RNA–Protein interactions for RNA: ENST00000563842.5

CLK3-213, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 860 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-213ENST00000563842 GLIS1Q8NBF1 620 aa13.16□□□□□ -0.3
CLK3-213ENST00000563842 PPHLN1Q8NEY8 458 aaKnown RBP13.16□□□□□ -0.3
CLK3-213ENST00000563842 OR4D9Q8NGE8 314 aa13.16□□□□□ -0.3
CLK3-213ENST00000563842 SNIP1Q8TAD8 396 aaKnown RBP13.16□□□□□ -0.3
CLK3-213ENST00000563842 ACTRT1Q8TDG2 376 aa13.16□□□□□ -0.3
CLK3-213ENST00000563842 GRK7Q8WTQ7 553 aa13.16□□□□□ -0.3
CLK3-213ENST00000563842 CXorf40BQ96DE9 158 aa13.16□□□□□ -0.3
CLK3-213ENST00000563842 LINC00615Q96LM1 132 aaPredicted RBP13.16□□□□□ -0.3
CLK3-213ENST00000563842 SLC46A1Q96NT5 459 aa13.16□□□□□ -0.3
CLK3-213ENST00000563842 FOXP3Q9BZS1 431 aa13.16□□□□□ -0.3
CLK3-213ENST00000563842 PIH1D1Q9NWS0 290 aaKnown RBP13.16□□□□□ -0.3
CLK3-213ENST00000563842 BFARQ9NZS9 450 aa13.16□□□□□ -0.3
CLK3-213ENST00000563842 ACSL5Q9ULC5 683 aa13.16□□□□□ -0.3
CLK3-213ENST00000563842 RAXQ9Y2V3 346 aa13.16□□□□□ -0.3
CLK3-213ENST00000563842 ZFYVE26Q68DK2 2539 aa13.16□□□□□ -0.3
CLK3-213ENST00000563842 TRBV5-4A0A0C4DH59 114 aa13.15□□□□□ -0.3
CLK3-213ENST00000563842 HGSO14964 777 aaPredicted RBP13.15□□□□□ -0.3
CLK3-213ENST00000563842 ITGA2BP08514 1039 aa13.15□□□□□ -0.3
CLK3-213ENST00000563842 GSTM1P09488 218 aa13.15□□□□□ -0.3
CLK3-213ENST00000563842 TCP1P17987 556 aaKnown RBP13.15□□□□□ -0.3
CLK3-213ENST00000563842 TPSB2P20231 275 aa13.15□□□□□ -0.3
CLK3-213ENST00000563842 ACRV1P26436 265 aa13.15□□□□□ -0.3
CLK3-213ENST00000563842 RPL10P27635 214 aaKnown RBP13.15□□□□□ -0.3
CLK3-213ENST00000563842 LIMK2P53671 638 aa13.15□□□□□ -0.3
CLK3-213ENST00000563842 PCBP4P57723 403 aaKnown RBP13.15□□□□□ -0.3
CLK3-213ENST00000563842 UBE2IP63279 158 aaKnown RBP13.15□□□□□ -0.3
CLK3-213ENST00000563842 GSTM4Q03013 218 aa13.15□□□□□ -0.3
CLK3-213ENST00000563842 TPSAB1Q15661 275 aa13.15□□□□□ -0.3
CLK3-213ENST00000563842 SEPT7Q16181 437 aaKnown RBP13.15□□□□□ -0.3
CLK3-213ENST00000563842 PCID2Q5JVF3 399 aa13.15□□□□□ -0.3
CLK3-213ENST00000563842 TSTD2Q5T7W7 516 aa13.15□□□□□ -0.3
CLK3-213ENST00000563842 METRNLQ641Q3 311 aa13.15□□□□□ -0.3
CLK3-213ENST00000563842 TMEM71Q6P5X7 295 aa13.15□□□□□ -0.3
CLK3-213ENST00000563842 FOXR1Q6PIV2 292 aa13.15□□□□□ -0.3
CLK3-213ENST00000563842 WDR74Q6RFH5 385 aaPredicted RBP13.15□□□□□ -0.3
CLK3-213ENST00000563842 DET1Q7L5Y6 550 aa13.15□□□□□ -0.3
CLK3-213ENST00000563842 PRUNE1Q86TP1 453 aa13.15□□□□□ -0.3
CLK3-213ENST00000563842 SERPINA9Q86WD7 417 aa13.15□□□□□ -0.3
CLK3-213ENST00000563842 SLITRK4Q8IW52 837 aa13.15□□□□□ -0.3
CLK3-213ENST00000563842 ZNF248Q8NDW4 579 aa13.15□□□□□ -0.3
CLK3-213ENST00000563842 OR2L2Q8NH16 312 aa13.15□□□□□ -0.3
CLK3-213ENST00000563842 SGF29Q96ES7 293 aa13.15□□□□□ -0.3
CLK3-213ENST00000563842 CCDC97Q96F63 343 aaPredicted RBP13.15□□□□□ -0.3
CLK3-213ENST00000563842 MS4A14Q96JA4 679 aa13.15□□□□□ -0.3
CLK3-213ENST00000563842 NUDT22Q9BRQ3 303 aa13.15□□□□□ -0.3
CLK3-213ENST00000563842 IL22Q9GZX6 179 aa13.15□□□□□ -0.3
CLK3-213ENST00000563842 FAM96AQ9H5X1 160 aa13.15□□□□□ -0.3
CLK3-213ENST00000563842 RDH14Q9HBH5 336 aa13.15□□□□□ -0.3
CLK3-213ENST00000563842 SNX12Q9UMY4 172 aa13.15□□□□□ -0.3
CLK3-213ENST00000563842 ASPMQ8IZT6 3477 aa13.15□□□□□ -0.3
CLK3-213ENST00000563842 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP13.14□□□□□ -0.31
CLK3-213ENST00000563842 IGLV3-16A0A075B6K0 115 aa13.14□□□□□ -0.31
CLK3-213ENST00000563842 A0A087WV48 116 aa13.14□□□□□ -0.31
CLK3-213ENST00000563842 C17orf113A0A1B0GUU1 675 aa13.14□□□□□ -0.31
CLK3-213ENST00000563842 CCL22O00626 93 aa13.14□□□□□ -0.31
CLK3-213ENST00000563842 CASC3O15234 703 aaKnown RBP13.14□□□□□ -0.31
CLK3-213ENST00000563842 TNFSF15O95150 251 aa13.14□□□□□ -0.31
CLK3-213ENST00000563842 KRT14P02533 472 aa13.14□□□□□ -0.31
CLK3-213ENST00000563842 PBLDP30039 288 aaPredicted RBP13.14□□□□□ -0.31
CLK3-213ENST00000563842 CA5AP35218 305 aa13.14□□□□□ -0.31
CLK3-213ENST00000563842 COILP38432 576 aaPredicted RBP13.14□□□□□ -0.31
CLK3-213ENST00000563842 EIF2S3P41091 472 aaKnown RBP13.14□□□□□ -0.31
CLK3-213ENST00000563842 SLC19A1P41440 591 aa13.14□□□□□ -0.31
CLK3-213ENST00000563842 PRLHRP49683 370 aa13.14□□□□□ -0.31
CLK3-213ENST00000563842 DRG2P55039 364 aaKnown RBP13.14□□□□□ -0.31
CLK3-213ENST00000563842 PRAMEP78395 509 aa13.14□□□□□ -0.31
CLK3-213ENST00000563842 ITIH4Q14624 930 aa13.14□□□□□ -0.31
CLK3-213ENST00000563842 GSE1Q14687 1217 aa13.14□□□□□ -0.31
CLK3-213ENST00000563842 CYP1B1Q16678 543 aa13.14□□□□□ -0.31
CLK3-213ENST00000563842 CCDC38Q502W7 563 aa13.14□□□□□ -0.31
CLK3-213ENST00000563842 NKAIN2Q5VXU1 208 aa13.14□□□□□ -0.31
CLK3-213ENST00000563842 ARMC3Q5W041 872 aa13.14□□□□□ -0.31
CLK3-213ENST00000563842 CCDC137Q6PK04 289 aaKnown RBP13.14□□□□□ -0.31
CLK3-213ENST00000563842 AFTPHQ6ULP2 937 aa13.14□□□□□ -0.31
CLK3-213ENST00000563842 CERS6Q6ZMG9 384 aa13.14□□□□□ -0.31
CLK3-213ENST00000563842 TMEM26Q6ZUK4 368 aa13.14□□□□□ -0.31
CLK3-213ENST00000563842 PLXDC1Q8IUK5 500 aa13.14□□□□□ -0.31
CLK3-213ENST00000563842 HM13Q8TCT9 377 aa13.14□□□□□ -0.31
CLK3-213ENST00000563842 NCSTNQ92542 709 aa13.14□□□□□ -0.31
CLK3-213ENST00000563842 CCM2Q9BSQ5 444 aa13.14□□□□□ -0.31
CLK3-213ENST00000563842 AP1M1Q9BXS5 423 aa13.14□□□□□ -0.31
CLK3-213ENST00000563842 SEMA6CQ9H3T2 930 aa13.14□□□□□ -0.31
CLK3-213ENST00000563842 ASCL3Q9NQ33 180 aa13.14□□□□□ -0.31
CLK3-213ENST00000563842 SCHIP1Q9P0W5 487 aaPredicted RBP13.14□□□□□ -0.31
CLK3-213ENST00000563842 ZNF624Q9P2J8 865 aaPredicted RBP13.14□□□□□ -0.31
CLK3-213ENST00000563842 ANAPC5Q9UJX4 755 aa13.14□□□□□ -0.31
CLK3-213ENST00000563842 TCAF1Q9Y4C2 921 aa13.14□□□□□ -0.31
CLK3-213ENST00000563842 LOXL2Q9Y4K0 774 aa13.14□□□□□ -0.31
CLK3-213ENST00000563842 MAST4O15021 2626 aa13.14□□□□□ -0.31
CLK3-213ENST00000563842 AHCTF1Q8WYP5 2266 aa13.14□□□□□ -0.31
CLK3-213ENST00000563842 FREM2Q5SZK8 3169 aa13.13□□□□□ -0.31
CLK3-213ENST00000563842 IGHV5-10-1A0A0J9YXX1 117 aa13.13□□□□□ -0.31
CLK3-213ENST00000563842 TLX3O43711 291 aaPredicted RBP13.13□□□□□ -0.31
CLK3-213ENST00000563842 PHF2O75151 1096 aa13.13□□□□□ -0.31
CLK3-213ENST00000563842 AP2A2O94973 939 aa13.13□□□□□ -0.31
CLK3-213ENST00000563842 BRAFP15056 766 aa13.13□□□□□ -0.31
CLK3-213ENST00000563842 AMD1P17707 334 aa13.13□□□□□ -0.31
CLK3-213ENST00000563842 CSTF2P33240 577 aaKnown RBP eCLIP13.13□□□□□ -0.31
CLK3-213ENST00000563842 GRIA1P42261 906 aa13.13□□□□□ -0.31
CLK3-213ENST00000563842 NSG1P42857 185 aa13.13□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms