RNA–Protein interactions for RNA: ENST00000560628.1

LDLR-214, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 535 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-214ENST00000560628 SPARCL1Q14515 664 aa10.03□□□□□ -0.8
LDLR-214ENST00000560628 RPE65Q16518 533 aa10.03□□□□□ -0.8
LDLR-214ENST00000560628 ANKRD20A2Q5SQ80 823 aa10.03□□□□□ -0.8
LDLR-214ENST00000560628 LDLRAP1Q5SW96 308 aa10.03□□□□□ -0.8
LDLR-214ENST00000560628 FNBP1LQ5T0N5 605 aa10.03□□□□□ -0.8
LDLR-214ENST00000560628 ANKRD20A1Q5TYW2 823 aa10.03□□□□□ -0.8
LDLR-214ENST00000560628 CACHD1Q5VU97 1274 aa10.03□□□□□ -0.8
LDLR-214ENST00000560628 ANKRD20A3Q5VUR7 823 aa10.03□□□□□ -0.8
LDLR-214ENST00000560628 IRGCQ6NXR0 463 aa10.03□□□□□ -0.8
LDLR-214ENST00000560628 XKR5Q6UX68 686 aa10.03□□□□□ -0.8
LDLR-214ENST00000560628 RANBP10Q6VN20 620 aa10.03□□□□□ -0.8
LDLR-214ENST00000560628 RAD9BQ6WBX8 426 aa10.03□□□□□ -0.8
LDLR-214ENST00000560628 FAM92BQ6ZTR7 304 aa10.03□□□□□ -0.8
LDLR-214ENST00000560628 PRICKLE2Q7Z3G6 844 aa10.03□□□□□ -0.8
LDLR-214ENST00000560628 TMTC1Q8IUR5 882 aa10.03□□□□□ -0.8
LDLR-214ENST00000560628 BEND7Q8N7W2 519 aaPredicted RBP10.03□□□□□ -0.8
LDLR-214ENST00000560628 ACRBPQ8NEB7 543 aa10.03□□□□□ -0.8
LDLR-214ENST00000560628 OR4K2Q8NGD2 314 aa10.03□□□□□ -0.8
LDLR-214ENST00000560628 CCDC110Q8TBZ0 833 aa10.03□□□□□ -0.8
LDLR-214ENST00000560628 RSC1A1Q92681 617 aa10.03□□□□□ -0.8
LDLR-214ENST00000560628 ZPBPQ9BS86 351 aa10.03□□□□□ -0.8
LDLR-214ENST00000560628 FAM117AQ9C073 453 aa10.03□□□□□ -0.8
LDLR-214ENST00000560628 LACRTQ9GZZ8 138 aa10.03□□□□□ -0.8
LDLR-214ENST00000560628 FAM96AQ9H5X1 160 aa10.03□□□□□ -0.8
LDLR-214ENST00000560628 GPN2Q9H9Y4 310 aaPredicted RBP10.03□□□□□ -0.8
LDLR-214ENST00000560628 POT1Q9NUX5 634 aa10.03□□□□□ -0.8
LDLR-214ENST00000560628 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP10.03□□□□□ -0.81e-6■■□□□ 13.1
LDLR-214ENST00000560628 FAM8A1Q9UBU6 413 aa10.03□□□□□ -0.8
LDLR-214ENST00000560628 IL17BQ9UHF5 180 aa10.03□□□□□ -0.8
LDLR-214ENST00000560628 CFAP20Q9Y6A4 193 aaKnown RBP10.03□□□□□ -0.8
LDLR-214ENST00000560628 MN1Q10571 1320 aaPredicted RBP10.03□□□□□ -0.8
LDLR-214ENST00000560628 COL6A6A6NMZ7 2263 aa10.03□□□□□ -0.8
LDLR-214ENST00000560628 ATMQ13315 3056 aa10.03□□□□□ -0.8
LDLR-214ENST00000560628 C2orf81A6NN90 581 aa10.02□□□□□ -0.81
LDLR-214ENST00000560628 PJA2O43164 708 aa10.02□□□□□ -0.81
LDLR-214ENST00000560628 KCNJ13O60928 360 aa10.02□□□□□ -0.81
LDLR-214ENST00000560628 IPO7O95373 1038 aaKnown RBP10.02□□□□□ -0.81
LDLR-214ENST00000560628 ANKRD34CP0C6C1 535 aa10.02□□□□□ -0.81
LDLR-214ENST00000560628 PYGMP11217 842 aa10.02□□□□□ -0.81
LDLR-214ENST00000560628 ZNF28P17035 718 aa10.02□□□□□ -0.81
LDLR-214ENST00000560628 MSH3P20585 1137 aa10.02□□□□□ -0.81
LDLR-214ENST00000560628 ADRA1AP35348 466 aa10.02□□□□□ -0.81
LDLR-214ENST00000560628 RWDD2BP57060 319 aa10.02□□□□□ -0.81
LDLR-214ENST00000560628 PPP1CAP62136 330 aa10.02□□□□□ -0.81
LDLR-214ENST00000560628 TMPRSS15P98073 1019 aa10.02□□□□□ -0.81
LDLR-214ENST00000560628 ITGA9Q13797 1035 aa10.02□□□□□ -0.81
LDLR-214ENST00000560628 PRPSAP1Q14558 356 aa10.02□□□□□ -0.81
LDLR-214ENST00000560628 TAF1AQ15573 450 aaPredicted RBP10.02□□□□□ -0.81
LDLR-214ENST00000560628 ITPRIPL1Q6GPH6 555 aa10.02□□□□□ -0.81
