RNA–Protein interactions for RNA: ENST00000569950.1

VPS35-211, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 1,096 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-211ENST00000569950 C17orf82Q86X59 251 aaPredicted RBP9.14□□□□□ -0.95
VPS35-211ENST00000569950 GATAD2AQ86YP4 633 aa9.14□□□□□ -0.95
VPS35-211ENST00000569950 RASGRP3Q8IV61 690 aa9.14□□□□□ -0.95
VPS35-211ENST00000569950 PALM2Q8IXS6 379 aa9.14□□□□□ -0.95
VPS35-211ENST00000569950 KRT222Q8N1A0 295 aa9.14□□□□□ -0.95
VPS35-211ENST00000569950 MYRIPQ8NFW9 859 aa9.14□□□□□ -0.95
VPS35-211ENST00000569950 BAHD1Q8TBE0 780 aaPredicted RBP9.14□□□□□ -0.95
VPS35-211ENST00000569950 CAVIN3Q969G5 261 aa9.14□□□□□ -0.95
VPS35-211ENST00000569950 OR2M4Q96R27 311 aa9.14□□□□□ -0.95
VPS35-211ENST00000569950 TIMM29Q9BSF4 260 aa9.14□□□□□ -0.95
VPS35-211ENST00000569950 FAM167BQ9BTA0 163 aa9.14□□□□□ -0.95
VPS35-211ENST00000569950 RMI1Q9H9A7 625 aa9.14□□□□□ -0.95
VPS35-211ENST00000569950 SPATS2LQ9NUQ6 558 aaKnown RBP9.14□□□□□ -0.95
VPS35-211ENST00000569950 INTS10Q9NVR2 710 aaKnown RBP9.14□□□□□ -0.95
VPS35-211ENST00000569950 SCHIP1Q9P0W5 487 aaPredicted RBP9.14□□□□□ -0.95
VPS35-211ENST00000569950 NCDNQ9UBB6 729 aa9.14□□□□□ -0.95
VPS35-211ENST00000569950 APOBEC3BQ9UH17 382 aaKnown RBP9.14□□□□□ -0.95
VPS35-211ENST00000569950 CRYL1Q9Y2S2 319 aa9.14□□□□□ -0.95
VPS35-211ENST00000569950 SLC5A10A0PJK1 596 aa9.13□□□□□ -0.95
VPS35-211ENST00000569950 LMO7DNF2Z398 122 aa9.13□□□□□ -0.95
VPS35-211ENST00000569950 TRIM38O00635 465 aa9.13□□□□□ -0.95
VPS35-211ENST00000569950 YY2O15391 372 aa9.13□□□□□ -0.95
VPS35-211ENST00000569950 AQP9O43315 295 aa9.13□□□□□ -0.95
VPS35-211ENST00000569950 NOBOXO60393 691 aa9.13□□□□□ -0.95
VPS35-211ENST00000569950 CBFA2T3O75081 653 aa9.13□□□□□ -0.95
VPS35-211ENST00000569950 SPAG6O75602 509 aa9.13□□□□□ -0.95
VPS35-211ENST00000569950 POP7O75817 140 aaKnown RBP9.13□□□□□ -0.95
VPS35-211ENST00000569950 AP2A2O94973 939 aa9.13□□□□□ -0.95
VPS35-211ENST00000569950 ASMTLO95671 621 aa9.13□□□□□ -0.95
VPS35-211ENST00000569950 SHBGP04278 402 aa9.13□□□□□ -0.95
VPS35-211ENST00000569950 ACP5P13686 325 aa9.13□□□□□ -0.95
VPS35-211ENST00000569950 MSH3P20585 1137 aa9.13□□□□□ -0.95
VPS35-211ENST00000569950 HTR1BP28222 390 aa9.13□□□□□ -0.95
VPS35-211ENST00000569950 CCR7P32248 378 aa9.13□□□□□ -0.95
VPS35-211ENST00000569950 HSD17B3P37058 310 aa9.13□□□□□ -0.95
VPS35-211ENST00000569950 CLCN7P51798 805 aa9.13□□□□□ -0.95
VPS35-211ENST00000569950 CDKN2DP55273 166 aa9.13□□□□□ -0.95
VPS35-211ENST00000569950 ARHGAP8P85298 464 aa9.13□□□□□ -0.95
VPS35-211ENST00000569950 NFE2L1Q14494 772 aa9.13□□□□□ -0.95
VPS35-211ENST00000569950 SLC29A2Q14542 456 aa9.13□□□□□ -0.95
VPS35-211ENST00000569950 SLMAPQ14BN4 828 aa9.13□□□□□ -0.95
VPS35-211ENST00000569950 PLA2G4EQ3MJ16 856 aa9.13□□□□□ -0.95
VPS35-211ENST00000569950 PRRT3Q5FWE3 981 aa9.13□□□□□ -0.95
VPS35-211ENST00000569950 LYPLAL1Q5VWZ2 237 aa9.13□□□□□ -0.95
VPS35-211ENST00000569950 NAPRTQ6XQN6 538 aa9.13□□□□□ -0.95
VPS35-211ENST00000569950 TRMT10CQ7L0Y3 403 aaKnown RBP9.13□□□□□ -0.95
VPS35-211ENST00000569950 RD3Q7Z3Z2 195 aa9.13□□□□□ -0.95
VPS35-211ENST00000569950 LRRTM4Q86VH4 590 aa9.13□□□□□ -0.95
VPS35-211ENST00000569950 SLC26A11Q86WA9 606 aa9.13□□□□□ -0.95
VPS35-211ENST00000569950 GALNT13Q8IUC8 556 aa9.13□□□□□ -0.95
VPS35-211ENST00000569950 VRK3Q8IV63 474 aa9.13□□□□□ -0.95
VPS35-211ENST00000569950 MREGQ8N565 214 aa9.13□□□□□ -0.95
VPS35-211ENST00000569950 UHMK1Q8TAS1 419 aaKnown RBP9.13□□□□□ -0.95
VPS35-211ENST00000569950 GDAP1Q8TB36 358 aa9.13□□□□□ -0.95
VPS35-211ENST00000569950 HEXDCQ8WVB3 486 aa9.13□□□□□ -0.95
VPS35-211ENST00000569950 DCAKDQ8WVC6 231 aa9.13□□□□□ -0.95
VPS35-211ENST00000569950 PATE1Q8WXA2 126 aa9.13□□□□□ -0.95
VPS35-211ENST00000569950 OLFM1Q99784 485 aa9.13□□□□□ -0.95
VPS35-211ENST00000569950 EDEM2Q9BV94 578 aa9.13□□□□□ -0.95
VPS35-211ENST00000569950 NUSAP1Q9BXS6 441 aaKnown RBP9.13□□□□□ -0.95
VPS35-211ENST00000569950 TSPYL1Q9H0U9 437 aa9.13□□□□□ -0.95
VPS35-211ENST00000569950 LATS2Q9NRM7 1088 aa9.13□□□□□ -0.95
VPS35-211ENST00000569950 TBC1D29Q9UFV1 150 aa9.13□□□□□ -0.95
VPS35-211ENST00000569950 ZNHIT2Q9UHR6 403 aa9.13□□□□□ -0.95
VPS35-211ENST00000569950 PCOLCE2Q9UKZ9 415 aa9.13□□□□□ -0.95
VPS35-211ENST00000569950 KCNK6Q9Y257 313 aa9.13□□□□□ -0.95
VPS35-211ENST00000569950 WDR37Q9Y2I8 494 aa9.13□□□□□ -0.95
VPS35-211ENST00000569950 NFS1Q9Y697 457 aa9.13□□□□□ -0.95
VPS35-211ENST00000569950 CSNK1G3Q9Y6M4 447 aa9.13□□□□□ -0.95
VPS35-211ENST00000569950 UNC13CQ8NB66 2214 aa9.13□□□□□ -0.95
VPS35-211ENST00000569950 AKAP13Q12802 2813 aa9.12□□□□□ -0.95
VPS35-211ENST00000569950 MGAT4DA6NG13 374 aa9.12□□□□□ -0.95
VPS35-211ENST00000569950 KMOO15229 486 aa9.12□□□□□ -0.95
VPS35-211ENST00000569950 CASC3O15234 703 aaKnown RBP9.12□□□□□ -0.95
VPS35-211ENST00000569950 GFRA3O60609 400 aa9.12□□□□□ -0.95
VPS35-211ENST00000569950 GPC4O75487 556 aa9.12□□□□□ -0.95
VPS35-211ENST00000569950 CER1O95813 267 aa9.12□□□□□ -0.95
VPS35-211ENST00000569950 TSPAN12O95859 305 aa9.12□□□□□ -0.95
VPS35-211ENST00000569950 TNFP01375 233 aa9.12□□□□□ -0.95
VPS35-211ENST00000569950 SYPP08247 313 aa9.12□□□□□ -0.95
VPS35-211ENST00000569950 PKMP14618 531 aaKnown RBP9.12□□□□□ -0.95
VPS35-211ENST00000569950 CD9P21926 228 aa9.12□□□□□ -0.95
VPS35-211ENST00000569950 FDXRP22570 491 aa9.12□□□□□ -0.95
VPS35-211ENST00000569950 AOAHP28039 575 aa9.12□□□□□ -0.95
VPS35-211ENST00000569950 PDHA2P29803 388 aa9.12□□□□□ -0.95
VPS35-211ENST00000569950 FMO4P31512 558 aa9.12□□□□□ -0.95
VPS35-211ENST00000569950 AKT1P31749 480 aa9.12□□□□□ -0.95
VPS35-211ENST00000569950 GMPRP36959 345 aa9.12□□□□□ -0.95
VPS35-211ENST00000569950 CCT8P50990 548 aa9.12□□□□□ -0.95
VPS35-211ENST00000569950 EIF3BP55884 814 aaKnown RBP9.12□□□□□ -0.95
VPS35-211ENST00000569950 HNRNPKP61978 463 aaKnown RBP eCLIP9.12□□□□□ -0.95
VPS35-211ENST00000569950 THOC5Q13769 683 aaKnown RBP9.12□□□□□ -0.95
VPS35-211ENST00000569950 LRP8Q14114 963 aa9.12□□□□□ -0.95
VPS35-211ENST00000569950 PROX2Q3B8N5 592 aa9.12□□□□□ -0.95
VPS35-211ENST00000569950 AARS2Q5JTZ9 985 aaKnown RBP9.12□□□□□ -0.95
VPS35-211ENST00000569950 RNF187Q5TA31 235 aaPredicted RBP9.12□□□□□ -0.95
VPS35-211ENST00000569950 METRNLQ641Q3 311 aa9.12□□□□□ -0.95
VPS35-211ENST00000569950 EMBQ6PCB8 327 aa9.12□□□□□ -0.95
VPS35-211ENST00000569950 OGFOD3Q6PK18 319 aa9.12□□□□□ -0.95
VPS35-211ENST00000569950 IL27RAQ6UWB1 636 aa9.12□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms