RNA–Protein interactions for RNA: ENST00000568612.5

VPS35-208, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 697 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-208ENST00000568612 NOGQ13253 232 aa3.24□□□□□ -1.89
VPS35-208ENST00000568612 NAB1Q13506 487 aa3.24□□□□□ -1.89
VPS35-208ENST00000568612 CUL2Q13617 745 aa3.24□□□□□ -1.89
VPS35-208ENST00000568612 ACVR2BQ13705 512 aa3.24□□□□□ -1.89
VPS35-208ENST00000568612 ATP1A4Q13733 1029 aa3.24□□□□□ -1.89
VPS35-208ENST00000568612 GCKRQ14397 625 aa3.24□□□□□ -1.89
VPS35-208ENST00000568612 GALNT3Q14435 633 aa3.24□□□□□ -1.89
VPS35-208ENST00000568612 LTB4RQ15722 352 aa3.24□□□□□ -1.89
VPS35-208ENST00000568612 ASIC2Q16515 512 aa3.24□□□□□ -1.89
VPS35-208ENST00000568612 PFKFB3Q16875 520 aaPredicted RBP3.24□□□□□ -1.89
VPS35-208ENST00000568612 TRIM16LQ309B1 348 aa3.24□□□□□ -1.89
VPS35-208ENST00000568612 KRTAP15-1Q3LI76 137 aa3.24□□□□□ -1.89
VPS35-208ENST00000568612 NADK2Q4G0N4 442 aa3.24□□□□□ -1.89
VPS35-208ENST00000568612 ANKRD20A4Q4UJ75 823 aa3.24□□□□□ -1.89
VPS35-208ENST00000568612 TMEM240Q5SV17 173 aa3.24□□□□□ -1.89
VPS35-208ENST00000568612 IFIT1BQ5T764 474 aaKnown RBP3.24□□□□□ -1.89
VPS35-208ENST00000568612 ARHGEF16Q5VV41 709 aa3.24□□□□□ -1.89
VPS35-208ENST00000568612 PAPD7Q5XG87 772 aaKnown RBP3.24□□□□□ -1.89
VPS35-208ENST00000568612 PCSK4Q6UW60 755 aa3.24□□□□□ -1.89
VPS35-208ENST00000568612 IZUMO2Q6UXV1 221 aa3.24□□□□□ -1.89
VPS35-208ENST00000568612 ARPINQ7Z6K5 226 aa3.24□□□□□ -1.89
VPS35-208ENST00000568612 C2CD5Q86YS7 1000 aa3.24□□□□□ -1.89
VPS35-208ENST00000568612 RASGRP3Q8IV61 690 aa3.24□□□□□ -1.89
VPS35-208ENST00000568612 TPH2Q8IWU9 490 aa3.24□□□□□ -1.89
VPS35-208ENST00000568612 DCP1BQ8IZD4 617 aaKnown RBP3.24□□□□□ -1.89
VPS35-208ENST00000568612 ADGRF2Q8IZF7 708 aa3.24□□□□□ -1.89
VPS35-208ENST00000568612 SYCE1Q8N0S2 351 aa3.24□□□□□ -1.89
VPS35-208ENST00000568612 TAGAPQ8N103 731 aa3.24□□□□□ -1.89
VPS35-208ENST00000568612 CRYBG2Q8N1P7 616 aa3.24□□□□□ -1.89
VPS35-208ENST00000568612 CFAP52Q8N1V2 620 aa3.24□□□□□ -1.89
VPS35-208ENST00000568612 VGLL2Q8N8G2 317 aa3.24□□□□□ -1.89
VPS35-208ENST00000568612 ANKFN1Q8N957 763 aa3.24□□□□□ -1.89
VPS35-208ENST00000568612 EIF1ADQ8N9N8 165 aaKnown RBP3.24□□□□□ -1.89
VPS35-208ENST00000568612 TC2NQ8N9U0 490 aa3.24□□□□□ -1.89
VPS35-208ENST00000568612 FSIP1Q8NA03 581 aa3.24□□□□□ -1.89
VPS35-208ENST00000568612 ZNF527Q8NB42 609 aa3.24□□□□□ -1.89
VPS35-208ENST00000568612 SRFBP1Q8NEF9 429 aaKnown RBP3.24□□□□□ -1.89
VPS35-208ENST00000568612 LPCAT1Q8NF37 534 aa3.24□□□□□ -1.89
VPS35-208ENST00000568612 OR52N1Q8NH53 320 aa3.24□□□□□ -1.89
VPS35-208ENST00000568612 HUS1BQ8NHY5 278 aa3.24□□□□□ -1.89
VPS35-208ENST00000568612 VANGL1Q8TAA9 524 aaPredicted RBP3.24□□□□□ -1.89
VPS35-208ENST00000568612 DEPDC1BQ8WUY9 529 aa3.24□□□□□ -1.89
VPS35-208ENST00000568612 PSPC1Q8WXF1 523 aaKnown RBP3.24□□□□□ -1.89
VPS35-208ENST00000568612 LINC00476Q8WZB0 136 aa3.24□□□□□ -1.89
VPS35-208ENST00000568612 TANKQ92844 425 aa3.24□□□□□ -1.89
VPS35-208ENST00000568612 ZUFSPQ96AP4 578 aa3.24□□□□□ -1.89
VPS35-208ENST00000568612 PHF21AQ96BD5 680 aa3.24□□□□□ -1.89
VPS35-208ENST00000568612 MTBPQ96DY7 904 aa3.24□□□□□ -1.89
VPS35-208ENST00000568612 PDXPQ96GD0 296 aa3.24□□□□□ -1.89