LDLR-214ENST00000560628 MICALCLQ6ZW33 695 aa10.02□□□□□ -0.81
LDLR-214ENST00000560628 CDKL3Q8IVW4 592 aaPredicted RBP10.02□□□□□ -0.81
LDLR-214ENST00000560628 DDHD1Q8NEL9 900 aa10.02□□□□□ -0.81
LDLR-214ENST00000560628 GPR150Q8NGU9 434 aa10.02□□□□□ -0.81
LDLR-214ENST00000560628 DTX3LQ8TDB6 740 aa10.02□□□□□ -0.81
LDLR-214ENST00000560628 ALG3Q92685 438 aa10.02□□□□□ -0.81
LDLR-214ENST00000560628 KIAA1143Q96AT1 154 aaPredicted RBP10.02□□□□□ -0.81
LDLR-214ENST00000560628 ZDHHC12Q96GR4 267 aa10.02□□□□□ -0.81
LDLR-214ENST00000560628 OR6C1Q96RD1 312 aa10.02□□□□□ -0.81
LDLR-214ENST00000560628 FERMT1Q9BQL6 677 aa10.02□□□□□ -0.81
LDLR-214ENST00000560628 ULBP3Q9BZM4 244 aa10.02□□□□□ -0.81
LDLR-214ENST00000560628 ZCCHC2Q9C0B9 1178 aaKnown RBP10.02□□□□□ -0.81
LDLR-214ENST00000560628 ASB8Q9H765 288 aa10.02□□□□□ -0.81
LDLR-214ENST00000560628 SIDT1Q9NXL6 827 aaKnown RBP10.02□□□□□ -0.81
LDLR-214ENST00000560628 FKBPLQ9UIM3 349 aa10.02□□□□□ -0.81
LDLR-214ENST00000560628 EFR3BQ9Y2G0 817 aa10.02□□□□□ -0.81
LDLR-214ENST00000560628 TMEM184BQ9Y519 407 aaPredicted RBP10.02□□□□□ -0.81
LDLR-214ENST00000560628 HEMK1Q9Y5R4 338 aaPredicted RBP10.02□□□□□ -0.81
LDLR-214ENST00000560628 ZNF462Q96JM2 2506 aa10.01□□□□□ -0.81
LDLR-214ENST00000560628 CCDC66A2RUB6 948 aa10.01□□□□□ -0.81
LDLR-214ENST00000560628 GRID2IPA4D2P6 1211 aa10.01□□□□□ -0.81
LDLR-214ENST00000560628 C5orf60A6NFR6 353 aa10.01□□□□□ -0.81
LDLR-214ENST00000560628 ZNF891A8MT65 544 aaPredicted RBP10.01□□□□□ -0.81
LDLR-214ENST00000560628 CCL22O00626 93 aa10.01□□□□□ -0.81
LDLR-214ENST00000560628 PPFIA2O75334 1257 aa10.01□□□□□ -0.81
LDLR-214ENST00000560628 SRP72O76094 671 aaKnown RBP10.01□□□□□ -0.81
LDLR-214ENST00000560628 STK10O94804 968 aaKnown RBP10.01□□□□□ -0.81
LDLR-214ENST00000560628 TJP3O95049 919 aa10.01□□□□□ -0.81
LDLR-214ENST00000560628 PRAMEF1O95521 474 aa10.01□□□□□ -0.81
LDLR-214ENST00000560628 POLBP06746 335 aa10.01□□□□□ -0.81
LDLR-214ENST00000560628 SFTPCP11686 197 aa10.01□□□□□ -0.81
LDLR-214ENST00000560628 FECHP22830 423 aa10.01□□□□□ -0.81
LDLR-214ENST00000560628 CETN2P41208 172 aa10.01□□□□□ -0.81
LDLR-214ENST00000560628 DMPKQ09013 629 aa10.01□□□□□ -0.81
LDLR-214ENST00000560628 ABHD18Q0P651 414 aa10.01□□□□□ -0.81
LDLR-214ENST00000560628 LONRF2Q1L5Z9 754 aa10.01□□□□□ -0.81
LDLR-214ENST00000560628 METRNLQ641Q3 311 aa10.01□□□□□ -0.81
LDLR-214ENST00000560628 DENND5AQ6IQ26 1287 aa10.01□□□□□ -0.81
LDLR-214ENST00000560628 C16orf46Q6P387 395 aa10.01□□□□□ -0.81
LDLR-214ENST00000560628 BORAQ6PGQ7 559 aa10.01□□□□□ -0.81
LDLR-214ENST00000560628 KIAA1328Q86T90 577 aa10.01□□□□□ -0.81
LDLR-214ENST00000560628 RASGRP3Q8IV61 690 aa10.01□□□□□ -0.81
LDLR-214ENST00000560628 RBM12BQ8IXT5 1001 aaKnown RBP10.01□□□□□ -0.81
LDLR-214ENST00000560628 GALNT6Q8NCL4 622 aa10.01□□□□□ -0.81
LDLR-214ENST00000560628 SPDYE1Q8NFV5 336 aaPredicted RBP10.01□□□□□ -0.81
LDLR-214ENST00000560628 OR13C4Q8NGS5 318 aa10.01□□□□□ -0.81
LDLR-214ENST00000560628 MRFAP1L1Q96HT8 127 aa10.01□□□□□ -0.81
LDLR-214ENST00000560628 SLC45A3Q96JT2 553 aa10.01□□□□□ -0.81
LDLR-214ENST00000560628 SPATA13Q96N96 652 aa10.01□□□□□ -0.81
LDLR-214ENST00000560628 INSM2Q96T92 566 aaPredicted RBP10.01□□□□□ -0.81
LDLR-214ENST00000560628 TRIM4Q9C037 500 aa10.01□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms