RNA–Protein interactions for RNA: ENST00000543205.1

CLIP1-217, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2

Gene CLIP1, Length 2,018 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-217ENST00000543205 CARD9Q9H257 536 aa5.12□□□□□ -1.59
CLIP1-217ENST00000543205 KCND1Q9NSA2 647 aa5.12□□□□□ -1.59
CLIP1-217ENST00000543205 SEPT10Q9P0V9 454 aa5.12□□□□□ -1.59
CLIP1-217ENST00000543205 SAE1Q9UBE0 346 aaPredicted RBP5.12□□□□□ -1.59
CLIP1-217ENST00000543205 HECAQ9UBI9 543 aaPredicted RBP5.12□□□□□ -1.59
CLIP1-217ENST00000543205 EBF1Q9UH73 591 aa5.12□□□□□ -1.59
CLIP1-217ENST00000543205 CBLCQ9ULV8 474 aa5.12□□□□□ -1.59
CLIP1-217ENST00000543205 ATP23Q9Y6H3 246 aa5.12□□□□□ -1.59
CLIP1-217ENST00000543205 USP34Q70CQ2 3546 aa5.12□□□□□ -1.59
CLIP1-217ENST00000543205 DOCK4Q8N1I0 1966 aa5.11□□□□□ -1.59
CLIP1-217ENST00000543205 HACD1B0YJ81 288 aa5.11□□□□□ -1.59
CLIP1-217ENST00000543205 C1QTNF3-AMACRE9PGA6 284 aa5.11□□□□□ -1.59
CLIP1-217ENST00000543205 H0Y858 1186 aa5.11□□□□□ -1.59
CLIP1-217ENST00000543205 H7C0C1 242 aa5.11□□□□□ -1.59
CLIP1-217ENST00000543205 SYT5O00445 386 aa5.11□□□□□ -1.59
CLIP1-217ENST00000543205 KRIT1O00522 736 aa5.11□□□□□ -1.59
CLIP1-217ENST00000543205 MCF2LO15068 1137 aa5.11□□□□□ -1.59
CLIP1-217ENST00000543205 CEP104O60308 925 aa5.11□□□□□ -1.59
CLIP1-217ENST00000543205 ZNF217O75362 1048 aa5.11□□□□□ -1.59
CLIP1-217ENST00000543205 PTP4A3O75365 173 aa5.11□□□□□ -1.59
CLIP1-217ENST00000543205 ZNF821O75541 412 aaPredicted RBP5.11□□□□□ -1.59
CLIP1-217ENST00000543205 POP4O95707 220 aaKnown RBP5.11□□□□□ -1.59
CLIP1-217ENST00000543205 IL1BP01584 269 aa5.11□□□□□ -1.59
CLIP1-217ENST00000543205 PRNPP04156 253 aa5.11□□□□□ -1.59
CLIP1-217ENST00000543205 CLEC2LP0C7M8 214 aa5.11□□□□□ -1.59
CLIP1-217ENST00000543205 TDGF1P13385 188 aa5.11□□□□□ -1.59
CLIP1-217ENST00000543205 CCNB1P14635 433 aa5.11□□□□□ -1.59
CLIP1-217ENST00000543205 PECAM1P16284 738 aaPredicted RBP5.11□□□□□ -1.59
CLIP1-217ENST00000543205 CHRNA3P32297 505 aa5.11□□□□□ -1.59
CLIP1-217ENST00000543205 HSPA9P38646 679 aaKnown RBP5.11□□□□□ -1.59
CLIP1-217ENST00000543205 HADHAP40939 763 aa5.11□□□□□ -1.59
CLIP1-217ENST00000543205 MMP13P45452 471 aa5.11□□□□□ -1.59
CLIP1-217ENST00000543205 ATP5OP48047 213 aa5.11□□□□□ -1.59
CLIP1-217ENST00000543205 PSMD8P48556 350 aa5.11□□□□□ -1.59
CLIP1-217ENST00000543205 CLCN2P51788 898 aa5.11□□□□□ -1.59
CLIP1-217ENST00000543205 RPS14P62263 151 aaKnown RBP5.11□□□□□ -1.59
CLIP1-217ENST00000543205 ZBTB16Q05516 673 aa5.11□□□□□ -1.59
CLIP1-217ENST00000543205 ADCY2Q08462 1091 aa5.11□□□□□ -1.59
CLIP1-217ENST00000543205 PPIDQ08752 370 aaKnown RBP5.11□□□□□ -1.59
CLIP1-217ENST00000543205 DMWDQ09019 674 aa5.11□□□□□ -1.59
CLIP1-217ENST00000543205 SLC10A7Q0GE19 358 aa5.11□□□□□ -1.59
CLIP1-217ENST00000543205 SLMAPQ14BN4 828 aa5.11□□□□□ -1.59
CLIP1-217ENST00000543205 PPA1Q15181 289 aa5.11□□□□□ -1.59
CLIP1-217ENST00000543205 MYLK3Q32MK0 819 aa5.11□□□□□ -1.59
CLIP1-217ENST00000543205 C3orf36Q3SXR2 165 aa5.11□□□□□ -1.59
CLIP1-217ENST00000543205 TTC31Q49AM3 519 aaPredicted RBP5.11□□□□□ -1.59
CLIP1-217ENST00000543205 ATXN7L2Q5T6C5 722 aaPredicted RBP5.11□□□□□ -1.59
CLIP1-217ENST00000543205 FAM46CQ5VWP2 391 aa5.11□□□□□ -1.59
CLIP1-217ENST00000543205 DPY19L3Q6ZPD9 716 aa5.11□□□□□ -1.59
CLIP1-217ENST00000543205 ZC3H18Q86VM9 953 aaKnown RBP5.11□□□□□ -1.59
CLIP1-217ENST00000543205 WDR5BQ86VZ2 330 aa5.11□□□□□ -1.59
CLIP1-217ENST00000543205 CACUL1Q86Y37 369 aa5.11□□□□□ -1.59
CLIP1-217ENST00000543205 C17orf53Q8N3J3 647 aaPredicted RBP5.11□□□□□ -1.59
CLIP1-217ENST00000543205 ZNF610Q8N9Z0 462 aa5.11□□□□□ -1.59
CLIP1-217ENST00000543205 TMIEQ8NEW7 156 aa5.11□□□□□ -1.59
CLIP1-217ENST00000543205 OR2AP1Q8NGE2 309 aa5.11□□□□□ -1.59
CLIP1-217ENST00000543205 OR2A12Q8NGT7 310 aa5.11□□□□□ -1.59
CLIP1-217ENST00000543205 HDAC11Q96DB2 347 aa5.11□□□□□ -1.59
CLIP1-217ENST00000543205 RBM18Q96H35 190 aaKnown RBP5.11□□□□□ -1.59
CLIP1-217ENST00000543205 PBKQ96KB5 322 aa5.11□□□□□ -1.59
CLIP1-217ENST00000543205 OLFM3Q96PB7 478 aa5.11□□□□□ -1.59
CLIP1-217ENST00000543205 LGMNQ99538 433 aa5.11□□□□□ -1.59
CLIP1-217ENST00000543205 OMDQ99983 421 aa5.11□□□□□ -1.59
CLIP1-217ENST00000543205 TPSD1Q9BZJ3 242 aa5.11□□□□□ -1.59
CLIP1-217ENST00000543205 PAIP1Q9H074 479 aaKnown RBP5.11□□□□□ -1.59
CLIP1-217ENST00000543205 SLC6A17Q9H1V8 727 aa5.11□□□□□ -1.59
CLIP1-217ENST00000543205 ZDHHC6Q9H6R6 413 aa5.11□□□□□ -1.59
CLIP1-217ENST00000543205 ZMAT4Q9H898 229 aa5.11□□□□□ -1.59
CLIP1-217ENST00000543205 XAB2Q9HCS7 855 aaKnown RBP5.11□□□□□ -1.59
CLIP1-217ENST00000543205 DYRK4Q9NR20 520 aa5.11□□□□□ -1.59
CLIP1-217ENST00000543205 ZSCAN32Q9NX65 697 aa5.11□□□□□ -1.59
CLIP1-217ENST00000543205 IL36AQ9UHA7 158 aa5.11□□□□□ -1.59
CLIP1-217ENST00000543205 SLC39A10Q9ULF5 831 aa5.11□□□□□ -1.59
CLIP1-217ENST00000543205 SCML1Q9UN30 329 aa5.11□□□□□ -1.59
CLIP1-217ENST00000543205 NCKAP1Q9Y2A7 1128 aa5.11□□□□□ -1.59
CLIP1-217ENST00000543205 SPO11Q9Y5K1 396 aa5.11□□□□□ -1.59
CLIP1-217ENST00000543205 CTAGE9A4FU28 777 aa5.11□□□□□ -1.59
CLIP1-217ENST00000543205 ERICH4A6NGS2 130 aa5.11□□□□□ -1.59
CLIP1-217ENST00000543205 PRR19A6NJB7 356 aa5.11□□□□□ -1.59
CLIP1-217ENST00000543205 MTSS1O43312 755 aa5.11□□□□□ -1.59
CLIP1-217ENST00000543205 PGM3O95394 542 aa5.11□□□□□ -1.59
CLIP1-217ENST00000543205 JCHAINP01591 159 aa5.11□□□□□ -1.59
CLIP1-217ENST00000543205 ATP1A1P05023 1023 aaKnown RBP5.11□□□□□ -1.59
CLIP1-217ENST00000543205 IL11P20809 199 aa5.11□□□□□ -1.59
CLIP1-217ENST00000543205 ENPP1P22413 925 aa5.11□□□□□ -1.59
CLIP1-217ENST00000543205 CXCR5P32302 372 aa5.11□□□□□ -1.59
CLIP1-217ENST00000543205 SLC8A1P32418 973 aa5.11□□□□□ -1.59
CLIP1-217ENST00000543205 LSP1P33241 339 aa5.11□□□□□ -1.59
CLIP1-217ENST00000543205 KIR3DL1P43629 444 aa5.11□□□□□ -1.59
CLIP1-217ENST00000543205 CCNHP51946 323 aaPredicted RBP5.11□□□□□ -1.59
CLIP1-217ENST00000543205 EIF3EP60228 445 aaKnown RBP5.11□□□□□ -1.59
CLIP1-217ENST00000543205 GPR85P60893 370 aa5.11□□□□□ -1.59
CLIP1-217ENST00000543205 OTUD4Q01804 1114 aaKnown RBP5.11□□□□□ -1.59
CLIP1-217ENST00000543205 ZNF33AQ06730 810 aa5.11□□□□□ -1.59
CLIP1-217ENST00000543205 NSUN2Q08J23 767 aaKnown RBP eCLIP5.11□□□□□ -1.59
CLIP1-217ENST00000543205 CCDC15Q0P6D6 951 aa5.11□□□□□ -1.59
CLIP1-217ENST00000543205 XRCC4Q13426 336 aa5.11□□□□□ -1.59
CLIP1-217ENST00000543205 HNRNPDQ14103 355 aaKnown RBP5.11□□□□□ -1.59
CLIP1-217ENST00000543205 DAG1Q14118 895 aa5.11□□□□□ -1.59
CLIP1-217ENST00000543205 PTK2BQ14289 1009 aa5.11□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 41.6 ms