VPS35-208ENST00000568612 VPS39Q96JC1 886 aa3.24□□□□□ -1.89
VPS35-208ENST00000568612 SNX18Q96RF0 628 aa3.24□□□□□ -1.89
VPS35-208ENST00000568612 TRIB1Q96RU8 372 aa3.24□□□□□ -1.89
VPS35-208ENST00000568612 SEC22CQ9BRL7 303 aa3.24□□□□□ -1.89
VPS35-208ENST00000568612 MROQ9BYG7 248 aa3.24□□□□□ -1.89
VPS35-208ENST00000568612 GPR61Q9BZJ8 451 aa3.24□□□□□ -1.89
VPS35-208ENST00000568612 DCLK3Q9C098 648 aa3.24□□□□□ -1.89
VPS35-208ENST00000568612 TINAGL1Q9GZM7 467 aaPredicted RBP3.24□□□□□ -1.89
VPS35-208ENST00000568612 POLR1EQ9GZS1 481 aaKnown RBP3.24□□□□□ -1.89
VPS35-208ENST00000568612 TWSG1Q9GZX9 223 aa3.24□□□□□ -1.89
VPS35-208ENST00000568612 RHBGQ9H310 441 aa3.24□□□□□ -1.89
VPS35-208ENST00000568612 SLA2Q9H6Q3 261 aa3.24□□□□□ -1.89
VPS35-208ENST00000568612 ZNF696Q9H7X3 374 aa3.24□□□□□ -1.89
VPS35-208ENST00000568612 RMND5AQ9H871 391 aa3.24□□□□□ -1.89
VPS35-208ENST00000568612 RSAD1Q9HA92 442 aa3.24□□□□□ -1.89
VPS35-208ENST00000568612 ALG13Q9NP73 1137 aaKnown RBP3.24□□□□□ -1.89
VPS35-208ENST00000568612 PRDM8Q9NQV8 689 aa3.24□□□□□ -1.89
VPS35-208ENST00000568612 ZC4H2Q9NQZ6 224 aa3.24□□□□□ -1.89
VPS35-208ENST00000568612 TMEM74BQ9NUR3 256 aa3.24□□□□□ -1.89
VPS35-208ENST00000568612 PARVAQ9NVD7 372 aa3.24□□□□□ -1.89
VPS35-208ENST00000568612 INTS13Q9NVM9 706 aa3.24□□□□□ -1.89
VPS35-208ENST00000568612 SAGE1Q9NXZ1 904 aa3.24□□□□□ -1.89
VPS35-208ENST00000568612 WWOXQ9NZC7 414 aa3.24□□□□□ -1.89
VPS35-208ENST00000568612 ACTR3BQ9P1U1 418 aa3.24□□□□□ -1.89
VPS35-208ENST00000568612 CFAP97Q9P2B7 532 aa3.24□□□□□ -1.89
VPS35-208ENST00000568612 RSL24D1Q9UHA3 163 aaKnown RBP3.24□□□□□ -1.89
VPS35-208ENST00000568612 NARFQ9UHQ1 456 aa3.24□□□□□ -1.89
VPS35-208ENST00000568612 TUBE1Q9UJT0 475 aa3.24□□□□□ -1.89
VPS35-208ENST00000568612 TNNQ9UQP3 1299 aa3.24□□□□□ -1.89
VPS35-208ENST00000568612 ANKRD6Q9Y2G4 727 aa3.24□□□□□ -1.89
VPS35-208ENST00000568612 PCDHA1Q9Y5I3 950 aa3.24□□□□□ -1.89
VPS35-208ENST00000568612 RAD54BQ9Y620 910 aa3.24□□□□□ -1.89
VPS35-208ENST00000568612 MYH7BA7E2Y1 1941 aa3.24□□□□□ -1.89
VPS35-208ENST00000568612 TNRQ92752 1358 aa3.24□□□□□ -1.89
VPS35-208ENST00000568612 KIAA0586Q9BVV6 1533 aa3.24□□□□□ -1.89
VPS35-208ENST00000568612 MAP2P11137 1827 aaKnown RBP3.23□□□□□ -1.89
VPS35-208ENST00000568612 MAST3O60307 1309 aa3.23□□□□□ -1.89
VPS35-208ENST00000568612 PRAMEF33A0A0G2JMD5 474 aa3.23□□□□□ -1.89
VPS35-208ENST00000568612 A0A1W2PQ72 361 aa3.23□□□□□ -1.89
VPS35-208ENST00000568612 GSTTP1A0A1W2PQM5 241 aa3.23□□□□□ -1.89
VPS35-208ENST00000568612 ZAR1LA6NP61 321 aa3.23□□□□□ -1.89
VPS35-208ENST00000568612 A8MXQ7 604 aa3.23□□□□□ -1.89
VPS35-208ENST00000568612 FAM25AB3EWG3 89 aa3.23□□□□□ -1.89
VPS35-208ENST00000568612 FAM25CB3EWG5 89 aa3.23□□□□□ -1.89
VPS35-208ENST00000568612 FAM25GB3EWG6 89 aa3.23□□□□□ -1.89
VPS35-208ENST00000568612 ERVV-1B6SEH8 477 aa3.23□□□□□ -1.89
VPS35-208ENST00000568612 NT5C1B-RDH14C9J2C7 533 aa3.23□□□□□ -1.89
VPS35-208ENST00000568612 HSBP1L1C9JCN9 74 aa3.23□□□□□ -1.89
VPS35-208ENST00000568612 H3BNX3 289 aa3.23□□□□□ -1.89
VPS35-208ENST00000568612 J3KRW8 73 aa3.23□□□□□ -1.89
VPS35-208ENST00000568612 CAPN9O14815 690 aa3.23□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms