RNA–Protein interactions for RNA: ENST00000513643.5

RNF4-221, Transcript of ring finger protein 4, humanhuman

TSL 3

Gene RNF4, Length 516 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-221ENST00000513643 NPY2RP49146 381 aa9.53□□□□□ -0.88
RNF4-221ENST00000513643 PRLHRP49683 370 aa9.53□□□□□ -0.88
RNF4-221ENST00000513643 INHBCP55103 352 aa9.53□□□□□ -0.88
RNF4-221ENST00000513643 GABREP78334 506 aa9.53□□□□□ -0.88
RNF4-221ENST00000513643 TMPRSS15P98073 1019 aa9.53□□□□□ -0.88
RNF4-221ENST00000513643 CACNG1Q06432 222 aa9.53□□□□□ -0.88
RNF4-221ENST00000513643 TRA2AQ13595 282 aaKnown RBP eCLIP9.53□□□□□ -0.88
RNF4-221ENST00000513643 KCNJ11Q14654 390 aa9.53□□□□□ -0.88
RNF4-221ENST00000513643 GSE1Q14687 1217 aa9.53□□□□□ -0.88
RNF4-221ENST00000513643 DBN1Q16643 649 aa9.53□□□□□ -0.88
RNF4-221ENST00000513643 CAPRIN2Q6IMN6 1127 aaKnown RBP9.53□□□□□ -0.88
RNF4-221ENST00000513643 LRRC8BQ6P9F7 803 aa9.53□□□□□ -0.88
RNF4-221ENST00000513643 PACS1Q6VY07 963 aa9.53□□□□□ -0.88
RNF4-221ENST00000513643 TMEM26Q6ZUK4 368 aa9.53□□□□□ -0.88
RNF4-221ENST00000513643 USP53Q70EK8 1073 aa9.53□□□□□ -0.88
RNF4-221ENST00000513643 NLRP9Q7RTR0 991 aa9.53□□□□□ -0.88
RNF4-221ENST00000513643 ARHGAP22Q7Z5H3 698 aa9.53□□□□□ -0.88
RNF4-221ENST00000513643 PIM3Q86V86 326 aa9.53□□□□□ -0.88
RNF4-221ENST00000513643 SERPINA9Q86WD7 417 aa9.53□□□□□ -0.88
RNF4-221ENST00000513643 CREG2Q8IUH2 290 aa9.53□□□□□ -0.88
RNF4-221ENST00000513643 TRAPPC5Q8IUR0 188 aa9.53□□□□□ -0.88
RNF4-221ENST00000513643 SLCO2A1Q92959 643 aa9.53□□□□□ -0.88
RNF4-221ENST00000513643 MAGOHBQ96A72 148 aaKnown RBP9.53□□□□□ -0.88
RNF4-221ENST00000513643 SH3KBP1Q96B97 665 aa9.53□□□□□ -0.88
RNF4-221ENST00000513643 COPS8Q99627 209 aa9.53□□□□□ -0.88
RNF4-221ENST00000513643 KIFC1Q9BW19 673 aa9.53□□□□□ -0.88
RNF4-221ENST00000513643 AP1M1Q9BXS5 423 aa9.53□□□□□ -0.88
RNF4-221ENST00000513643 TWSG1Q9GZX9 223 aa9.53□□□□□ -0.88
RNF4-221ENST00000513643 EPB41L1Q9H4G0 881 aa9.53□□□□□ -0.88
RNF4-221ENST00000513643 FAM96AQ9H5X1 160 aa9.53□□□□□ -0.88
RNF4-221ENST00000513643 RDH14Q9HBH5 336 aa9.53□□□□□ -0.88
RNF4-221ENST00000513643 POT1Q9NUX5 634 aa9.53□□□□□ -0.88
RNF4-221ENST00000513643 SMARCAL1Q9NZC9 954 aa9.53□□□□□ -0.88
RNF4-221ENST00000513643 SLC2A6Q9UGQ3 507 aa9.53□□□□□ -0.88
RNF4-221ENST00000513643 SATB2Q9UPW6 733 aa9.53□□□□□ -0.88
RNF4-221ENST00000513643 TCAF1Q9Y4C2 921 aa9.53□□□□□ -0.88
RNF4-221ENST00000513643 PCDHGA7Q9Y5G6 932 aa9.53□□□□□ -0.88
RNF4-221ENST00000513643 ATMQ13315 3056 aa9.53□□□□□ -0.88
RNF4-221ENST00000513643 PRAMEF33A0A0G2JMD5 474 aa9.52□□□□□ -0.89
RNF4-221ENST00000513643 CCDC162PA2VCL2 907 aa9.52□□□□□ -0.89
RNF4-221ENST00000513643 OR2AG2A6NM03 316 aa9.52□□□□□ -0.89
RNF4-221ENST00000513643 AP3B1O00203 1094 aa9.52□□□□□ -0.89
RNF4-221ENST00000513643 PGRMC1O00264 195 aaKnown RBP9.52□□□□□ -0.89
RNF4-221ENST00000513643 PLD2O14939 933 aa9.52□□□□□ -0.89
RNF4-221ENST00000513643 HGSO14964 777 aaPredicted RBP9.52□□□□□ -0.89
RNF4-221ENST00000513643 ZNF185O15231 689 aa9.52□□□□□ -0.89
RNF4-221ENST00000513643 ZW10O43264 779 aa9.52□□□□□ -0.89
RNF4-221ENST00000513643 SNX2O60749 519 aa9.52□□□□□ -0.89
RNF4-221ENST00000513643 AP2A2O94973 939 aa9.52□□□□□ -0.89
RNF4-221ENST00000513643 C9P02748 559 aa9.52□□□□□ -0.89
RNF4-221ENST00000513643 ITGA2BP08514 1039 aa9.52□□□□□ -0.89
RNF4-221ENST00000513643 GSTM1P09488 218 aa9.52□□□□□ -0.89
RNF4-221ENST00000513643 MSNP26038 577 aaKnown RBP9.52□□□□□ -0.89
RNF4-221ENST00000513643 ARNTP27540 789 aa9.52□□□□□ -0.89
RNF4-221ENST00000513643 RPL10P27635 214 aaKnown RBP9.52□□□□□ -0.89
RNF4-221ENST00000513643 MAGEA3P43357 314 aa9.52□□□□□ -0.89
RNF4-221ENST00000513643 FNTAP49354 379 aa9.52□□□□□ -0.89
RNF4-221ENST00000513643 GSTM4Q03013 218 aa9.52□□□□□ -0.89
RNF4-221ENST00000513643 GTF2H3Q13889 308 aa9.52□□□□□ -0.89
RNF4-221ENST00000513643 NFE2L1Q14494 772 aa9.52□□□□□ -0.89
RNF4-221ENST00000513643 ITIH4Q14624 930 aa9.52□□□□□ -0.89
RNF4-221ENST00000513643 C16orf72Q14CZ0 275 aa9.52□□□□□ -0.89
RNF4-221ENST00000513643 KCTD19Q17RG1 926 aaPredicted RBP9.52□□□□□ -0.89
RNF4-221ENST00000513643 INSCQ1MX18 579 aa9.52□□□□□ -0.89
RNF4-221ENST00000513643 PLA2G4EQ3MJ16 856 aa9.52□□□□□ -0.89
RNF4-221ENST00000513643 CCDC38Q502W7 563 aa9.52□□□□□ -0.89
RNF4-221ENST00000513643 PCID2Q5JVF3 399 aa9.52□□□□□ -0.89
RNF4-221ENST00000513643 FNBP1LQ5T0N5 605 aa9.52□□□□□ -0.89
RNF4-221ENST00000513643 NKAIN2Q5VXU1 208 aa9.52□□□□□ -0.89
RNF4-221ENST00000513643 TMEM71Q6P5X7 295 aa9.52□□□□□ -0.89
RNF4-221ENST00000513643 RAB11FIP2Q7L804 512 aa9.52□□□□□ -0.89
RNF4-221ENST00000513643 CAND1Q86VP6 1230 aaKnown RBP9.52□□□□□ -0.89
RNF4-221ENST00000513643 RBM12BQ8IXT5 1001 aaKnown RBP9.52□□□□□ -0.89
RNF4-221ENST00000513643 BEND7Q8N7W2 519 aaPredicted RBP9.52□□□□□ -0.89
RNF4-221ENST00000513643 DNAAF3Q8N9W5 541 aa9.52□□□□□ -0.89
RNF4-221ENST00000513643 MCUQ8NE86 351 aa9.52□□□□□ -0.89
RNF4-221ENST00000513643 GDAP1Q8TB36 358 aa9.52□□□□□ -0.89
RNF4-221ENST00000513643 NAT14Q8WUY8 206 aa9.52□□□□□ -0.89
RNF4-221ENST00000513643 ZFPM2Q8WW38 1151 aa9.52□□□□□ -0.89
RNF4-221ENST00000513643 CPT1BQ92523 772 aa9.52□□□□□ -0.89
RNF4-221ENST00000513643 HDAC10Q969S8 669 aa9.52□□□□□ -0.89
RNF4-221ENST00000513643 TTC25Q96NG3 672 aa9.52□□□□□ -0.89
RNF4-221ENST00000513643 NAP1L3Q99457 506 aaPredicted RBP9.52□□□□□ -0.89
RNF4-221ENST00000513643 LDHAL6BQ9BYZ2 381 aaPredicted RBP9.52□□□□□ -0.89
RNF4-221ENST00000513643 FOXP3Q9BZS1 431 aa9.52□□□□□ -0.89
RNF4-221ENST00000513643 IL22Q9GZX6 179 aa9.52□□□□□ -0.89
RNF4-221ENST00000513643 RAB33BQ9H082 229 aa9.52□□□□□ -0.89
RNF4-221ENST00000513643 MRM3Q9HC36 420 aaKnown RBP9.52□□□□□ -0.89
RNF4-221ENST00000513643 CHRAC1Q9NRG0 131 aa9.52□□□□□ -0.89
RNF4-221ENST00000513643 KCNK4Q9NYG8 393 aa9.52□□□□□ -0.89
RNF4-221ENST00000513643 TMEM9Q9P0T7 183 aa9.52□□□□□ -0.89
RNF4-221ENST00000513643 SEMA5BQ9P283 1151 aa9.52□□□□□ -0.89
RNF4-221ENST00000513643 EPHA6Q9UF33 1036 aa9.52□□□□□ -0.89
RNF4-221ENST00000513643 CRLS1Q9UJA2 301 aa9.52□□□□□ -0.89
RNF4-221ENST00000513643 ACSL5Q9ULC5 683 aa9.52□□□□□ -0.89
RNF4-221ENST00000513643 DNAJC16Q9Y2G8 782 aa9.52□□□□□ -0.89
RNF4-221ENST00000513643 AK5Q9Y6K8 562 aa9.52□□□□□ -0.89
RNF4-221ENST00000513643 SLC30A1Q9Y6M5 507 aa9.52□□□□□ -0.89
RNF4-221ENST00000513643 KALRNO60229 2985 aa9.52□□□□□ -0.89
RNF4-221ENST00000513643 CACNA1GO43497 2377 aa9.52□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 52.8 ms