RNA–Protein interactions for RNA: ENST00000572365.1

SF3B3-214, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 4

Gene SF3B3, Length 575 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-214ENST00000572365 CHMP5Q9NZZ3 219 aa5.55□□□□□ -1.52
SF3B3-214ENST00000572365 RCE1Q9Y256 329 aa5.55□□□□□ -1.52
SF3B3-214ENST00000572365 SETD2Q9BYW2 2564 aaPredicted RBP5.55□□□□□ -1.52
SF3B3-214ENST00000572365 LRRK2Q5S007 2527 aa5.54□□□□□ -1.52
SF3B3-214ENST00000572365 ZFHX3Q15911 3703 aa5.54□□□□□ -1.52
SF3B3-214ENST00000572365 AGAP5A6NIR3 686 aa5.54□□□□□ -1.52
SF3B3-214ENST00000572365 BTBD18B2RXH4 712 aa5.54□□□□□ -1.52
SF3B3-214ENST00000572365 SH2B2O14492 632 aaPredicted RBP5.54□□□□□ -1.52
SF3B3-214ENST00000572365 MGST3O14880 152 aa5.54□□□□□ -1.52
SF3B3-214ENST00000572365 TSPAN3O60637 253 aa5.54□□□□□ -1.52
SF3B3-214ENST00000572365 CHN1P15882 459 aa5.54□□□□□ -1.52
SF3B3-214ENST00000572365 XBP1P17861 261 aa5.54□□□□□ -1.52
SF3B3-214ENST00000572365 GLRA2P23416 452 aa5.54□□□□□ -1.52
SF3B3-214ENST00000572365 AXLP30530 894 aa5.54□□□□□ -1.52
SF3B3-214ENST00000572365 COPB1P53618 953 aaKnown RBP5.54□□□□□ -1.52
SF3B3-214ENST00000572365 RCAN1P53805 252 aa5.54□□□□□ -1.52
SF3B3-214ENST00000572365 PSMC5P62195 406 aa5.54□□□□□ -1.52
SF3B3-214ENST00000572365 BNC1Q01954 994 aa5.54□□□□□ -1.52
SF3B3-214ENST00000572365 BFSP1Q12934 665 aa5.54□□□□□ -1.52
SF3B3-214ENST00000572365 TRPC3Q13507 836 aa5.54□□□□□ -1.52
SF3B3-214ENST00000572365 ZC2HC1CQ53FD0 456 aaPredicted RBP5.54□□□□□ -1.52
SF3B3-214ENST00000572365 RETSATQ6NUM9 610 aa5.54□□□□□ -1.52
SF3B3-214ENST00000572365 KYAT3Q6YP21 454 aaKnown RBP5.54□□□□□ -1.52
SF3B3-214ENST00000572365 SLC29A4Q7RTT9 530 aa5.54□□□□□ -1.52
SF3B3-214ENST00000572365 LAS2Q8IYD9 372 aa5.54□□□□□ -1.52
SF3B3-214ENST00000572365 CMTM8Q8IZV2 173 aa5.54□□□□□ -1.52
SF3B3-214ENST00000572365 LRRC15Q8TF66 581 aa5.54□□□□□ -1.52
SF3B3-214ENST00000572365 HTRA1Q92743 480 aa5.54□□□□□ -1.52
SF3B3-214ENST00000572365 CNOT6LQ96LI5 555 aaKnown RBP5.54□□□□□ -1.52
SF3B3-214ENST00000572365 ZMAT2Q96NC0 199 aaKnown RBP5.54□□□□□ -1.52
SF3B3-214ENST00000572365 PPP1R10Q96QC0 940 aaKnown RBP5.54□□□□□ -1.52
SF3B3-214ENST00000572365 SLC22A12Q96S37 553 aa5.54□□□□□ -1.52
SF3B3-214ENST00000572365 TIMP4Q99727 224 aa5.54□□□□□ -1.52
SF3B3-214ENST00000572365 MACROD1Q9BQ69 325 aa5.54□□□□□ -1.52
SF3B3-214ENST00000572365 PDZD7Q9H5P4 517 aa5.54□□□□□ -1.52
SF3B3-214ENST00000572365 TASP1Q9H6P5 420 aa5.54□□□□□ -1.52
SF3B3-214ENST00000572365 TRPC7Q9HCX4 862 aa5.54□□□□□ -1.52
SF3B3-214ENST00000572365 DUS2Q9NX74 493 aaKnown RBP5.54□□□□□ -1.52
SF3B3-214ENST00000572365 BARHL2Q9NY43 387 aa5.54□□□□□ -1.52
SF3B3-214ENST00000572365 PACSIN3Q9UKS6 424 aa5.54□□□□□ -1.52
SF3B3-214ENST00000572365 TBX20Q9UMR3 447 aa5.54□□□□□ -1.52
SF3B3-214ENST00000572365 VPS4AQ9UN37 437 aa5.54□□□□□ -1.52
SF3B3-214ENST00000572365 SLCO1B1Q9Y6L6 691 aa5.54□□□□□ -1.52
SF3B3-214ENST00000572365 TCHHQ07283 1943 aa5.54□□□□□ -1.52
SF3B3-214ENST00000572365 SCN1AP35498 2009 aa5.53□□□□□ -1.52
SF3B3-214ENST00000572365 CCDC196A0A1B0GTZ2 297 aa5.53□□□□□ -1.52
SF3B3-214ENST00000572365 SMIM28A0A1B0GU29 152 aa5.53□□□□□ -1.52
SF3B3-214ENST00000572365 VWA3AA6NCI4 1184 aa5.53□□□□□ -1.52
SF3B3-214ENST00000572365 H7C1Q1 480 aa5.53□□□□□ -1.52
SF3B3-214ENST00000572365 ASAP2O43150 1006 aa5.53□□□□□ -1.52
SF3B3-214ENST00000572365 EPB41L2O43491 1005 aaKnown RBP5.53□□□□□ -1.52
SF3B3-214ENST00000572365 TRAPPC3O43617 180 aa5.53□□□□□ -1.52
SF3B3-214ENST00000572365 MT-CO3P00414 261 aa5.53□□□□□ -1.52
SF3B3-214ENST00000572365 ALDOAP04075 364 aaKnown RBP5.53□□□□□ -1.52
SF3B3-214ENST00000572365 PEPDP12955 493 aa5.53□□□□□ -1.52
SF3B3-214ENST00000572365 GP1BBP13224 206 aa5.53□□□□□ -1.52
SF3B3-214ENST00000572365 MARCKSP29966 332 aaPredicted RBP5.53□□□□□ -1.52
SF3B3-214ENST00000572365 YWHABP31946 246 aaKnown RBP5.53□□□□□ -1.52
SF3B3-214ENST00000572365 SFNP31947 248 aa5.53□□□□□ -1.52
SF3B3-214ENST00000572365 CXCR5P32302 372 aa5.53□□□□□ -1.52
SF3B3-214ENST00000572365 QARSP47897 775 aaKnown RBP5.53□□□□□ -1.52
SF3B3-214ENST00000572365 PCP4P48539 62 aa5.53□□□□□ -1.52
SF3B3-214ENST00000572365 SETQ01105 290 aaPredicted RBP5.53□□□□□ -1.52
SF3B3-214ENST00000572365 KDSRQ06136 332 aa5.53□□□□□ -1.52
SF3B3-214ENST00000572365 MAPK7Q13164 816 aa5.53□□□□□ -1.52
SF3B3-214ENST00000572365 DNAJC3Q13217 504 aa5.53□□□□□ -1.52
SF3B3-214ENST00000572365 HNRNPDQ14103 355 aaKnown RBP5.53□□□□□ -1.52
SF3B3-214ENST00000572365 ERCC6LQ2NKX8 1250 aa5.53□□□□□ -1.52
SF3B3-214ENST00000572365 HLA-BQ31612 363 aa5.53□□□□□ -1.52
SF3B3-214ENST00000572365 FAM153CQ494X1 144 aa5.53□□□□□ -1.52
SF3B3-214ENST00000572365 TPGS2Q68CL5 300 aa5.53□□□□□ -1.52
SF3B3-214ENST00000572365 NAPRTQ6XQN6 538 aa5.53□□□□□ -1.52
SF3B3-214ENST00000572365 RTL10Q7L3V2 364 aa5.53□□□□□ -1.52
SF3B3-214ENST00000572365 EFCAB13Q8IY85 973 aa5.53□□□□□ -1.52
SF3B3-214ENST00000572365 ZCCHC9Q8N567 271 aaKnown RBP5.53□□□□□ -1.52
SF3B3-214ENST00000572365 IL17RCQ8NAC3 791 aa5.53□□□□□ -1.52
SF3B3-214ENST00000572365 LSM14AQ8ND56 463 aaKnown RBP5.53□□□□□ -1.52
SF3B3-214ENST00000572365 CEP76Q8TAP6 659 aa5.53□□□□□ -1.52
SF3B3-214ENST00000572365 PIGOQ8TEQ8 1089 aa5.53□□□□□ -1.52
SF3B3-214ENST00000572365 CLEC4CQ8WTT0 213 aa5.53□□□□□ -1.52
SF3B3-214ENST00000572365 AKAP1Q92667 903 aaKnown RBP eCLIP5.53□□□□□ -1.52
SF3B3-214ENST00000572365 RIT2Q99578 217 aa5.53□□□□□ -1.52
SF3B3-214ENST00000572365 SEPT5Q99719 369 aaPredicted RBP5.53□□□□□ -1.52
SF3B3-214ENST00000572365 KIFC3Q9BVG8 833 aa5.53□□□□□ -1.52
SF3B3-214ENST00000572365 POLR3FQ9H1D9 316 aaPredicted RBP5.53□□□□□ -1.52
SF3B3-214ENST00000572365 RMI1Q9H9A7 625 aa5.53□□□□□ -1.52
SF3B3-214ENST00000572365 TMEM51Q9NW97 253 aa5.53□□□□□ -1.52
SF3B3-214ENST00000572365 MMP17Q9ULZ9 603 aa5.53□□□□□ -1.52
SF3B3-214ENST00000572365 COPG1Q9Y678 874 aaKnown RBP5.53□□□□□ -1.52
SF3B3-214ENST00000572365 MED13Q9UHV7 2174 aa5.53□□□□□ -1.52
SF3B3-214ENST00000572365 UQCRHLA0A096LP55 91 aa5.52□□□□□ -1.53
SF3B3-214ENST00000572365 IGHV1OR15-9A0A0B4J2B8 117 aa5.52□□□□□ -1.53
SF3B3-214ENST00000572365 A0A1B0GVT2 93 aa5.52□□□□□ -1.53
SF3B3-214ENST00000572365 CLIC1O00299 241 aa5.52□□□□□ -1.53
SF3B3-214ENST00000572365 PRRG2O14669 202 aa5.52□□□□□ -1.53
SF3B3-214ENST00000572365 AP5Z1O43299 807 aa5.52□□□□□ -1.53
SF3B3-214ENST00000572365 UQCRHP07919 91 aa5.52□□□□□ -1.53
SF3B3-214ENST00000572365 CSF1P09603 554 aa5.52□□□□□ -1.53
SF3B3-214ENST00000572365 GABRG2P18507 467 aa5.52□□□□□ -1.53
SF3B3-214ENST00000572365 WT1P19544 449 aaPredicted RBP5.52□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 61.2 ms