RNA–Protein interactions for RNA: ENST00000552823.5

LIMA1-215, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 3,254 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-215ENST00000552823 HJURPQ8NCD3 748 aaPredicted RBP5.52□□□□□ -1.53
LIMA1-215ENST00000552823 GPR26Q8NDV2 337 aa5.52□□□□□ -1.53
LIMA1-215ENST00000552823 SPDYE1Q8NFV5 336 aaPredicted RBP5.52□□□□□ -1.53
LIMA1-215ENST00000552823 OR2T11Q8NH01 316 aa5.52□□□□□ -1.53
LIMA1-215ENST00000552823 CD200R1Q8TD46 325 aa5.52□□□□□ -1.53
LIMA1-215ENST00000552823 KLK6Q92876 244 aa5.52□□□□□ -1.53
LIMA1-215ENST00000552823 CCDC126Q96EE4 140 aa5.52□□□□□ -1.53
LIMA1-215ENST00000552823 MED8Q96G25 268 aa5.52□□□□□ -1.53
LIMA1-215ENST00000552823 BIRC8Q96P09 236 aa5.52□□□□□ -1.53
LIMA1-215ENST00000552823 NRTNQ99748 197 aa5.52□□□□□ -1.53
LIMA1-215ENST00000552823 TSEN34Q9BSV6 310 aaKnown RBP5.52□□□□□ -1.53
LIMA1-215ENST00000552823 VCX3BQ9H321 246 aa5.52□□□□□ -1.53
LIMA1-215ENST00000552823 LIN28AQ9H9Z2 209 aaKnown RBP5.52□□□□□ -1.53
LIMA1-215ENST00000552823 LHX3Q9UBR4 397 aa5.52□□□□□ -1.53
LIMA1-215ENST00000552823 ZNF225Q9UK10 706 aa5.52□□□□□ -1.53
LIMA1-215ENST00000552823 PSMD13Q9UNM6 376 aa5.52□□□□□ -1.53
LIMA1-215ENST00000552823 PCDHGA7Q9Y5G6 932 aa5.52□□□□□ -1.53
LIMA1-215ENST00000552823 CCDC154A6NI56 674 aa5.52□□□□□ -1.53
LIMA1-215ENST00000552823 LOC730098B7Z3J9 87 aa5.52□□□□□ -1.53
LIMA1-215ENST00000552823 NME4O00746 187 aa5.52□□□□□ -1.53
LIMA1-215ENST00000552823 CPSF4O95639 269 aaKnown RBP5.52□□□□□ -1.53
LIMA1-215ENST00000552823 GLUD1P00367 558 aa5.52□□□□□ -1.53
LIMA1-215ENST00000552823 ZDHHC11BP0C7U3 371 aa5.52□□□□□ -1.53
LIMA1-215ENST00000552823 ZNF7P17097 686 aaPredicted RBP5.52□□□□□ -1.53
LIMA1-215ENST00000552823 PREPP48147 710 aa5.52□□□□□ -1.53
LIMA1-215ENST00000552823 TTPAP49638 278 aa5.52□□□□□ -1.53
LIMA1-215ENST00000552823 MRPS35P82673 323 aaKnown RBP5.52□□□□□ -1.53
LIMA1-215ENST00000552823 ZNF33AQ06730 810 aa5.52□□□□□ -1.53
LIMA1-215ENST00000552823 LCP2Q13094 533 aa5.52□□□□□ -1.53
LIMA1-215ENST00000552823 FRG1Q14331 258 aaKnown RBP5.52□□□□□ -1.53
LIMA1-215ENST00000552823 ABRAXAS2Q15018 415 aa5.52□□□□□ -1.53
LIMA1-215ENST00000552823 PLEKHG6Q3KR16 790 aa5.52□□□□□ -1.53
LIMA1-215ENST00000552823 ATP6AP1LQ52LC2 224 aa5.52□□□□□ -1.53
LIMA1-215ENST00000552823 RFTN2Q52LD8 501 aaPredicted RBP5.52□□□□□ -1.53
LIMA1-215ENST00000552823 PIGGQ5H8A4 983 aa5.52□□□□□ -1.53
LIMA1-215ENST00000552823 ASTLQ6HA08 431 aaPredicted RBP5.52□□□□□ -1.53
LIMA1-215ENST00000552823 IRGCQ6NXR0 463 aa5.52□□□□□ -1.53
LIMA1-215ENST00000552823 NCEH1Q6PIU2 408 aa5.52□□□□□ -1.53
LIMA1-215ENST00000552823 BEND5Q7L4P6 421 aa5.52□□□□□ -1.53
LIMA1-215ENST00000552823 SLC39A11Q8N1S5 342 aa5.52□□□□□ -1.53
LIMA1-215ENST00000552823 OR56A4Q8NGH8 313 aa5.52□□□□□ -1.53
LIMA1-215ENST00000552823 DLG3Q92796 817 aa5.52□□□□□ -1.53
LIMA1-215ENST00000552823 SPATA17Q96L03 361 aa5.52□□□□□ -1.53
LIMA1-215ENST00000552823 TRIB3Q96RU7 358 aa5.52□□□□□ -1.53
LIMA1-215ENST00000552823 SIKE1Q9BRV8 207 aa5.52□□□□□ -1.53
LIMA1-215ENST00000552823 TMEM79Q9BSE2 394 aa5.52□□□□□ -1.53
LIMA1-215ENST00000552823 MCMBPQ9BTE3 642 aa5.52□□□□□ -1.53
LIMA1-215ENST00000552823 CCDC28BQ9BUN5 200 aa5.52□□□□□ -1.53
LIMA1-215ENST00000552823 SLC25A23Q9BV35 468 aa5.52□□□□□ -1.53
LIMA1-215ENST00000552823 ALG2Q9H553 416 aa5.52□□□□□ -1.53
LIMA1-215ENST00000552823 STN1Q9H668 368 aaKnown RBP5.52□□□□□ -1.53
LIMA1-215ENST00000552823 EXD2Q9NVH0 621 aa5.52□□□□□ -1.53
LIMA1-215ENST00000552823 IL17CQ9P0M4 197 aa5.52□□□□□ -1.53
LIMA1-215ENST00000552823 DGKBQ9Y6T7 804 aa5.52□□□□□ -1.53
LIMA1-215ENST00000552823 SPTBP11277 2137 aa5.52□□□□□ -1.53
LIMA1-215ENST00000552823 TRPM7Q96QT4 1865 aa5.51□□□□□ -1.53
LIMA1-215ENST00000552823 NYNRINQ9P2P1 1898 aaKnown RBP5.51□□□□□ -1.53
LIMA1-215ENST00000552823 MAP1BP46821 2468 aaKnown RBP5.51□□□□□ -1.53
LIMA1-215ENST00000552823 C15orf38-AP3S2A0A0A6YYH1 394 aa5.51□□□□□ -1.53
LIMA1-215ENST00000552823 TRIM43BA6NCK2 446 aa5.51□□□□□ -1.53
LIMA1-215ENST00000552823 TTC34A8MYJ7 566 aa5.51□□□□□ -1.53
LIMA1-215ENST00000552823 SAP18O00422 153 aaKnown RBP5.51□□□□□ -1.53
LIMA1-215ENST00000552823 GSTA4O15217 222 aa5.51□□□□□ -1.53
LIMA1-215ENST00000552823 FFAR2O15552 330 aa5.51□□□□□ -1.53
LIMA1-215ENST00000552823 TBC1D4O60343 1298 aa5.51□□□□□ -1.53
LIMA1-215ENST00000552823 IGLV3-27P01718 113 aa5.51□□□□□ -1.53
LIMA1-215ENST00000552823 ABCB1P08183 1280 aaPredicted RBP5.51□□□□□ -1.53
LIMA1-215ENST00000552823 ALOX15P16050 662 aaPredicted RBP5.51□□□□□ -1.53
LIMA1-215ENST00000552823 EPCAMP16422 314 aa5.51□□□□□ -1.53
LIMA1-215ENST00000552823 OXTRP30559 389 aa5.51□□□□□ -1.53
LIMA1-215ENST00000552823 HK2P52789 917 aa5.51□□□□□ -1.53
LIMA1-215ENST00000552823 METAP1P53582 386 aa5.51□□□□□ -1.53
LIMA1-215ENST00000552823 MESP2Q0VG99 397 aa5.51□□□□□ -1.53
LIMA1-215ENST00000552823 SELPLGQ14242 412 aa5.51□□□□□ -1.53
LIMA1-215ENST00000552823 TRIM25Q14258 630 aaKnown RBP5.51□□□□□ -1.53
LIMA1-215ENST00000552823 ARHGEF6Q15052 776 aa5.51□□□□□ -1.53
LIMA1-215ENST00000552823 ARSIQ5FYB1 569 aa5.51□□□□□ -1.53
LIMA1-215ENST00000552823 ANKRD34AQ69YU3 496 aa5.51□□□□□ -1.53
LIMA1-215ENST00000552823 TMEM214Q6NUQ4 689 aaKnown RBP5.51□□□□□ -1.53
LIMA1-215ENST00000552823 GCNT7Q6ZNI0 430 aa5.51□□□□□ -1.53
LIMA1-215ENST00000552823 ARPINQ7Z6K5 226 aa5.51□□□□□ -1.53
LIMA1-215ENST00000552823 KBTBD6Q86V97 674 aa5.51□□□□□ -1.53
LIMA1-215ENST00000552823 SLC15A3Q8IY34 581 aa5.51□□□□□ -1.53
LIMA1-215ENST00000552823 SCML4Q8N228 414 aa5.51□□□□□ -1.53
LIMA1-215ENST00000552823 ELMOD1Q8N336 334 aa5.51□□□□□ -1.53
LIMA1-215ENST00000552823 PCYOX1LQ8NBM8 494 aa5.51□□□□□ -1.53
LIMA1-215ENST00000552823 PDZD8Q8NEN9 1154 aa5.51□□□□□ -1.53
LIMA1-215ENST00000552823 GPR156Q8NFN8 814 aa5.51□□□□□ -1.53
LIMA1-215ENST00000552823 RIN3Q8TB24 985 aa5.51□□□□□ -1.53
LIMA1-215ENST00000552823 MAGEE2Q8TD90 523 aaPredicted RBP5.51□□□□□ -1.53
LIMA1-215ENST00000552823 ADAMTS19Q8TE59 1207 aa5.51□□□□□ -1.53
LIMA1-215ENST00000552823 TOP1MTQ969P6 601 aa5.51□□□□□ -1.53
LIMA1-215ENST00000552823 PPP2R3CQ969Q6 453 aa5.51□□□□□ -1.53
LIMA1-215ENST00000552823 KIAA1191Q96A73 305 aa5.51□□□□□ -1.53
LIMA1-215ENST00000552823 TRIM43Q96BQ3 446 aaPredicted RBP5.51□□□□□ -1.53
LIMA1-215ENST00000552823 ZSWIM3Q96MP5 696 aa5.51□□□□□ -1.53
LIMA1-215ENST00000552823 CENPKQ9BS16 269 aa5.51□□□□□ -1.53
LIMA1-215ENST00000552823 C1orf21Q9H246 121 aa5.51□□□□□ -1.53
LIMA1-215ENST00000552823 SPAG4Q9NPE6 437 aa5.51□□□□□ -1.53
LIMA1-215ENST00000552823 ASAH2Q9NR71 780 aa5.51□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms