RNA–Protein interactions for RNA: ENST00000508604.5

NUP54-208, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 1,671 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-208ENST00000508604 LCE1BQ5T7P3 118 aa2.41□□□□□ -2.02
NUP54-208ENST00000508604 GPRIN3Q6ZVF9 776 aa2.41□□□□□ -2.02
NUP54-208ENST00000508604 GPALPP1Q8IXQ4 340 aa2.41□□□□□ -2.02
NUP54-208ENST00000508604 Q8N377 158 aa2.41□□□□□ -2.02
NUP54-208ENST00000508604 OR14L1PQ8NHC6 308 aa2.41□□□□□ -2.02
NUP54-208ENST00000508604 SMPDL3BQ92485 455 aa2.41□□□□□ -2.02
NUP54-208ENST00000508604 TRIM63Q969Q1 353 aa2.41□□□□□ -2.02
NUP54-208ENST00000508604 NSL1Q96IY1 281 aa2.41□□□□□ -2.02
NUP54-208ENST00000508604 SOSTQ9BQB4 213 aa2.41□□□□□ -2.02
NUP54-208ENST00000508604 TMEM39BQ9GZU3 492 aa2.41□□□□□ -2.02
NUP54-208ENST00000508604 SLC25A18Q9H1K4 315 aa2.41□□□□□ -2.02
NUP54-208ENST00000508604 CLIP2Q9UDT6 1046 aa2.41□□□□□ -2.02
NUP54-208ENST00000508604 ZDHHC2Q9UIJ5 367 aa2.41□□□□□ -2.02
NUP54-208ENST00000508604 MAU2Q9Y6X3 613 aa2.41□□□□□ -2.02
NUP54-208ENST00000508604 KANSL1LA0AUZ9 987 aa2.4□□□□□ -2.03
NUP54-208ENST00000508604 IFNL4K9M1U5 179 aa2.4□□□□□ -2.03
NUP54-208ENST00000508604 SNAP23O00161 211 aa2.4□□□□□ -2.03
NUP54-208ENST00000508604 DUX4L4P0CJ87 422 aa2.4□□□□□ -2.03
NUP54-208ENST00000508604 CPOXP36551 454 aa2.4□□□□□ -2.03
NUP54-208ENST00000508604 PRCPP42785 496 aa2.4□□□□□ -2.03
NUP54-208ENST00000508604 MMP15P51511 669 aa2.4□□□□□ -2.03
NUP54-208ENST00000508604 CDH11P55287 796 aa2.4□□□□□ -2.03
NUP54-208ENST00000508604 HUNKP57058 714 aa2.4□□□□□ -2.03
NUP54-208ENST00000508604 RPS18P62269 152 aaKnown RBP2.4□□□□□ -2.03
NUP54-208ENST00000508604 NEXNQ0ZGT2 675 aa2.4□□□□□ -2.03
NUP54-208ENST00000508604 COX10Q12887 443 aa2.4□□□□□ -2.03
NUP54-208ENST00000508604 SLC9B1Q4ZJI4 515 aa2.4□□□□□ -2.03
NUP54-208ENST00000508604 LCN10Q6JVE6 187 aa2.4□□□□□ -2.03
NUP54-208ENST00000508604 FAM198BQ6UWH4 519 aa2.4□□□□□ -2.03
NUP54-208ENST00000508604 SEMA4DQ92854 862 aa2.4□□□□□ -2.03
NUP54-208ENST00000508604 CYYR1Q96J86 154 aa2.4□□□□□ -2.03
NUP54-208ENST00000508604 LBHD1Q9BQE6 289 aaPredicted RBP2.4□□□□□ -2.03
NUP54-208ENST00000508604 RPP25Q9BUL9 199 aaKnown RBP2.4□□□□□ -2.03
NUP54-208ENST00000508604 PITPNM3Q9BZ71 974 aa2.4□□□□□ -2.03
NUP54-208ENST00000508604 MAGIXQ9H6Y5 334 aa2.4□□□□□ -2.03
NUP54-208ENST00000508604 OLFML3Q9NRN5 406 aa2.4□□□□□ -2.03
NUP54-208ENST00000508604 KCND2Q9NZV8 630 aa2.4□□□□□ -2.03
NUP54-208ENST00000508604 FAM237AA0A1B0GTK4 181 aa2.39□□□□□ -2.03
NUP54-208ENST00000508604 JRKO75564 520 aa2.39□□□□□ -2.03
NUP54-208ENST00000508604 CKMT2P17540 419 aa2.39□□□□□ -2.03
NUP54-208ENST00000508604 CTCFP49711 727 aaPredicted RBP2.39□□□□□ -2.03
NUP54-208ENST00000508604 CD81P60033 236 aa2.39□□□□□ -2.03
NUP54-208ENST00000508604 OLIG2Q13516 323 aa2.39□□□□□ -2.03
NUP54-208ENST00000508604 PNLIPRP3Q17RR3 467 aa2.39□□□□□ -2.03
NUP54-208ENST00000508604 HLA-BQ31612 363 aa2.39□□□□□ -2.03
NUP54-208ENST00000508604 DNAJC22Q8N4W6 341 aa2.39□□□□□ -2.03
NUP54-208ENST00000508604 GCSAMQ8N6F7 178 aa2.39□□□□□ -2.03
NUP54-208ENST00000508604 ENAHQ8N8S7 591 aaPredicted RBP2.39□□□□□ -2.03
NUP54-208ENST00000508604 HM13Q8TCT9 377 aa2.39□□□□□ -2.03
NUP54-208ENST00000508604 GTF3C6Q969F1 213 aa2.39□□□□□ -2.03
NUP54-208ENST00000508604 NSMCE3Q96MG7 304 aa2.39□□□□□ -2.03
NUP54-208ENST00000508604 USP28Q96RU2 1077 aa2.39□□□□□ -2.03
NUP54-208ENST00000508604 KRT12Q99456 494 aa2.39□□□□□ -2.03
NUP54-208ENST00000508604 ERAP1Q9NZ08 941 aa2.39□□□□□ -2.03
NUP54-208ENST00000508604 NUDT4Q9NZJ9 180 aa2.39□□□□□ -2.03
NUP54-208ENST00000508604 IGLV9-49A0A0B4J1Y8 123 aa2.38□□□□□ -2.03
NUP54-208ENST00000508604 EIF3CLB5ME19 914 aaKnown RBP2.38□□□□□ -2.03
NUP54-208ENST00000508604 WISP2O76076 250 aa2.38□□□□□ -2.03
NUP54-208ENST00000508604 SEC31AO94979 1220 aaKnown RBP2.38□□□□□ -2.03
NUP54-208ENST00000508604 IL7RP16871 459 aa2.38□□□□□ -2.03
NUP54-208ENST00000508604 GPR17Q13304 367 aa2.38□□□□□ -2.03
NUP54-208ENST00000508604 MORC3Q14149 939 aa2.38□□□□□ -2.03
NUP54-208ENST00000508604 E2F5Q15329 346 aa2.38□□□□□ -2.03
NUP54-208ENST00000508604 TAF13Q15543 124 aa2.38□□□□□ -2.03
NUP54-208ENST00000508604 CYP4A22Q5TCH4 519 aa2.38□□□□□ -2.03
NUP54-208ENST00000508604 ATG9AQ7Z3C6 839 aa2.38□□□□□ -2.03
NUP54-208ENST00000508604 SPICE1Q8N0Z3 855 aa2.38□□□□□ -2.03
NUP54-208ENST00000508604 ZNF383Q8NA42 475 aa2.38□□□□□ -2.03
NUP54-208ENST00000508604 PPP1R13BQ96KQ4 1090 aa2.38□□□□□ -2.03
NUP54-208ENST00000508604 FUZQ9BT04 418 aa2.38□□□□□ -2.03
NUP54-208ENST00000508604 BRF2Q9HAW0 419 aa2.38□□□□□ -2.03
NUP54-208ENST00000508604 COPG2Q9UBF2 871 aa2.38□□□□□ -2.03
NUP54-208ENST00000508604 EPHA6Q9UF33 1036 aa2.38□□□□□ -2.03
NUP54-208ENST00000508604 ZNF646O15015 1829 aaPredicted RBP2.38□□□□□ -2.03
NUP54-208ENST00000508604 KLF11O14901 512 aa2.37□□□□□ -2.03
NUP54-208ENST00000508604 ZBTB43O43298 467 aa2.37□□□□□ -2.03
NUP54-208ENST00000508604 MAGEA11P43364 429 aa2.37□□□□□ -2.03
NUP54-208ENST00000508604 DRP2Q13474 957 aa2.37□□□□□ -2.03
NUP54-208ENST00000508604 GPR68Q15743 365 aa2.37□□□□□ -2.03
NUP54-208ENST00000508604 ALG11Q2TAA5 492 aa2.37□□□□□ -2.03
NUP54-208ENST00000508604 RAB6CQ53S08 254 aa2.37□□□□□ -2.03
NUP54-208ENST00000508604 ZNF805Q5CZA5 627 aa2.37□□□□□ -2.03
NUP54-208ENST00000508604 SLC38A9Q8NBW4 561 aa2.37□□□□□ -2.03
NUP54-208ENST00000508604 TBC1D20Q96BZ9 403 aa2.37□□□□□ -2.03
NUP54-208ENST00000508604 SAAL1Q96ER3 474 aa2.37□□□□□ -2.03
NUP54-208ENST00000508604 FUCA2Q9BTY2 467 aa2.37□□□□□ -2.03
NUP54-208ENST00000508604 DGCR6LQ9BY27 220 aa2.37□□□□□ -2.03
NUP54-208ENST00000508604 RAB6CQ9H0N0 254 aa2.37□□□□□ -2.03
NUP54-208ENST00000508604 ITM2CQ9NQX7 267 aa2.37□□□□□ -2.03
NUP54-208ENST00000508604 RNF186Q9NXI6 227 aa2.37□□□□□ -2.03
NUP54-208ENST00000508604 TUBE1Q9UJT0 475 aa2.37□□□□□ -2.03
NUP54-208ENST00000508604 ASTN2O75129 1339 aaPredicted RBP2.37□□□□□ -2.03
NUP54-208ENST00000508604 DNM1LO00429 736 aa2.37□□□□□ -2.03
NUP54-208ENST00000508604 BCL2L11O43521 198 aa2.37□□□□□ -2.03
NUP54-208ENST00000508604 KCNK5O95279 499 aa2.37□□□□□ -2.03
NUP54-208ENST00000508604 IGHV3-13P01766 116 aa2.37□□□□□ -2.03
NUP54-208ENST00000508604 H1F0P07305 194 aaKnown RBP2.37□□□□□ -2.03
NUP54-208ENST00000508604 ITIH1P19827 911 aa2.37□□□□□ -2.03
NUP54-208ENST00000508604 ABCD1P33897 745 aa2.37□□□□□ -2.03
NUP54-208ENST00000508604 PIP4K2AP48426 406 aaPredicted RBP2.37□□□□□ -2.03
Retrieved 100 of 20,778 RNA–protein pairs in 48.3 ms