaKnown RBP9.94□□□□□ -0.82
VPS53-220ENST00000576149 SFRP1Q8N474 314 aa9.94□□□□□ -0.82
VPS53-220ENST00000576149 METTL6Q8TCB7 284 aa9.94□□□□□ -0.82
VPS53-220ENST00000576149 AUTS2Q8WXX7 1259 aa9.94□□□□□ -0.82
VPS53-220ENST00000576149 DEFB118Q96PH6 123 aa9.94□□□□□ -0.82
VPS53-220ENST00000576149 BOCQ9BWV1 1114 aa9.94□□□□□ -0.82
VPS53-220ENST00000576149 TRIM8Q9BZR9 551 aa9.94□□□□□ -0.82
VPS53-220ENST00000576149 IL26Q9NPH9 171 aa9.94□□□□□ -0.82
VPS53-220ENST00000576149 HEBP1Q9NRV9 189 aa9.94□□□□□ -0.82
VPS53-220ENST00000576149 GNPTGQ9UJJ9 305 aa9.94□□□□□ -0.82
VPS53-220ENST00000576149 PLXNA4Q9HCM2 1894 aa9.94□□□□□ -0.82
VPS53-220ENST00000576149 MICAL3Q7RTP6 2002 aa9.93□□□□□ -0.82
VPS53-220ENST00000576149 RAD51BO15315 384 aa9.93□□□□□ -0.82
VPS53-220ENST00000576149 SOCS5O75159 536 aa9.93□□□□□ -0.82
VPS53-220ENST00000576149 GLUD1P00367 558 aa9.93□□□□□ -0.82
VPS53-220ENST00000576149 NPPAP01160 153 aa9.93□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 44.9 ms