RNA–Protein interactions for RNA: ENST00000542845.3

LIMS1-214, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 5

Gene LIMS1, Length 727 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-214ENST00000542845 NLNQ9BYT8 704 aa4.68□□□□□ -1.66
LIMS1-214ENST00000542845 PDCL3Q9H2J4 239 aa4.68□□□□□ -1.66
LIMS1-214ENST00000542845 RASSF4Q9H2L5 321 aa4.68□□□□□ -1.66
LIMS1-214ENST00000542845 EPB41L1Q9H4G0 881 aa4.68□□□□□ -1.66
LIMS1-214ENST00000542845 ATP13A2Q9NQ11 1180 aa4.68□□□□□ -1.66
LIMS1-214ENST00000542845 KCND1Q9NSA2 647 aa4.68□□□□□ -1.66
LIMS1-214ENST00000542845 TMEM248Q9NWD8 314 aa4.68□□□□□ -1.66
LIMS1-214ENST00000542845 UBA2Q9UBT2 640 aaPredicted RBP4.68□□□□□ -1.66
LIMS1-214ENST00000542845 ARMCX3Q9UH62 379 aaPredicted RBP4.68□□□□□ -1.66
LIMS1-214ENST00000542845 PCDHA7Q9UN72 937 aa4.68□□□□□ -1.66
LIMS1-214ENST00000542845 SIK3Q9Y2K2 1263 aa4.68□□□□□ -1.66
LIMS1-214ENST00000542845 PCYT1BQ9Y5K3 369 aaPredicted RBP4.68□□□□□ -1.66
LIMS1-214ENST00000542845 DCHS2Q6V1P9 2916 aa4.68□□□□□ -1.66
LIMS1-214ENST00000542845 MTORP42345 2549 aa4.68□□□□□ -1.66
LIMS1-214ENST00000542845 TACC2O95359 2948 aa4.67□□□□□ -1.66
LIMS1-214ENST00000542845 PRRC2AP48634 2157 aaKnown RBP4.67□□□□□ -1.66
LIMS1-214ENST00000542845 KIR2DS5A0A0G2JLQ3 304 aa4.67□□□□□ -1.66
LIMS1-214ENST00000542845 A0A0G2JNG1 304 aa4.67□□□□□ -1.66
LIMS1-214ENST00000542845 A0A1B0GVL5 298 aa4.67□□□□□ -1.66
LIMS1-214ENST00000542845 UBA6A0AVT1 1052 aaPredicted RBP4.67□□□□□ -1.66
LIMS1-214ENST00000542845 FAM221AA4D161 298 aa4.67□□□□□ -1.66
LIMS1-214ENST00000542845 LILRA5A6NI73 299 aa4.67□□□□□ -1.66
LIMS1-214ENST00000542845 OR5K4A6NMS3 321 aa4.67□□□□□ -1.66
LIMS1-214ENST00000542845 PDZK1P1A8MUH7 402 aa4.67□□□□□ -1.66
LIMS1-214ENST00000542845 J3QW42 95 aa4.67□□□□□ -1.66
LIMS1-214ENST00000542845 KIR2DS3K7RE56 304 aa4.67□□□□□ -1.66
LIMS1-214ENST00000542845 FANCGO15287 622 aa4.67□□□□□ -1.66
LIMS1-214ENST00000542845 ALOX12BO75342 701 aa4.67□□□□□ -1.66
LIMS1-214ENST00000542845 PALMO75781 387 aa4.67□□□□□ -1.66
LIMS1-214ENST00000542845 LRIG2O94898 1065 aa4.67□□□□□ -1.66
LIMS1-214ENST00000542845 LCA5LO95447 670 aa4.67□□□□□ -1.66
LIMS1-214ENST00000542845 CPP00450 1065 aa4.67□□□□□ -1.66
LIMS1-214ENST00000542845 RAB40ALP0C0E4 278 aa4.67□□□□□ -1.66
LIMS1-214ENST00000542845 CTPS1P17812 591 aa4.67□□□□□ -1.66
LIMS1-214ENST00000542845 EPHB2P29323 1055 aa4.67□□□□□ -1.66
LIMS1-214ENST00000542845 ADSLP30566 484 aaPredicted RBP4.67□□□□□ -1.66
LIMS1-214ENST00000542845 VIPR1P32241 457 aa4.67□□□□□ -1.66
LIMS1-214ENST00000542845 ADRA1BP35368 520 aa4.67□□□□□ -1.66
LIMS1-214ENST00000542845 FLT3P36888 993 aa4.67□□□□□ -1.66
LIMS1-214ENST00000542845 TSFMP43897 325 aaKnown RBP4.67□□□□□ -1.66
LIMS1-214ENST00000542845 ARCN1P48444 511 aaKnown RBP4.67□□□□□ -1.66
LIMS1-214ENST00000542845 CASP6P55212 293 aa4.67□□□□□ -1.66
LIMS1-214ENST00000542845 ADORA2A-AS1P86434 159 aa4.67□□□□□ -1.66
LIMS1-214ENST00000542845 TNP2Q05952 138 aa4.67□□□□□ -1.66
LIMS1-214ENST00000542845 LRP8Q14114 963 aa4.67□□□□□ -1.66
LIMS1-214ENST00000542845 KIR2DS5Q14953 304 aa4.67□□□□□ -1.66
LIMS1-214ENST00000542845 PRKD1Q15139 912 aaPredicted RBP4.67□□□□□ -1.66
LIMS1-214ENST00000542845 TCEAL1Q15170 157 aa4.67□□□□□ -1.66
LIMS1-214ENST00000542845 CEBPEQ15744 281 aa4.67□□□□□ -1.66
LIMS1-214ENST00000542845 PPP2R5EQ16537 467 aa4.67□□□□□ -1.66
LIMS1-214ENST00000542845 C15orf59Q2T9L4 293 aaPredicted RBP4.67□□□□□ -1.66
LIMS1-214ENST00000542845 CCDC40Q4G0X9 1142 aa4.67□□□□□ -1.66
LIMS1-214ENST00000542845 PTPN20Q4JDL3 420 aa4.67□□□□□ -1.66
LIMS1-214ENST00000542845 TDRD12Q587J7 1177 aaKnown RBP4.67□□□□□ -1.66
LIMS1-214ENST00000542845 PLEKHS1Q5SXH7 462 aa4.67□□□□□ -1.66
LIMS1-214ENST00000542845 RESP18Q5W5W9 173 aa4.67□□□□□ -1.66
LIMS1-214ENST00000542845 MTFR2Q6P444 385 aa4.67□□□□□ -1.66
LIMS1-214ENST00000542845 GJB7Q6PEY0 223 aa4.67□□□□□ -1.66
LIMS1-214ENST00000542845 FBXO38Q6PIJ6 1188 aa4.67□□□□□ -1.66
LIMS1-214ENST00000542845 RPTNQ6XPR3 784 aa4.67□□□□□ -1.66
LIMS1-214ENST00000542845 SPOCD1Q6ZMY3 1216 aa4.67□□□□□ -1.66
LIMS1-214ENST00000542845 LINC00696Q6ZRV3 163 aa4.67□□□□□ -1.66
LIMS1-214ENST00000542845 GK5Q6ZS86 529 aa4.67□□□□□ -1.66
LIMS1-214ENST00000542845 NCCRP1Q6ZVX7 275 aaPredicted RBP4.67□□□□□ -1.66
LIMS1-214ENST00000542845 CXXC5Q7LFL8 322 aaKnown RBP4.67□□□□□ -1.66
LIMS1-214ENST00000542845 TSPAN33Q86UF1 283 aa4.67□□□□□ -1.66
LIMS1-214ENST00000542845 NLRP14Q86W24 1093 aa4.67□□□□□ -1.66
LIMS1-214ENST00000542845 PHYKPLQ8IUZ5 450 aa4.67□□□□□ -1.66
LIMS1-214ENST00000542845 DSELQ8IZU8 1212 aa4.67□□□□□ -1.66
LIMS1-214ENST00000542845 PYROXD2Q8N2H3 581 aa4.67□□□□□ -1.66
LIMS1-214ENST00000542845 EMC1Q8N766 993 aa4.67□□□□□ -1.66
LIMS1-214ENST00000542845 BCORP1Q8N888 145 aa4.67□□□□□ -1.66
LIMS1-214ENST00000542845 CPT1BQ92523 772 aa4.67□□□□□ -1.66
LIMS1-214ENST00000542845 GTPBP3Q969Y2 492 aaKnown RBP4.67□□□□□ -1.66
LIMS1-214ENST00000542845 SLC35C1Q96A29 364 aa4.67□□□□□ -1.66
LIMS1-214ENST00000542845 AP2M1Q96CW1 435 aa4.67□□□□□ -1.66
LIMS1-214ENST00000542845 PGAP3Q96FM1 320 aaPredicted RBP4.67□□□□□ -1.66
LIMS1-214ENST00000542845 DTD2Q96FN9 168 aa4.67□□□□□ -1.66
LIMS1-214ENST00000542845 SCARF2Q96GP6 870 aaPredicted RBP4.67□□□□□ -1.66
LIMS1-214ENST00000542845 ZNF514Q96K75 400 aaPredicted RBP4.67□□□□□ -1.66
LIMS1-214ENST00000542845 TUBGCP5Q96RT8 1024 aa4.67□□□□□ -1.66
LIMS1-214ENST00000542845 AGAP2Q99490 1192 aa4.67□□□□□ -1.66
LIMS1-214ENST00000542845 SLC30A3Q99726 388 aa4.67□□□□□ -1.66
LIMS1-214ENST00000542845 MAP3K3Q99759 626 aa4.67□□□□□ -1.66
LIMS1-214ENST00000542845 HERPUD2Q9BSE4 406 aa4.67□□□□□ -1.66
LIMS1-214ENST00000542845 SCAND2PQ9GZW5 306 aaPredicted RBP4.67□□□□□ -1.66
LIMS1-214ENST00000542845 ABCG8Q9H221 673 aa4.67□□□□□ -1.66
LIMS1-214ENST00000542845 ARFGAP3Q9NP61 516 aa4.67□□□□□ -1.66
LIMS1-214ENST00000542845 KLC4Q9NSK0 619 aa4.67□□□□□ -1.66
LIMS1-214ENST00000542845 SOHLH2Q9NX45 425 aa4.67□□□□□ -1.66
LIMS1-214ENST00000542845 KCTD5Q9NXV2 234 aa4.67□□□□□ -1.66
LIMS1-214ENST00000542845 ACTR10Q9NZ32 417 aa4.67□□□□□ -1.66
LIMS1-214ENST00000542845 DNAJC16Q9Y2G8 782 aa4.67□□□□□ -1.66
LIMS1-214ENST00000542845 PTRH2Q9Y3E5 179 aaKnown RBP4.67□□□□□ -1.66
LIMS1-214ENST00000542845 SPG11Q96JI7 2443 aa4.67□□□□□ -1.66
LIMS1-214ENST00000542845 CXorf51AA0A1B0GTR3 108 aa4.66□□□□□ -1.66
LIMS1-214ENST00000542845 TRIM49BA6NDI0 452 aa4.66□□□□□ -1.66
LIMS1-214ENST00000542845 C9J4A7 227 aa4.66□□□□□ -1.66
LIMS1-214ENST00000542845 DNAJC6O75061 913 aa4.66□□□□□ -1.66
LIMS1-214ENST00000542845 HEXIM1O94992 359 aaKnown RBP4.66□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 44.9 ms