RNA–Protein interactions for RNA: ENST00000559989.1

CSPG4P12-202, Transcript of chondroitin sulfate proteoglycan 4 pseudogene 12, humanhuman

TSL 1 (best) BASIC

Gene CSPG4P12, Length 7,790 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4P12-202ENST00000559989 CPSF7Q8N684 471 aaKnown RBP13.72□□□□□ -0.21
CSPG4P12-202ENST00000559989 C12orf50Q8NA57 414 aaPredicted RBP13.72□□□□□ -0.21
CSPG4P12-202ENST00000559989 HIPK3Q9H422 1215 aa13.72□□□□□ -0.21
CSPG4P12-202ENST00000559989 SMPD4Q9NXE4 827 aa13.72□□□□□ -0.21
CSPG4P12-202ENST00000559989 MAP4K5Q9Y4K4 846 aa13.72□□□□□ -0.21
CSPG4P12-202ENST00000559989 PIGBOS1A0A0B4J2F0 54 aa13.72□□□□□ -0.21
CSPG4P12-202ENST00000559989 DAPL1A0PJW8 107 aa13.72□□□□□ -0.21
CSPG4P12-202ENST00000559989 LPOP22079 712 aaPredicted RBP13.72□□□□□ -0.21
CSPG4P12-202ENST00000559989 EIF4BP23588 611 aaKnown RBP13.72□□□□□ -0.21
CSPG4P12-202ENST00000559989 MAGEA11P43364 429 aa13.72□□□□□ -0.21
CSPG4P12-202ENST00000559989 USP4Q13107 963 aa13.72□□□□□ -0.21
CSPG4P12-202ENST00000559989 CPSF6Q16630 551 aaKnown RBP eCLIP13.72□□□□□ -0.21
CSPG4P12-202ENST00000559989 PGM2L1Q6PCE3 622 aa13.72□□□□□ -0.21
CSPG4P12-202ENST00000559989 AENQ8WTP8 325 aaKnown RBP13.72□□□□□ -0.21
CSPG4P12-202ENST00000559989 LRTM1Q9HBL6 345 aa13.72□□□□□ -0.21
CSPG4P12-202ENST00000559989 BPIFA1Q9NP55 256 aa13.72□□□□□ -0.21
CSPG4P12-202ENST00000559989 B3GAT2Q9NPZ5 323 aa13.72□□□□□ -0.21
CSPG4P12-202ENST00000559989 CDH13P55290 713 aa13.72□□□□□ -0.21
CSPG4P12-202ENST00000559989 KCNJ2P63252 427 aa13.72□□□□□ -0.21
CSPG4P12-202ENST00000559989 CES5AQ6NT32 575 aa13.72□□□□□ -0.21
CSPG4P12-202ENST00000559989 BORAQ6PGQ7 559 aa13.72□□□□□ -0.21
CSPG4P12-202ENST00000559989 TMEM86AQ8N2M4 240 aa13.72□□□□□ -0.21
CSPG4P12-202ENST00000559989 ZNF175Q9Y473 711 aa13.72□□□□□ -0.21
CSPG4P12-202ENST00000559989 TRIM74Q86UV6 250 aa13.72□□□□□ -0.21
CSPG4P12-202ENST00000559989 TRIM73Q86UV7 250 aa13.72□□□□□ -0.21
CSPG4P12-202ENST00000559989 CCDC28AQ8IWP9 274 aa13.72□□□□□ -0.21
CSPG4P12-202ENST00000559989 UPF1Q92900 1129 aaKnown RBP eCLIP13.72□□□□□ -0.21
CSPG4P12-202ENST00000559989 SSX3Q99909 188 aa13.72□□□□□ -0.21
CSPG4P12-202ENST00000559989 SYT4Q9H2B2 425 aa13.72□□□□□ -0.21
CSPG4P12-202ENST00000559989 GRXCR2A6NFK2 248 aa13.71□□□□□ -0.21
CSPG4P12-202ENST00000559989 SLC22A1O15245 554 aa13.71□□□□□ -0.21
CSPG4P12-202ENST00000559989 PGLSO95336 258 aa13.71□□□□□ -0.21
CSPG4P12-202ENST00000559989 RBL1P28749 1068 aa13.71□□□□□ -0.21
CSPG4P12-202ENST00000559989 ABL2P42684 1182 aa13.71□□□□□ -0.21
CSPG4P12-202ENST00000559989 C2orf80Q0P641 193 aa13.71□□□□□ -0.21
CSPG4P12-202ENST00000559989 GRM3Q14832 879 aa13.71□□□□□ -0.21
CSPG4P12-202ENST00000559989 SNAP47Q5SQN1 464 aa13.71□□□□□ -0.21
CSPG4P12-202ENST00000559989 SCIMPQ6UWF3 145 aa13.71□□□□□ -0.21
CSPG4P12-202ENST00000559989 SMARCD2Q92925 531 aa13.71□□□□□ -0.21
CSPG4P12-202ENST00000559989 NINJ1Q92982 152 aa13.71□□□□□ -0.21
CSPG4P12-202ENST00000559989 TCEAL4Q96EI5 215 aa13.71□□□□□ -0.21
CSPG4P12-202ENST00000559989 MFSD14AQ96MC6 490 aa13.71□□□□□ -0.21
CSPG4P12-202ENST00000559989 KAT8Q9H7Z6 458 aaKnown RBP13.71□□□□□ -0.21
CSPG4P12-202ENST00000559989 ELOVL2Q9NXB9 296 aa13.71□□□□□ -0.21
CSPG4P12-202ENST00000559989 HHLA1C9JL84 531 aa13.71□□□□□ -0.21
CSPG4P12-202ENST00000559989 RARAP10276 462 aa13.71□□□□□ -0.21
CSPG4P12-202ENST00000559989 TSPAN8P19075 237 aa13.71□□□□□ -0.21
CSPG4P12-202ENST00000559989 SMARCD3Q6STE5 483 aa13.71□□□□□ -0.21
CSPG4P12-202ENST00000559989 DNAAF1Q8NEP3 725 aa13.71□□□□□ -0.21
CSPG4P12-202ENST00000559989 PRMT6Q96LA8 375 aaPredicted RBP13.71□□□□□ -0.21
CSPG4P12-202ENST00000559989 GDAP2Q9NXN4 497 aa13.71□□□□□ -0.21
CSPG4P12-202ENST00000559989 NR2E1Q9Y466 385 aa13.71□□□□□ -0.21
CSPG4P12-202ENST00000559989 ADGRL3Q9HAR2 1447 aa13.71□□□□□ -0.21
CSPG4P12-202ENST00000559989 CNTNAP5Q8WYK1 1306 aa13.71□□□□□ -0.21
CSPG4P12-202ENST00000559989 ANKRD33BA6NCL7 494 aa13.71□□□□□ -0.21
CSPG4P12-202ENST00000559989 ZNF726A6NNF4 738 aa13.71□□□□□ -0.21
CSPG4P12-202ENST00000559989 ATAD3CQ5T2N8 411 aa13.71□□□□□ -0.21
CSPG4P12-202ENST00000559989 CERCAMQ5T4B2 595 aa13.71□□□□□ -0.21
CSPG4P12-202ENST00000559989 DNM1P34Q6PK57 102 aa13.71□□□□□ -0.21
CSPG4P12-202ENST00000559989 SLC37A3Q8NCC5 494 aa13.71□□□□□ -0.21
CSPG4P12-202ENST00000559989 BPIFB1Q8TDL5 484 aa13.71□□□□□ -0.21
CSPG4P12-202ENST00000559989 OVCA2Q8WZ82 227 aa13.71□□□□□ -0.21
CSPG4P12-202ENST00000559989 DPF3Q92784 378 aa13.71□□□□□ -0.21
CSPG4P12-202ENST00000559989 TMLHEQ9NVH6 421 aa13.71□□□□□ -0.21
CSPG4P12-202ENST00000559989 MARCH2Q9P0N8 246 aa13.71□□□□□ -0.21
CSPG4P12-202ENST00000559989 PCDH10Q9P2E7 1040 aa13.71□□□□□ -0.21
CSPG4P12-202ENST00000559989 TRAF6Q9Y4K3 522 aa13.71□□□□□ -0.21
CSPG4P12-202ENST00000559989 ZNF705EA8MWA4 302 aaPredicted RBP13.71□□□□□ -0.21
CSPG4P12-202ENST00000559989 AURKAO14965 403 aa13.71□□□□□ -0.21
CSPG4P12-202ENST00000559989 ENTPD3O75355 529 aa13.71□□□□□ -0.21
CSPG4P12-202ENST00000559989 GPIP06744 558 aa13.71□□□□□ -0.21
CSPG4P12-202ENST00000559989 PCSK2P16519 638 aa13.71□□□□□ -0.21
CSPG4P12-202ENST00000559989 NELFEP18615 380 aaKnown RBP13.71□□□□□ -0.21
CSPG4P12-202ENST00000559989 UGT1A3P35503 534 aa13.71□□□□□ -0.21
CSPG4P12-202ENST00000559989 OGFOD2Q6N063 350 aa13.71□□□□□ -0.21
CSPG4P12-202ENST00000559989 OR4L1Q8NH43 312 aa13.71□□□□□ -0.21
CSPG4P12-202ENST00000559989 DNAJB3Q8WWF6 145 aa13.71□□□□□ -0.21
CSPG4P12-202ENST00000559989 OR51V1Q9H2C8 321 aa13.71□□□□□ -0.21
CSPG4P12-202ENST00000559989 PCDHB16Q9NRJ7 776 aa13.71□□□□□ -0.21
CSPG4P12-202ENST00000559989 ZNF99A8MXY4 864 aaPredicted RBP13.71□□□□□ -0.22
CSPG4P12-202ENST00000559989 KELP23276 732 aa13.71□□□□□ -0.22
CSPG4P12-202ENST00000559989 KDELR1P24390 212 aa13.71□□□□□ -0.22
CSPG4P12-202ENST00000559989 PSMA6P60900 246 aaKnown RBP13.71□□□□□ -0.22
CSPG4P12-202ENST00000559989 ASTE1Q2TB18 679 aaPredicted RBP13.71□□□□□ -0.22
CSPG4P12-202ENST00000559989 PITRM1Q5JRX3 1037 aa13.71□□□□□ -0.22
CSPG4P12-202ENST00000559989 C3orf67Q6ZVT6 689 aa13.71□□□□□ -0.22
CSPG4P12-202ENST00000559989 RELL1Q8IUW5 271 aa13.71□□□□□ -0.22
CSPG4P12-202ENST00000559989 DAGLBQ8NCG7 672 aa13.71□□□□□ -0.22
CSPG4P12-202ENST00000559989 ASB15Q8WXK1 588 aa13.71□□□□□ -0.22
CSPG4P12-202ENST00000559989 ERLEC1Q96DZ1 483 aa13.71□□□□□ -0.22
CSPG4P12-202ENST00000559989 PGLYRP2Q96PD5 576 aa13.71□□□□□ -0.22
CSPG4P12-202ENST00000559989 ABCG8Q9H221 673 aa13.71□□□□□ -0.22
CSPG4P12-202ENST00000559989 MALT1Q9UDY8 824 aa13.71□□□□□ -0.22
CSPG4P12-202ENST00000559989 PRAMEF22A3QJZ6 481 aa13.71□□□□□ -0.22
CSPG4P12-202ENST00000559989 TRAFD1O14545 582 aaPredicted RBP13.71□□□□□ -0.22
CSPG4P12-202ENST00000559989 TNFRSF10BO14763 440 aa13.71□□□□□ -0.22
CSPG4P12-202ENST00000559989 IL1BP01584 269 aa13.71□□□□□ -0.22
CSPG4P12-202ENST00000559989 SCARF1Q14162 830 aa13.71□□□□□ -0.22
CSPG4P12-202ENST00000559989 XKRXQ6PP77 449 aa13.71□□□□□ -0.22
CSPG4P12-202ENST00000559989 RAVER1Q8IY67 606 aaKnown RBP13.71□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms