RNA–Protein interactions for RNA: ENST00000558925.1

USP3-209, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 3

Gene USP3, Length 501 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-209ENST00000558925 DENND2DQ9H6A0 471 aaPredicted RBP1.61□□□□□ -2.15
USP3-209ENST00000558925 SLA2Q9H6Q3 261 aa1.61□□□□□ -2.15
USP3-209ENST00000558925 MAGIXQ9H6Y5 334 aa1.61□□□□□ -2.15
USP3-209ENST00000558925 ANKZF1Q9H8Y5 726 aa1.61□□□□□ -2.15
USP3-209ENST00000558925 ZWILCHQ9H900 591 aa1.61□□□□□ -2.15
USP3-209ENST00000558925 C17orf75Q9HAS0 396 aa1.61□□□□□ -2.15
USP3-209ENST00000558925 CHMP1AQ9HD42 196 aaPredicted RBP1.61□□□□□ -2.15
USP3-209ENST00000558925 PRMT7Q9NVM4 692 aaPredicted RBP1.61□□□□□ -2.15
USP3-209ENST00000558925 ELOVL5Q9NYP7 299 aa1.61□□□□□ -2.15
USP3-209ENST00000558925 COQ3Q9NZJ6 369 aa1.61□□□□□ -2.15
USP3-209ENST00000558925 RHCGQ9UBD6 479 aa1.61□□□□□ -2.15
USP3-209ENST00000558925 TUBE1Q9UJT0 475 aa1.61□□□□□ -2.15
USP3-209ENST00000558925 OSGIN1Q9UJX0 560 aa1.61□□□□□ -2.15
USP3-209ENST00000558925 FBXL2Q9UKC9 423 aa1.61□□□□□ -2.15
USP3-209ENST00000558925 AGO1Q9UL18 857 aaKnown RBP1.61□□□□□ -2.15
USP3-209ENST00000558925 KCNS2Q9ULS6 477 aa1.61□□□□□ -2.15
USP3-209ENST00000558925 FZD10Q9ULW2 581 aa1.61□□□□□ -2.15
USP3-209ENST00000558925 TMEM184BQ9Y519 407 aaPredicted RBP1.61□□□□□ -2.15
USP3-209ENST00000558925 SNX9Q9Y5X1 595 aa1.61□□□□□ -2.15
USP3-209ENST00000558925 LIPGQ9Y5X9 500 aa1.61□□□□□ -2.15
USP3-209ENST00000558925 TRIP12Q14669 1992 aaPredicted RBP1.61□□□□□ -2.15
USP3-209ENST00000558925 ZNF804BA4D1E1 1349 aa1.61□□□□□ -2.15
USP3-209ENST00000558925 FLT1P17948 1338 aa1.61□□□□□ -2.15
USP3-209ENST00000558925 ZNF521Q96K83 1311 aa1.61□□□□□ -2.15
USP3-209ENST00000558925 SMCHD1A6NHR9 2005 aa1.61□□□□□ -2.15
USP3-209ENST00000558925 PRSS51A0A1B0GVH4 220 aa1.6□□□□□ -2.15
USP3-209ENST00000558925 ARHGEF37A1IGU5 675 aa1.6□□□□□ -2.15
USP3-209ENST00000558925 A4D1N5 150 aa1.6□□□□□ -2.15
USP3-209ENST00000558925 H0YAE9 185 aa1.6□□□□□ -2.15
USP3-209ENST00000558925 H0YIN7 160 aa1.6□□□□□ -2.15
USP3-209ENST00000558925 VWA5AO00534 786 aa1.6□□□□□ -2.15
USP3-209ENST00000558925 HS3ST1O14792 307 aa1.6□□□□□ -2.15
USP3-209ENST00000558925 TO15178 435 aa1.6□□□□□ -2.15
USP3-209ENST00000558925 NDUFS4O43181 175 aa1.6□□□□□ -2.15
USP3-209ENST00000558925 ZBTB43O43298 467 aa1.6□□□□□ -2.15
USP3-209ENST00000558925 XRCC3O43542 346 aa1.6□□□□□ -2.15
USP3-209ENST00000558925 OR10H2O60403 315 aa1.6□□□□□ -2.15
USP3-209ENST00000558925 TBCAO75347 108 aaKnown RBP1.6□□□□□ -2.15
USP3-209ENST00000558925 MOSPD3O75425 235 aa1.6□□□□□ -2.15
USP3-209ENST00000558925 RECQL5O94762 991 aaPredicted RBP1.6□□□□□ -2.15
USP3-209ENST00000558925 KDM4BO94953 1096 aa1.6□□□□□ -2.15
USP3-209ENST00000558925 GCNT3O95395 438 aa1.6□□□□□ -2.15
USP3-209ENST00000558925 ACSL3O95573 720 aa1.6□□□□□ -2.15
USP3-209ENST00000558925 TOMM40O96008 361 aa1.6□□□□□ -2.15
USP3-209ENST00000558925 FYNP06241 537 aa1.6□□□□□ -2.15
USP3-209ENST00000558925 SUPT20HL2P0C7V6 817 aa1.6□□□□□ -2.15
USP3-209ENST00000558925 SCG2P13521 617 aa1.6□□□□□ -2.15
USP3-209ENST00000558925 PFKFB1P16118 471 aa1.6□□□□□ -2.15
USP3-209ENST00000558925 GJA1P17302 382 aa1.6□□□□□ -2.15
USP3-209ENST00000558925 ERCC2P18074 760 aa1.6□□□□□ -2.15
USP3-209ENST00000558925 ACHEP22303 614 aa1.6□□□□□ -2.15
USP3-209ENST00000558925 KCNA5P22460 613 aa1.6□□□□□ -2.15
USP3-209ENST00000558925 NR2F2P24468 414 aa1.6□□□□□ -2.15
USP3-209ENST00000558925 MPZP25189 248 aa1.6□□□□□ -2.15
USP3-209ENST00000558925 PTPN3P26045 913 aa1.6□□□□□ -2.15
USP3-209ENST00000558925 OAS2P29728 719 aaKnown RBP1.6□□□□□ -2.15
USP3-209ENST00000558925 ARRB2P32121 409 aa1.6□□□□□ -2.15
USP3-209ENST00000558925 HSPA4P34932 840 aa1.6□□□□□ -2.15
USP3-209ENST00000558925 CRKLP46109 303 aaKnown RBP1.6□□□□□ -2.15
USP3-209ENST00000558925 RFX2P48378 723 aa1.6□□□□□ -2.15
USP3-209ENST00000558925 AMTP48728 403 aa1.6□□□□□ -2.15
USP3-209ENST00000558925 PCYT1AP49585 367 aa1.6□□□□□ -2.15
USP3-209ENST00000558925 PDLIM4P50479 330 aa1.6□□□□□ -2.15
USP3-209ENST00000558925 RAB28P51157 221 aa1.6□□□□□ -2.15
USP3-209ENST00000558925 SEC61BP60468 96 aaKnown RBP1.6□□□□□ -2.15
USP3-209ENST00000558925 SIRPAP78324 504 aa1.6□□□□□ -2.15
USP3-209ENST00000558925 C17orf67Q0P5P2 114 aa1.6□□□□□ -2.15
USP3-209ENST00000558925 BFSP1Q12934 665 aa1.6□□□□□ -2.15
USP3-209ENST00000558925 PRKAA1Q13131 559 aa1.6□□□□□ -2.15
USP3-209ENST00000558925 ZNF273Q14593 569 aa1.6□□□□□ -2.15
USP3-209ENST00000558925 MELKQ14680 651 aa1.6□□□□□ -2.15
USP3-209ENST00000558925 RAB6CQ53S08 254 aa1.6□□□□□ -2.15
USP3-209ENST00000558925 ZRANB3Q5FWF4 1079 aa1.6□□□□□ -2.15
USP3-209ENST00000558925 XKR9Q5GH70 373 aa1.6□□□□□ -2.15
USP3-209ENST00000558925 SLC10A5Q5PT55 438 aa1.6□□□□□ -2.15
USP3-209ENST00000558925 DNTTIP2Q5QJE6 756 aaKnown RBP1.6□□□□□ -2.15
USP3-209ENST00000558925 RNASEH2BQ5TBB1 312 aaKnown RBP1.6□□□□□ -2.15
USP3-209ENST00000558925 KRT39Q6A163 491 aa1.6□□□□□ -2.15
USP3-209ENST00000558925 ZBTB49Q6ZSB9 765 aa1.6□□□□□ -2.15
USP3-209ENST00000558925 TPRG1Q6ZUI0 275 aa1.6□□□□□ -2.15
USP3-209ENST00000558925 Q75L30 129 aa1.6□□□□□ -2.15
USP3-209ENST00000558925 MEPCEQ7L2J0 689 aaKnown RBP1.6□□□□□ -2.15
USP3-209ENST00000558925 PIWIL3Q7Z3Z3 882 aaKnown RBP1.6□□□□□ -2.15
USP3-209ENST00000558925 FJX1Q86VR8 437 aa1.6□□□□□ -2.15
USP3-209ENST00000558925 TMEM173Q86WV6 379 aaPredicted RBP1.6□□□□□ -2.15
USP3-209ENST00000558925 IQCA1Q86XH1 822 aa1.6□□□□□ -2.15
USP3-209ENST00000558925 FAM219AQ8IW50 185 aa1.6□□□□□ -2.15
USP3-209ENST00000558925 MAP7D3Q8IWC1 876 aa1.6□□□□□ -2.15
USP3-209ENST00000558925 FAM114A1Q8IWE2 563 aa1.6□□□□□ -2.15
USP3-209ENST00000558925 PM20D2Q8IYS1 436 aa1.6□□□□□ -2.15
USP3-209ENST00000558925 CEP57L1Q8IYX8 460 aa1.6□□□□□ -2.15
USP3-209ENST00000558925 SAMD14Q8IZD0 417 aaPredicted RBP1.6□□□□□ -2.15
USP3-209ENST00000558925 CCAR2Q8N163 923 aaKnown RBP1.6□□□□□ -2.15
USP3-209ENST00000558925 PELI3Q8N2H9 469 aa1.6□□□□□ -2.15
USP3-209ENST00000558925 ANKRD13CQ8N6S4 541 aa1.6□□□□□ -2.15
USP3-209ENST00000558925 EMC1Q8N766 993 aa1.6□□□□□ -2.15
USP3-209ENST00000558925 RBMXL3Q8N7X1 1067 aaKnown RBP1.6□□□□□ -2.15
USP3-209ENST00000558925 GOLGA6L2Q8N9W4 650 aaPredicted RBP1.6□□□□□ -2.15
USP3-209ENST00000558925 SLC38A9Q8NBW4 561 aa1.6□□□□□ -2.15
USP3-209ENST00000558925 MPLKIPQ8TAP9 179 aa1.6□□□□□ -2.15
Retrieved 100 of 20,778 RNA–protein pairs in 45.4 ms