RNA–Protein interactions for RNA: ENST00000533806.5

VPS28-216, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 650 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-216ENST00000533806 SLC2A4P14672 509 aa12.74□□□□□ -0.37
VPS28-216ENST00000533806 MGAT1P26572 445 aa12.74□□□□□ -0.37
VPS28-216ENST00000533806 RPL10P27635 214 aaKnown RBP12.74□□□□□ -0.37
VPS28-216ENST00000533806 AKT1P31749 480 aa12.74□□□□□ -0.37
VPS28-216ENST00000533806 DRG2P55039 364 aaKnown RBP12.74□□□□□ -0.37
VPS28-216ENST00000533806 HHEXQ03014 270 aa12.74□□□□□ -0.37
VPS28-216ENST00000533806 PTK6Q13882 451 aa12.74□□□□□ -0.37
VPS28-216ENST00000533806 NFE2L1Q14494 772 aa12.74□□□□□ -0.37
VPS28-216ENST00000533806 ITIH4Q14624 930 aa12.74□□□□□ -0.37
VPS28-216ENST00000533806 CLCA4Q14CN2 919 aa12.74□□□□□ -0.37
VPS28-216ENST00000533806 RNASEH2BQ5TBB1 312 aaKnown RBP12.74□□□□□ -0.37
VPS28-216ENST00000533806 PACS1Q6VY07 963 aa12.74□□□□□ -0.37
VPS28-216ENST00000533806 DET1Q7L5Y6 550 aa12.74□□□□□ -0.37
VPS28-216ENST00000533806 SLC9B2Q86UD5 537 aa12.74□□□□□ -0.37
VPS28-216ENST00000533806 SLITRK4Q8IW52 837 aa12.74□□□□□ -0.37
VPS28-216ENST00000533806 AGGF1Q8N302 714 aaeCLIP12.74□□□□□ -0.37
VPS28-216ENST00000533806 CLDN19Q8N6F1 224 aa12.74□□□□□ -0.37
VPS28-216ENST00000533806 OR4L1Q8NH43 312 aa12.74□□□□□ -0.37
VPS28-216ENST00000533806 ATXN7L3BQ96GX2 97 aa12.74□□□□□ -0.37
VPS28-216ENST00000533806 PRR11Q96HE9 360 aaPredicted RBP12.74□□□□□ -0.37
VPS28-216ENST00000533806 CAPZA3Q96KX2 299 aa12.74□□□□□ -0.37
VPS28-216ENST00000533806 OSGEPL1Q9H4B0 414 aa12.74□□□□□ -0.37
VPS28-216ENST00000533806 UCK1Q9HA47 277 aa12.74□□□□□ -0.37
VPS28-216ENST00000533806 SLC40A1Q9NP59 571 aa12.74□□□□□ -0.37
VPS28-216ENST00000533806 SYBUQ9NX95 663 aa12.74□□□□□ -0.37
VPS28-216ENST00000533806 BFARQ9NZS9 450 aa12.74□□□□□ -0.37
VPS28-216ENST00000533806 PDP2Q9P2J9 529 aa12.74□□□□□ -0.37
VPS28-216ENST00000533806 CPNE7Q9UBL6 633 aa12.74□□□□□ -0.37
VPS28-216ENST00000533806 SOX13Q9UN79 622 aa12.74□□□□□ -0.37
VPS28-216ENST00000533806 MYLKQ15746 1914 aa12.73□□□□□ -0.37
VPS28-216ENST00000533806 PRAMEF33A0A0G2JMD5 474 aa12.73□□□□□ -0.37
VPS28-216ENST00000533806 DXOO77932 396 aaKnown RBP12.73□□□□□ -0.37
VPS28-216ENST00000533806 AP2A2O94973 939 aa12.73□□□□□ -0.37
VPS28-216ENST00000533806 RALBP11234 206 aa12.73□□□□□ -0.37
VPS28-216ENST00000533806 VCLP18206 1134 aa12.73□□□□□ -0.37
VPS28-216ENST00000533806 NMBRP28336 390 aa12.73□□□□□ -0.37
VPS28-216ENST00000533806 ALDH4A1P30038 563 aa12.73□□□□□ -0.37
VPS28-216ENST00000533806 CCKBRP32239 447 aa12.73□□□□□ -0.37
VPS28-216ENST00000533806 CYP4F3Q08477 520 aa12.73□□□□□ -0.37
VPS28-216ENST00000533806 SEMA3AQ14563 771 aa12.73□□□□□ -0.37
VPS28-216ENST00000533806 IGF2-ASQ6U949 168 aa12.73□□□□□ -0.37
VPS28-216ENST00000533806 AFTPHQ6ULP2 937 aa12.73□□□□□ -0.37
VPS28-216ENST00000533806 CERS6Q6ZMG9 384 aa12.73□□□□□ -0.37
VPS28-216ENST00000533806 TAS2R42Q7RTR8 314 aa12.73□□□□□ -0.37
VPS28-216ENST00000533806 MPP5Q8N3R9 675 aa12.73□□□□□ -0.37
VPS28-216ENST00000533806 PPHLN1Q8NEY8 458 aaKnown RBP12.73□□□□□ -0.37
VPS28-216ENST00000533806 MDM1Q8TC05 714 aa12.73□□□□□ -0.37
VPS28-216ENST00000533806 SH3KBP1Q96B97 665 aa12.73□□□□□ -0.37
VPS28-216ENST00000533806 DCUN1D1Q96GG9 259 aa12.73□□□□□ -0.37
VPS28-216ENST00000533806 LIN37Q96GY3 246 aaPredicted RBP12.73□□□□□ -0.37
VPS28-216ENST00000533806 SERPINB12Q96P63 405 aa12.73□□□□□ -0.37
VPS28-216ENST00000533806 NUDT22Q9BRQ3 303 aa12.73□□□□□ -0.37
VPS28-216ENST00000533806 EIF2AK3Q9NZJ5 1116 aaKnown RBP12.73□□□□□ -0.37
VPS28-216ENST00000533806 MARCH4Q9P2E8 410 aaPredicted RBP12.73□□□□□ -0.37
VPS28-216ENST00000533806 ATXN7L1Q9ULK2 861 aaPredicted RBP12.73□□□□□ -0.37
VPS28-216ENST00000533806 PRSS21Q9Y6M0 314 aa12.73□□□□□ -0.37
VPS28-216ENST00000533806 ZFHX4Q86UP3 3567 aa12.73□□□□□ -0.37
VPS28-216ENST00000533806 APC2O95996 2303 aa12.72□□□□□ -0.37
VPS28-216ENST00000533806 LILRA5A6NI73 299 aa12.72□□□□□ -0.37
VPS28-216ENST00000533806 OR52A4PA6NMU1 304 aa12.72□□□□□ -0.37
VPS28-216ENST00000533806 CFAP99D6REC4 459 aa12.72□□□□□ -0.37
VPS28-216ENST00000533806 TP73O15350 636 aa12.72□□□□□ -0.37
VPS28-216ENST00000533806 CPNE6O95741 557 aa12.72□□□□□ -0.37
VPS28-216ENST00000533806 HOXB3P14651 431 aaPredicted RBP12.72□□□□□ -0.37
VPS28-216ENST00000533806 CSF2RBP32927 897 aa12.72□□□□□ -0.37
VPS28-216ENST00000533806 NSG1P42857 185 aa12.72□□□□□ -0.37
VPS28-216ENST00000533806 ARCN1P48444 511 aaKnown RBP12.72□□□□□ -0.37
VPS28-216ENST00000533806 LSSP48449 732 aa12.72□□□□□ -0.37
VPS28-216ENST00000533806 TERF1P54274 439 aa12.72□□□□□ -0.37
VPS28-216ENST00000533806 EPHA4P54764 986 aa12.72□□□□□ -0.37
VPS28-216ENST00000533806 GPLD1P80108 840 aa12.72□□□□□ -0.37
VPS28-216ENST00000533806 SARNPP82979 210 aaKnown RBP12.72□□□□□ -0.37
VPS28-216ENST00000533806 RPE65Q16518 533 aa12.72□□□□□ -0.37
VPS28-216ENST00000533806 LYPLAL1Q5VWZ2 237 aa12.72□□□□□ -0.37
VPS28-216ENST00000533806 NKAIN2Q5VXU1 208 aa12.72□□□□□ -0.37
VPS28-216ENST00000533806 CAPRIN2Q6IMN6 1127 aaKnown RBP12.72□□□□□ -0.37
VPS28-216ENST00000533806 SYDE1Q6ZW31 735 aaPredicted RBP12.72□□□□□ -0.37
VPS28-216ENST00000533806 USP53Q70EK8 1073 aa12.72□□□□□ -0.37
VPS28-216ENST00000533806 TMEM135Q86UB9 458 aa12.72□□□□□ -0.37
VPS28-216ENST00000533806 ZNF761Q86XN6 746 aaPredicted RBP12.72□□□□□ -0.37
VPS28-216ENST00000533806 PPIL6Q8IXY8 311 aa12.72□□□□□ -0.37
VPS28-216ENST00000533806 LILRA3Q8N6C8 439 aaPredicted RBP12.72□□□□□ -0.37
VPS28-216ENST00000533806 AVL9Q8NBF6 648 aa12.72□□□□□ -0.37
VPS28-216ENST00000533806 NXPE2Q96DL1 559 aa12.72□□□□□ -0.37
VPS28-216ENST00000533806 MFSD3Q96ES6 412 aa12.72□□□□□ -0.37
VPS28-216ENST00000533806 SIGLEC10Q96LC7 697 aa12.72□□□□□ -0.37
VPS28-216ENST00000533806 FOXP3Q9BZS1 431 aa12.72□□□□□ -0.37
VPS28-216ENST00000533806 SEMA6CQ9H3T2 930 aa12.72□□□□□ -0.37
VPS28-216ENST00000533806 CCDC86Q9H6F5 360 aaKnown RBP12.72□□□□□ -0.37
VPS28-216ENST00000533806 POLR1BQ9H9Y6 1135 aa12.72□□□□□ -0.37
VPS28-216ENST00000533806 RDH14Q9HBH5 336 aa12.72□□□□□ -0.37
VPS28-216ENST00000533806 XAB2Q9HCS7 855 aaKnown RBP12.72□□□□□ -0.37
VPS28-216ENST00000533806 POT1Q9NUX5 634 aa12.72□□□□□ -0.37
VPS28-216ENST00000533806 KCNK4Q9NYG8 393 aa12.72□□□□□ -0.37
VPS28-216ENST00000533806 OGFRQ9NZT2 677 aa12.72□□□□□ -0.37
VPS28-216ENST00000533806 ACSL5Q9ULC5 683 aa12.72□□□□□ -0.37
VPS28-216ENST00000533806 PCDHGA8Q9Y5G5 932 aa12.72□□□□□ -0.37
VPS28-216ENST00000533806 ITPR1Q14643 2758 aa12.72□□□□□ -0.37
VPS28-216ENST00000533806 IGHV5-10-1A0A0J9YXX1 117 aa12.71□□□□□ -0.37
VPS28-216ENST00000533806 MAGEB16A2A368 324 aa12.71□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 8.5 ms