RNA–Protein interactions for RNA: ENST00000562754.1

VPS4A-202, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 2

Gene VPS4A, Length 633 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-202ENST00000562754 KCNJ9Q92806 393 aa16.33■□□□□ 0.2
VPS4A-202ENST00000562754 LOXL4Q96JB6 756 aa16.33■□□□□ 0.2
VPS4A-202ENST00000562754 ZNF514Q96K75 400 aaPredicted RBP16.33■□□□□ 0.2
VPS4A-202ENST00000562754 OR2M4Q96R27 311 aa16.33■□□□□ 0.2
VPS4A-202ENST00000562754 GPR21Q99679 349 aa16.33■□□□□ 0.2
VPS4A-202ENST00000562754 SLC30A3Q99726 388 aa16.33■□□□□ 0.2
VPS4A-202ENST00000562754 TCEAL2Q9H3H9 227 aaPredicted RBP16.33■□□□□ 0.2
VPS4A-202ENST00000562754 RMI1Q9H9A7 625 aa16.33■□□□□ 0.2
VPS4A-202ENST00000562754 CARS2Q9HA77 564 aaKnown RBP16.33■□□□□ 0.2
VPS4A-202ENST00000562754 GULP1Q9UBP9 304 aa16.33■□□□□ 0.2
VPS4A-202ENST00000562754 KLF15Q9UIH9 416 aa16.33■□□□□ 0.2
VPS4A-202ENST00000562754 GPR34Q9UPC5 381 aa16.33■□□□□ 0.2
VPS4A-202ENST00000562754 QSOX1O00391 747 aa16.32■□□□□ 0.2
VPS4A-202ENST00000562754 MAGEC1O60732 1142 aa16.32■□□□□ 0.2
VPS4A-202ENST00000562754 KRT37O76014 449 aa16.32■□□□□ 0.2
VPS4A-202ENST00000562754 TRIM16O95361 564 aa16.32■□□□□ 0.2
VPS4A-202ENST00000562754 FTH1P02794 183 aa16.32■□□□□ 0.2
VPS4A-202ENST00000562754 ALDOAP04075 364 aaKnown RBP16.32■□□□□ 0.2
VPS4A-202ENST00000562754 SNRPAP09012 282 aaKnown RBP16.32■□□□□ 0.2
VPS4A-202ENST00000562754 SAT1P21673 171 aa16.32■□□□□ 0.2
VPS4A-202ENST00000562754 CNTFP26441 200 aa16.32■□□□□ 0.2
VPS4A-202ENST00000562754 CTSKP43235 329 aa16.32■□□□□ 0.2
VPS4A-202ENST00000562754 CSRP3P50461 194 aa16.32■□□□□ 0.2
VPS4A-202ENST00000562754 CLCN7P51798 805 aa16.32■□□□□ 0.2
VPS4A-202ENST00000562754 C21orf59P57076 290 aa16.32■□□□□ 0.2
VPS4A-202ENST00000562754 POU4F1Q01851 419 aa16.32■□□□□ 0.2
VPS4A-202ENST00000562754 ILF2Q12905 390 aaKnown RBP16.32■□□□□ 0.2
VPS4A-202ENST00000562754 ZNF460Q14592 562 aa16.32■□□□□ 0.2
VPS4A-202ENST00000562754 USP10Q14694 798 aaKnown RBP16.32■□□□□ 0.2
VPS4A-202ENST00000562754 ZKSCAN8Q15776 578 aaPredicted RBP16.32■□□□□ 0.2
VPS4A-202ENST00000562754 KIF19Q2TAC6 998 aa16.32■□□□□ 0.2
VPS4A-202ENST00000562754 ZNF542PQ5EBM4 170 aa16.32■□□□□ 0.2
VPS4A-202ENST00000562754 NAPRTQ6XQN6 538 aa16.32■□□□□ 0.2
VPS4A-202ENST00000562754 GALNT13Q8IUC8 556 aa16.32■□□□□ 0.2
VPS4A-202ENST00000562754 HID1Q8IV36 788 aa16.32■□□□□ 0.2
VPS4A-202ENST00000562754 CD200R1Q8TD46 325 aa16.32■□□□□ 0.2
VPS4A-202ENST00000562754 ISL2Q96A47 359 aa16.32■□□□□ 0.2
VPS4A-202ENST00000562754 LINC00615Q96LM1 132 aaPredicted RBP16.32■□□□□ 0.2
VPS4A-202ENST00000562754 SLC23A2Q9UGH3 650 aa16.32■□□□□ 0.2
VPS4A-202ENST00000562754 ZNHIT2Q9UHR6 403 aa16.32■□□□□ 0.2
VPS4A-202ENST00000562754 ANKRD6Q9Y2G4 727 aa16.32■□□□□ 0.2
VPS4A-202ENST00000562754 VWA7Q9Y334 891 aa16.32■□□□□ 0.2
VPS4A-202ENST00000562754 PLEKHM1Q9Y4G2 1056 aa16.32■□□□□ 0.2
VPS4A-202ENST00000562754 DGKBQ9Y6T7 804 aa16.32■□□□□ 0.2
VPS4A-202ENST00000562754 TDRD6O60522 2096 aaKnown RBP16.31■□□□□ 0.2
VPS4A-202ENST00000562754 ADAMTS9Q9P2N4 1935 aa16.31■□□□□ 0.2
VPS4A-202ENST00000562754 IQANK1A0A1B0GTG1 560 aa16.31■□□□□ 0.2
VPS4A-202ENST00000562754 PATE3B3GLJ2 98 aa16.31■□□□□ 0.2
VPS4A-202ENST00000562754 TPP1O14773 563 aa16.31■□□□□ 0.2
VPS4A-202ENST00000562754 KMOO15229 486 aa16.31■□□□□ 0.2
VPS4A-202ENST00000562754 PHGDHO43175 533 aaKnown RBP16.31■□□□□ 0.2
VPS4A-202ENST00000562754 VPS26AO75436 327 aa16.31■□□□□ 0.2
VPS4A-202ENST00000562754 POP7O75817 140 aaKnown RBP16.31■□□□□ 0.2
VPS4A-202ENST00000562754 RASGRP1O95267 797 aa16.31■□□□□ 0.2
VPS4A-202ENST00000562754 WISP3O95389 354 aaPredicted RBP16.31■□□□□ 0.2
VPS4A-202ENST00000562754 ACP5P13686 325 aa16.31■□□□□ 0.2
VPS4A-202ENST00000562754 CD9P21926 228 aa16.31■□□□□ 0.2
VPS4A-202ENST00000562754 CCR7P32248 378 aa16.31■□□□□ 0.2
VPS4A-202ENST00000562754 GMPRP36959 345 aa16.31■□□□□ 0.2
VPS4A-202ENST00000562754 DPP6P42658 865 aa16.31■□□□□ 0.2
VPS4A-202ENST00000562754 MAGEA12P43365 314 aa16.31■□□□□ 0.2
VPS4A-202ENST00000562754 SERPINB8P50452 374 aa16.31■□□□□ 0.2
VPS4A-202ENST00000562754 PPARDQ03181 441 aa16.31■□□□□ 0.2
VPS4A-202ENST00000562754 DUOXA1Q1HG43 343 aa16.31■□□□□ 0.2
VPS4A-202ENST00000562754 RD3Q7Z3Z2 195 aa16.31■□□□□ 0.2
VPS4A-202ENST00000562754 PHACTR4Q8IZ21 702 aa16.31■□□□□ 0.2
VPS4A-202ENST00000562754 LILRA3Q8N6C8 439 aaPredicted RBP16.31■□□□□ 0.2
VPS4A-202ENST00000562754 SIDT2Q8NBJ9 832 aaKnown RBP16.31■□□□□ 0.2
VPS4A-202ENST00000562754 SUMF1Q8NBK3 374 aa16.31■□□□□ 0.2
VPS4A-202ENST00000562754 PANX3Q96QZ0 392 aa16.31■□□□□ 0.2
VPS4A-202ENST00000562754 RUFY1Q96T51 708 aa16.31■□□□□ 0.2
VPS4A-202ENST00000562754 TIMM29Q9BSF4 260 aa16.31■□□□□ 0.2
VPS4A-202ENST00000562754 CCM2Q9BSQ5 444 aa16.31■□□□□ 0.2
VPS4A-202ENST00000562754 CAPN10Q9HC96 672 aa16.31■□□□□ 0.2
VPS4A-202ENST00000562754 SARS2Q9NP81 518 aaKnown RBP16.31■□□□□ 0.2
VPS4A-202ENST00000562754 FSCN3Q9NQT6 498 aa16.31■□□□□ 0.2
VPS4A-202ENST00000562754 SNX15Q9NRS6 342 aa16.31■□□□□ 0.2
VPS4A-202ENST00000562754 FAM8A1Q9UBU6 413 aa16.31■□□□□ 0.2
VPS4A-202ENST00000562754 RAB23Q9ULC3 237 aa16.31■□□□□ 0.2
VPS4A-202ENST00000562754 SNX11Q9Y5W9 270 aa16.31■□□□□ 0.2
VPS4A-202ENST00000562754 ST14Q9Y5Y6 855 aa16.31■□□□□ 0.2
VPS4A-202ENST00000562754 PRR19A6NJB7 356 aa16.3■□□□□ 0.2
VPS4A-202ENST00000562754 E5RI56 91 aa16.3■□□□□ 0.2
VPS4A-202ENST00000562754 F8W8V4 182 aa16.3■□□□□ 0.2
VPS4A-202ENST00000562754 CFIP05156 583 aa16.3■□□□□ 0.2
VPS4A-202ENST00000562754 NME1P15531 152 aaKnown RBP16.3■□□□□ 0.2
VPS4A-202ENST00000562754 CHRM3P20309 590 aa16.3■□□□□ 0.2
VPS4A-202ENST00000562754 AOAHP28039 575 aa16.3■□□□□ 0.2
VPS4A-202ENST00000562754 MPLP40238 635 aa16.3■□□□□ 0.2
VPS4A-202ENST00000562754 HK3P52790 923 aa16.3■□□□□ 0.2
VPS4A-202ENST00000562754 ARHGAP8P85298 464 aa16.3■□□□□ 0.2
VPS4A-202ENST00000562754 TCEA2Q15560 299 aa16.3■□□□□ 0.2
VPS4A-202ENST00000562754 LGSNQ5TDP6 509 aa16.3■□□□□ 0.2
VPS4A-202ENST00000562754 LAIR1Q6GTX8 287 aa16.3■□□□□ 0.2
VPS4A-202ENST00000562754 TMEM207Q6UWW9 146 aa16.3■□□□□ 0.2
VPS4A-202ENST00000562754 TIFABQ6ZNK6 161 aa16.3■□□□□ 0.2
VPS4A-202ENST00000562754 FAM83HQ6ZRV2 1179 aaPredicted RBP16.3■□□□□ 0.2
VPS4A-202ENST00000562754 CHST15Q7LFX5 561 aaPredicted RBP16.3■□□□□ 0.2
VPS4A-202ENST00000562754 OR2L2Q8NH16 312 aa16.3■□□□□ 0.2
VPS4A-202ENST00000562754 HM13Q8TCT9 377 aa16.3■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms