RNA–Protein interactions for RNA: ENST00000568357.1

VPS39-210, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 593 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-210ENST00000568357 FAM83HQ6ZRV2 1179 aaPredicted RBP14.77□□□□□ -0.05
VPS39-210ENST00000568357 SNX20Q7Z614 316 aa14.77□□□□□ -0.05
VPS39-210ENST00000568357 NXPE1Q8N323 547 aa14.77□□□□□ -0.05
VPS39-210ENST00000568357 RASGEF1CQ8N431 466 aa14.77□□□□□ -0.05
VPS39-210ENST00000568357 DNAAF3Q8N9W5 541 aa14.77□□□□□ -0.05
VPS39-210ENST00000568357 STYXQ8WUJ0 223 aa14.77□□□□□ -0.05
VPS39-210ENST00000568357 PDLIM2Q96JY6 352 aa14.77□□□□□ -0.05
VPS39-210ENST00000568357 CASS4Q9NQ75 786 aa14.77□□□□□ -0.05
VPS39-210ENST00000568357 WASH6PQ9NQA3 447 aa14.77□□□□□ -0.05
VPS39-210ENST00000568357 TMEM9Q9P0T7 183 aa14.77□□□□□ -0.05
VPS39-210ENST00000568357 CRLS1Q9UJA2 301 aa14.77□□□□□ -0.05
VPS39-210ENST00000568357 DNMT3AQ9Y6K1 912 aaPredicted RBP14.77□□□□□ -0.05
VPS39-210ENST00000568357 OR52A4PA6NMU1 304 aa14.76□□□□□ -0.05
VPS39-210ENST00000568357 CDRT15L2A8MXV6 281 aa14.76□□□□□ -0.05
VPS39-210ENST00000568357 ZSCAN12O43309 604 aa14.76□□□□□ -0.05
VPS39-210ENST00000568357 KCNJ13O60928 360 aa14.76□□□□□ -0.05
VPS39-210ENST00000568357 APRTP07741 180 aa14.76□□□□□ -0.05
VPS39-210ENST00000568357 VCLP18206 1134 aa14.76□□□□□ -0.05
VPS39-210ENST00000568357 ITGALP20701 1170 aa14.76□□□□□ -0.05
VPS39-210ENST00000568357 ARSDP51689 593 aa14.76□□□□□ -0.05
VPS39-210ENST00000568357 LIMK2P53671 638 aa14.76□□□□□ -0.05
VPS39-210ENST00000568357 GPLD1P80108 840 aa14.76□□□□□ -0.05
VPS39-210ENST00000568357 DMPKQ09013 629 aa14.76□□□□□ -0.05
VPS39-210ENST00000568357 EIF3IQ13347 325 aaKnown RBP14.76□□□□□ -0.05
VPS39-210ENST00000568357 NFE2L1Q14494 772 aa14.76□□□□□ -0.05
VPS39-210ENST00000568357 C16orf72Q14CZ0 275 aa14.76□□□□□ -0.05
VPS39-210ENST00000568357 GPR33Q49SQ1 333 aa14.76□□□□□ -0.05
VPS39-210ENST00000568357 TMEM71Q6P5X7 295 aa14.76□□□□□ -0.05
VPS39-210ENST00000568357 PCSK4Q6UW60 755 aa14.76□□□□□ -0.05
VPS39-210ENST00000568357 XKR5Q6UX68 686 aa14.76□□□□□ -0.05
VPS39-210ENST00000568357 PPP1R21Q6ZMI0 780 aa14.76□□□□□ -0.05
VPS39-210ENST00000568357 GSTA5Q7RTV2 222 aa14.76□□□□□ -0.05
VPS39-210ENST00000568357 LURAP1LQ8IV03 231 aa14.76□□□□□ -0.05
VPS39-210ENST00000568357 SLC35F6Q8N357 371 aa14.76□□□□□ -0.05
VPS39-210ENST00000568357 RCBTB1Q8NDN9 531 aa14.76□□□□□ -0.05
VPS39-210ENST00000568357 OR4D9Q8NGE8 314 aa14.76□□□□□ -0.05
VPS39-210ENST00000568357 SH3KBP1Q96B97 665 aa14.76□□□□□ -0.05
VPS39-210ENST00000568357 ULK4Q96C45 1275 aa14.76□□□□□ -0.05
VPS39-210ENST00000568357 PBKQ96KB5 322 aa14.76□□□□□ -0.05
VPS39-210ENST00000568357 FCRL3Q96P31 734 aaPredicted RBP14.76□□□□□ -0.05
VPS39-210ENST00000568357 TBC1D10AQ9BXI6 508 aa14.76□□□□□ -0.05
VPS39-210ENST00000568357 HOMER3Q9NSC5 361 aa14.76□□□□□ -0.05
VPS39-210ENST00000568357 LOXL2Q9Y4K0 774 aa14.76□□□□□ -0.05
VPS39-210ENST00000568357 SLC30A1Q9Y6M5 507 aa14.76□□□□□ -0.05
VPS39-210ENST00000568357 TRBV5-4A0A0C4DH59 114 aa14.75□□□□□ -0.05
VPS39-210ENST00000568357 USP27XA6NNY8 438 aa14.75□□□□□ -0.05
VPS39-210ENST00000568357 PYCARD-AS1I3L0S3 204 aa14.75□□□□□ -0.05
VPS39-210ENST00000568357 VIPP01282 170 aa14.75□□□□□ -0.05
VPS39-210ENST00000568357 ITIH1P19827 911 aa14.75□□□□□ -0.05
VPS39-210ENST00000568357 PBLDP30039 288 aaPredicted RBP14.75□□□□□ -0.05
VPS39-210ENST00000568357 CCDC173Q0VFZ6 552 aa14.75□□□□□ -0.05
VPS39-210ENST00000568357 SKIDA1Q1XH10 827 aa14.75□□□□□ -0.05
VPS39-210ENST00000568357 ZRANB3Q5FWF4 1079 aa14.75□□□□□ -0.05
VPS39-210ENST00000568357 METRNLQ641Q3 311 aa14.75□□□□□ -0.05
VPS39-210ENST00000568357 TAS2R42Q7RTR8 314 aa14.75□□□□□ -0.05
VPS39-210ENST00000568357 SERPINA9Q86WD7 417 aa14.75□□□□□ -0.05
VPS39-210ENST00000568357 PIANPQ8IYJ0 282 aa14.75□□□□□ -0.05
VPS39-210ENST00000568357 OR10G6Q8NH81 332 aa14.75□□□□□ -0.05
VPS39-210ENST00000568357 COG1Q8WTW3 980 aa14.75□□□□□ -0.05
VPS39-210ENST00000568357 DCUN1D1Q96GG9 259 aa14.75□□□□□ -0.05
VPS39-210ENST00000568357 AHCYL2Q96HN2 611 aaKnown RBP14.75□□□□□ -0.05
VPS39-210ENST00000568357 NAF1Q96HR8 494 aaKnown RBP14.75□□□□□ -0.05
VPS39-210ENST00000568357 ZNF514Q96K75 400 aaPredicted RBP14.75□□□□□ -0.05
VPS39-210ENST00000568357 CCDC74BQ96LY2 380 aa14.75□□□□□ -0.05
VPS39-210ENST00000568357 ZNF778Q96MU6 729 aa14.75□□□□□ -0.05
VPS39-210ENST00000568357 COPS8Q99627 209 aa14.75□□□□□ -0.05
VPS39-210ENST00000568357 AP1M1Q9BXS5 423 aa14.75□□□□□ -0.05
VPS39-210ENST00000568357 LDHAL6BQ9BYZ2 381 aaPredicted RBP14.75□□□□□ -0.05
VPS39-210ENST00000568357 STN1Q9H668 368 aaKnown RBP14.75□□□□□ -0.05
VPS39-210ENST00000568357 SLC40A1Q9NP59 571 aa14.75□□□□□ -0.05
VPS39-210ENST00000568357 THSD1Q9NS62 852 aa14.75□□□□□ -0.05
VPS39-210ENST00000568357 SMARCAL1Q9NZC9 954 aa14.75□□□□□ -0.05
VPS39-210ENST00000568357 PDP2Q9P2J9 529 aa14.75□□□□□ -0.05
VPS39-210ENST00000568357 SLC2A6Q9UGQ3 507 aa14.75□□□□□ -0.05
VPS39-210ENST00000568357 TTC7AQ9ULT0 858 aaPredicted RBP14.75□□□□□ -0.05
VPS39-210ENST00000568357 PSMD13Q9UNM6 376 aa14.75□□□□□ -0.05
VPS39-210ENST00000568357 HECTD1Q9ULT8 2610 aa14.75□□□□□ -0.05
VPS39-210ENST00000568357 PTPRQQ9UMZ3 2332 aa14.74□□□□□ -0.05
VPS39-210ENST00000568357 IGLV3-16A0A075B6K0 115 aa14.74□□□□□ -0.05
VPS39-210ENST00000568357 CCDC162PA2VCL2 907 aa14.74□□□□□ -0.05
VPS39-210ENST00000568357 MGAT4DA6NG13 374 aa14.74□□□□□ -0.05
VPS39-210ENST00000568357 OR51F1A6NGY5 319 aa14.74□□□□□ -0.05
VPS39-210ENST00000568357 RRP8O43159 456 aaKnown RBP14.74□□□□□ -0.05
VPS39-210ENST00000568357 ITGA2BP08514 1039 aa14.74□□□□□ -0.05
VPS39-210ENST00000568357 THRAP10827 490 aa14.74□□□□□ -0.05
VPS39-210ENST00000568357 CCL4P13236 92 aa14.74□□□□□ -0.05
VPS39-210ENST00000568357 ATP1B2P14415 290 aaPredicted RBP14.74□□□□□ -0.05
VPS39-210ENST00000568357 ADRA1DP25100 572 aa14.74□□□□□ -0.05
VPS39-210ENST00000568357 ACRV1P26436 265 aa14.74□□□□□ -0.05
VPS39-210ENST00000568357 ETV5P41161 510 aa14.74□□□□□ -0.05
VPS39-210ENST00000568357 MAPK9P45984 424 aa14.74□□□□□ -0.05
VPS39-210ENST00000568357 EPHA4P54764 986 aa14.74□□□□□ -0.05
VPS39-210ENST00000568357 CACNG1Q06432 222 aa14.74□□□□□ -0.05
VPS39-210ENST00000568357 TRIP13Q15645 432 aaPredicted RBP14.74□□□□□ -0.05
VPS39-210ENST00000568357 RPE65Q16518 533 aa14.74□□□□□ -0.05
VPS39-210ENST00000568357 BCL7AQ4VC05 210 aa14.74□□□□□ -0.05
VPS39-210ENST00000568357 TTC27Q6P3X3 843 aa14.74□□□□□ -0.05
VPS39-210ENST00000568357 WDR74Q6RFH5 385 aaPredicted RBP14.74□□□□□ -0.05
VPS39-210ENST00000568357 TMEM26Q6ZUK4 368 aa14.74□□□□□ -0.05
VPS39-210ENST00000568357 CLEC14AQ86T13 490 aa14.74□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms