RNA–Protein interactions for RNA: ENST00000569406.5

CLK3-226, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 3,591 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-226ENST00000569406 HES5Q5TA89 166 aa10.72□□□□□ -0.69
CLK3-226ENST00000569406 ZPBP2Q6X784 338 aa10.72□□□□□ -0.69
CLK3-226ENST00000569406 MILR1Q7Z6M3 343 aa10.72□□□□□ -0.69
CLK3-226ENST00000569406 TFAP2DQ7Z6R9 452 aa10.72□□□□□ -0.69
CLK3-226ENST00000569406 RHPN2Q8IUC4 686 aa10.72□□□□□ -0.69
CLK3-226ENST00000569406 TRIM48Q8IWZ4 208 aa10.72□□□□□ -0.69
CLK3-226ENST00000569406 NUAK2Q9H093 628 aa10.72□□□□□ -0.69
CLK3-226ENST00000569406 WDR41Q9HAD4 459 aa10.72□□□□□ -0.69
CLK3-226ENST00000569406 CATSPERZQ9NTU4 200 aa10.72□□□□□ -0.69
CLK3-226ENST00000569406 PNPOQ9NVS9 261 aa10.72□□□□□ -0.69
CLK3-226ENST00000569406 CAMSAP3Q9P1Y5 1249 aaPredicted RBP10.72□□□□□ -0.69
CLK3-226ENST00000569406 AGO1Q9UL18 857 aaKnown RBP10.72□□□□□ -0.69
CLK3-226ENST00000569406 OGDHLQ9ULD0 1010 aa10.72□□□□□ -0.69
CLK3-226ENST00000569406 SNX5Q9Y5X3 404 aa10.72□□□□□ -0.69
CLK3-226ENST00000569406 GATCO43716 136 aaKnown RBP10.72□□□□□ -0.69
CLK3-226ENST00000569406 HK1P19367 917 aa10.72□□□□□ -0.69
CLK3-226ENST00000569406 GNA15P30679 374 aa10.72□□□□□ -0.69
CLK3-226ENST00000569406 HMGCLP35914 325 aa10.72□□□□□ -0.69
CLK3-226ENST00000569406 SMAD4Q13485 552 aaKnown RBP10.72□□□□□ -0.69
CLK3-226ENST00000569406 RIN1Q13671 783 aa10.72□□□□□ -0.69
CLK3-226ENST00000569406 SIM2Q14190 667 aaPredicted RBP10.72□□□□□ -0.69
CLK3-226ENST00000569406 AMHR2Q16671 573 aa10.72□□□□□ -0.69
CLK3-226ENST00000569406 PMF1Q6P1K2 205 aa10.72□□□□□ -0.69
CLK3-226ENST00000569406 TXNDC11Q6PKC3 985 aa10.72□□□□□ -0.69
CLK3-226ENST00000569406 TNS4Q8IZW8 715 aa10.72□□□□□ -0.69
CLK3-226ENST00000569406 LINC01465Q8N7H1 131 aa10.72□□□□□ -0.69
CLK3-226ENST00000569406 ZNF557Q8N988 423 aaPredicted RBP10.72□□□□□ -0.69
CLK3-226ENST00000569406 PHOSPHO2Q8TCD6 241 aa10.72□□□□□ -0.69
CLK3-226ENST00000569406 CA5BP1Q8WTZ4 195 aa10.72□□□□□ -0.69
CLK3-226ENST00000569406 NEDD4LQ96PU5 975 aa10.72□□□□□ -0.69
CLK3-226ENST00000569406 SDCBP2Q9H190 292 aa10.72□□□□□ -0.69
CLK3-226ENST00000569406 C14orf119Q9NWQ9 140 aa10.72□□□□□ -0.69
CLK3-226ENST00000569406 NT5C1B-RDH14C9J2C7 533 aa10.72□□□□□ -0.69
CLK3-226ENST00000569406 CCNYL3P0C7X3 344 aa10.72□□□□□ -0.69
CLK3-226ENST00000569406 IDH3AP50213 366 aa10.72□□□□□ -0.69
CLK3-226ENST00000569406 GRM1Q13255 1194 aa10.72□□□□□ -0.69
CLK3-226ENST00000569406 TUBB3Q13509 450 aa10.72□□□□□ -0.69
CLK3-226ENST00000569406 DMC1Q14565 340 aa10.72□□□□□ -0.69
CLK3-226ENST00000569406 AANATQ16613 207 aa10.72□□□□□ -0.69
CLK3-226ENST00000569406 CELF3Q5SZQ8 465 aaKnown RBP10.72□□□□□ -0.69
CLK3-226ENST00000569406 C5orf46Q6UWT4 87 aa10.72□□□□□ -0.69
CLK3-226ENST00000569406 NRARPQ7Z6K4 114 aa10.72□□□□□ -0.69
CLK3-226ENST00000569406 KATNAL2Q8IYT4 538 aa10.72□□□□□ -0.69
CLK3-226ENST00000569406 ADAM32Q8TC27 787 aa10.72□□□□□ -0.69
CLK3-226ENST00000569406 CHAC2Q8WUX2 184 aa10.72□□□□□ -0.69
CLK3-226ENST00000569406 UFD1Q92890 307 aa10.72□□□□□ -0.69
CLK3-226ENST00000569406 MAGEB10Q96LZ2 347 aaPredicted RBP10.72□□□□□ -0.69
CLK3-226ENST00000569406 GAD1Q99259 594 aa10.72□□□□□ -0.69
CLK3-226ENST00000569406 LHX5Q9H2C1 402 aa10.72□□□□□ -0.69
CLK3-226ENST00000569406 FZD8Q9H461 694 aa10.72□□□□□ -0.69
CLK3-226ENST00000569406 PDGFCQ9NRA1 345 aa10.72□□□□□ -0.69
CLK3-226ENST00000569406 RAB23Q9ULC3 237 aa10.72□□□□□ -0.69
CLK3-226ENST00000569406 ATXN7L1Q9ULK2 861 aaPredicted RBP10.72□□□□□ -0.69
CLK3-226ENST00000569406 PLXNB2O15031 1838 aa10.72□□□□□ -0.69
CLK3-226ENST00000569406 H0YCG3 227 aa10.71□□□□□ -0.69
CLK3-226ENST00000569406 IL1BP01584 269 aa10.71□□□□□ -0.69
CLK3-226ENST00000569406 SLC2A3P11169 496 aa10.71□□□□□ -0.69
CLK3-226ENST00000569406 UGT2B10P36537 528 aa10.71□□□□□ -0.69
CLK3-226ENST00000569406 ARCN1P48444 511 aaKnown RBP10.71□□□□□ -0.69
CLK3-226ENST00000569406 AP1S2P56377 157 aa10.71□□□□□ -0.69
CLK3-226ENST00000569406 NCS1P62166 190 aa10.71□□□□□ -0.69
CLK3-226ENST00000569406 LGALS3BPQ08380 585 aa10.71□□□□□ -0.69
CLK3-226ENST00000569406 STX5Q13190 355 aa10.71□□□□□ -0.69
CLK3-226ENST00000569406 IMPG1Q17R60 797 aa10.71□□□□□ -0.69
CLK3-226ENST00000569406 ADPRMQ3LIE5 342 aa10.71□□□□□ -0.69
CLK3-226ENST00000569406 ZBTB37Q5TC79 503 aa10.71□□□□□ -0.69
CLK3-226ENST00000569406 EEF1DP3Q658K8 133 aa10.71□□□□□ -0.69
CLK3-226ENST00000569406 SLFN12LQ6IEE8 588 aa10.71□□□□□ -0.69
CLK3-226ENST00000569406 DBX2Q6ZNG2 339 aa10.71□□□□□ -0.69
CLK3-226ENST00000569406 BNIPLQ7Z465 357 aa10.71□□□□□ -0.69
CLK3-226ENST00000569406 ZDHHC17Q8IUH5 632 aa10.71□□□□□ -0.69
CLK3-226ENST00000569406 MCOLN3Q8TDD5 553 aa10.71□□□□□ -0.69
CLK3-226ENST00000569406 PTP4A1Q93096 173 aa10.71□□□□□ -0.69
CLK3-226ENST00000569406 ASPSCR1Q9BZE9 553 aa10.71□□□□□ -0.69
CLK3-226ENST00000569406 CXCL16Q9H2A7 254 aa10.71□□□□□ -0.69
CLK3-226ENST00000569406 PPCSQ9HAB8 311 aa10.71□□□□□ -0.69
CLK3-226ENST00000569406 LRRC4Q9HBW1 653 aa10.71□□□□□ -0.69
CLK3-226ENST00000569406 SLAMF7Q9NQ25 335 aa10.71□□□□□ -0.69
CLK3-226ENST00000569406 FBXL12Q9NXK8 326 aa10.71□□□□□ -0.69
CLK3-226ENST00000569406 SAE1Q9UBE0 346 aaPredicted RBP10.71□□□□□ -0.69
CLK3-226ENST00000569406 BAIAP2Q9UQB8 552 aa10.71□□□□□ -0.69
CLK3-226ENST00000569406 U3KQV3 271 aa10.71□□□□□ -0.69
CLK3-226ENST00000569406 E2F8A0AVK6 867 aa10.71□□□□□ -0.69
CLK3-226ENST00000569406 F8VP50 259 aa10.71□□□□□ -0.69
CLK3-226ENST00000569406 DFFAO00273 331 aa10.71□□□□□ -0.69
CLK3-226ENST00000569406 ZBTB14O43829 449 aa10.71□□□□□ -0.69
CLK3-226ENST00000569406 SLC22A5O76082 557 aa10.71□□□□□ -0.69
CLK3-226ENST00000569406 CAPNS1P04632 268 aa10.71□□□□□ -0.69
CLK3-226ENST00000569406 PTX3P26022 381 aaPredicted RBP10.71□□□□□ -0.69
CLK3-226ENST00000569406 ACSL1P33121 698 aa10.71□□□□□ -0.69
CLK3-226ENST00000569406 OSTNP61366 133 aa10.71□□□□□ -0.69
CLK3-226ENST00000569406 DGCR6Q14129 220 aa10.71□□□□□ -0.69
CLK3-226ENST00000569406 XAF1Q6GPH4 301 aa10.71□□□□□ -0.69
CLK3-226ENST00000569406 SCYL2Q6P3W7 929 aa10.71□□□□□ -0.69
CLK3-226ENST00000569406 OR8H2Q8N162 312 aa10.71□□□□□ -0.69
CLK3-226ENST00000569406 PIK3C3Q8NEB9 887 aa10.71□□□□□ -0.69
CLK3-226ENST00000569406 OR8K5Q8NH50 307 aa10.71□□□□□ -0.69
CLK3-226ENST00000569406 GDF15Q99988 308 aa10.71□□□□□ -0.69
CLK3-226ENST00000569406 ASB7Q9H672 318 aa10.71□□□□□ -0.69
CLK3-226ENST00000569406 CATSPERBQ9H7T0 1116 aa10.71□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 49.9 ms