RNA–Protein interactions for RNA: ENST00000504173.1

NUP54-203, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 314 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-203ENST00000504173 GNPDA1P46926 289 aa9.9□□□□□ -0.82
NUP54-203ENST00000504173 ARCN1P48444 511 aaKnown RBP9.9□□□□□ -0.82
NUP54-203ENST00000504173 ARRB1P49407 418 aaPredicted RBP9.9□□□□□ -0.82
NUP54-203ENST00000504173 SRP54P61011 504 aaKnown RBP9.9□□□□□ -0.82
NUP54-203ENST00000504173 TMEM115Q12893 351 aaPredicted RBP9.9□□□□□ -0.82
NUP54-203ENST00000504173 DBN1Q16643 649 aa9.9□□□□□ -0.82
NUP54-203ENST00000504173 ALG11Q2TAA5 492 aa9.9□□□□□ -0.82
NUP54-203ENST00000504173 HLA-BQ31612 363 aa9.9□□□□□ -0.82
NUP54-203ENST00000504173 KHDC1Q4VXA5 237 aaKnown RBP9.9□□□□□ -0.82
NUP54-203ENST00000504173 PRAMEF14Q5SWL7 426 aa9.9□□□□□ -0.82
NUP54-203ENST00000504173 MRNIPQ6NTE8 343 aa9.9□□□□□ -0.82
NUP54-203ENST00000504173 NEPROQ6NW34 567 aa9.9□□□□□ -0.82
NUP54-203ENST00000504173 CERS6Q6ZMG9 384 aa9.9□□□□□ -0.82
NUP54-203ENST00000504173 LRRC69Q6ZNQ3 347 aa9.9□□□□□ -0.82
NUP54-203ENST00000504173 RD3Q7Z3Z2 195 aa9.9□□□□□ -0.82
NUP54-203ENST00000504173 ADGRG6Q86SQ4 1221 aa9.9□□□□□ -0.82
NUP54-203ENST00000504173 SDCCAG8Q86SQ7 713 aaPredicted RBP9.9□□□□□ -0.82
NUP54-203ENST00000504173 LDB1Q86U70 411 aaPredicted RBP9.9□□□□□ -0.82
NUP54-203ENST00000504173 KCNMB4Q86W47 210 aa9.9□□□□□ -0.82
NUP54-203ENST00000504173 GALNT13Q8IUC8 556 aa9.9□□□□□ -0.82
NUP54-203ENST00000504173 GSPT2Q8IYD1 628 aaKnown RBP9.9□□□□□ -0.82
NUP54-203ENST00000504173 PHACTR4Q8IZ21 702 aa9.9□□□□□ -0.82
NUP54-203ENST00000504173 GALNT15Q8N3T1 639 aa9.9□□□□□ -0.82
NUP54-203ENST00000504173 OR2I1PQ8NGU4 316 aa9.9□□□□□ -0.82
NUP54-203ENST00000504173 GABPB2Q8TAK5 448 aaPredicted RBP9.9□□□□□ -0.82
NUP54-203ENST00000504173 GSDMBQ8TAX9 411 aa9.9□□□□□ -0.82
NUP54-203ENST00000504173 HEXDCQ8WVB3 486 aa9.9□□□□□ -0.82
NUP54-203ENST00000504173 CERS2Q96G23 380 aa9.9□□□□□ -0.82
NUP54-203ENST00000504173 PDXPQ96GD0 296 aa9.9□□□□□ -0.82
NUP54-203ENST00000504173 C9orf72Q96LT7 481 aa9.9□□□□□ -0.82
NUP54-203ENST00000504173 ELF4Q99607 663 aaPredicted RBP9.9□□□□□ -0.82
NUP54-203ENST00000504173 FAM167BQ9BTA0 163 aa9.9□□□□□ -0.82
NUP54-203ENST00000504173 SLC13A1Q9BZW2 595 aa9.9□□□□□ -0.82
NUP54-203ENST00000504173 OR2AG1Q9H205 316 aa9.9□□□□□ -0.82
NUP54-203ENST00000504173 GAREM1Q9H706 876 aa9.9□□□□□ -0.82
NUP54-203ENST00000504173 RMI1Q9H9A7 625 aa9.9□□□□□ -0.82
NUP54-203ENST00000504173 CARS2Q9HA77 564 aaKnown RBP9.9□□□□□ -0.82
NUP54-203ENST00000504173 MRPL40Q9NQ50 206 aaKnown RBP9.9□□□□□ -0.82
NUP54-203ENST00000504173 PPANQ9NQ55 473 aaKnown RBP9.9□□□□□ -0.82
NUP54-203ENST00000504173 MARCH4Q9P2E8 410 aaPredicted RBP9.9□□□□□ -0.82
NUP54-203ENST00000504173 APOBEC3BQ9UH17 382 aaKnown RBP9.9□□□□□ -0.82
NUP54-203ENST00000504173 SUFUQ9UMX1 484 aa9.9□□□□□ -0.82
NUP54-203ENST00000504173 C2CD3Q4AC94 2353 aa9.9□□□□□ -0.82
NUP54-203ENST00000504173 ADAMTS9Q9P2N4 1935 aa9.9□□□□□ -0.83
NUP54-203ENST00000504173 KNL1Q8NG31 2342 aa9.89□□□□□ -0.83
NUP54-203ENST00000504173 A0A1B0GTQ1 180 aa9.89□□□□□ -0.83
NUP54-203ENST00000504173 SCAMP1O15126 338 aa9.89□□□□□ -0.83
NUP54-203ENST00000504173 PFDN6O15212 129 aa9.89□□□□□ -0.83
NUP54-203ENST00000504173 YKT6O15498 198 aa9.89□□□□□ -0.83
NUP54-203ENST00000504173 SLC28A2O43868 658 aa9.89□□□□□ -0.83
NUP54-203ENST00000504173 NUAK1O60285 661 aa9.89□□□□□ -0.83
NUP54-203ENST00000504173 DFNA5O60443 496 aa9.89□□□□□ -0.83
NUP54-203ENST00000504173 DNAJC6O75061 913 aa9.89□□□□□ -0.83
NUP54-203ENST00000504173 NDUFS3O75489 264 aa9.89□□□□□ -0.83
NUP54-203ENST00000504173 CDK14O94921 469 aa9.89□□□□□ -0.83
NUP54-203ENST00000504173 CSF2P04141 144 aa9.89□□□□□ -0.83
NUP54-203ENST00000504173 ERVK-10P10266 1014 aa9.89□□□□□ -0.83
NUP54-203ENST00000504173 GP1BBP13224 206 aa9.89□□□□□ -0.83
NUP54-203ENST00000504173 ZNF8P17098 575 aaPredicted RBP9.89□□□□□ -0.83
NUP54-203ENST00000504173 OGNP20774 298 aaKnown RBP9.89□□□□□ -0.83
NUP54-203ENST00000504173 TNFRSF8P28908 595 aa9.89□□□□□ -0.83
NUP54-203ENST00000504173 SSTR1P30872 391 aa9.89□□□□□ -0.83
NUP54-203ENST00000504173 RXRGP48443 463 aa9.89□□□□□ -0.83
NUP54-203ENST00000504173 TTPAP49638 278 aa9.89□□□□□ -0.83
NUP54-203ENST00000504173 CCT8P50990 548 aa9.89□□□□□ -0.83
NUP54-203ENST00000504173 HK3P52790 923 aa9.89□□□□□ -0.83
NUP54-203ENST00000504173 HNRNPKP61978 463 aaKnown RBP eCLIP9.89□□□□□ -0.837e-6■□□□□ 8.5
NUP54-203ENST00000504173 IL9RQ01113 521 aa9.89□□□□□ -0.83
NUP54-203ENST00000504173 SEMA3AQ14563 771 aa9.89□□□□□ -0.83
NUP54-203ENST00000504173 ITIH4Q14624 930 aa9.89□□□□□ -0.83
NUP54-203ENST00000504173 ERCC6LQ2NKX8 1250 aa9.89□□□□□ -0.83
NUP54-203ENST00000504173 HSP90AA5PQ58FG0 334 aa9.89□□□□□ -0.83
NUP54-203ENST00000504173 KCTD16Q68DU8 428 aa9.89□□□□□ -0.83
NUP54-203ENST00000504173 ZNF470Q6ECI4 717 aa9.89□□□□□ -0.83
NUP54-203ENST00000504173 TRMT10BQ6PF06 316 aaKnown RBP9.89□□□□□ -0.83
NUP54-203ENST00000504173 CRTC3Q6UUV7 619 aa9.89□□□□□ -0.83
NUP54-203ENST00000504173 DET1Q7L5Y6 550 aa9.89□□□□□ -0.83
NUP54-203ENST00000504173 TRAPPC5Q8IUR0 188 aa9.89□□□□□ -0.83
NUP54-203ENST00000504173 NAXDQ8IW45 347 aa9.89□□□□□ -0.83
NUP54-203ENST00000504173 UNC5BQ8IZJ1 945 aa9.89□□□□□ -0.83
NUP54-203ENST00000504173 RBFAQ8N0V3 343 aa9.89□□□□□ -0.83
NUP54-203ENST00000504173 EIF1ADQ8N9N8 165 aaKnown RBP9.89□□□□□ -0.83
NUP54-203ENST00000504173 GPR150Q8NGU9 434 aa9.89□□□□□ -0.83
NUP54-203ENST00000504173 CALML6Q8TD86 181 aa9.89□□□□□ -0.83
NUP54-203ENST00000504173 OR2M4Q96R27 311 aa9.89□□□□□ -0.83
NUP54-203ENST00000504173 BOCQ9BWV1 1114 aa9.89□□□□□ -0.83
NUP54-203ENST00000504173 IL21RQ9HBE5 538 aa9.89□□□□□ -0.83
NUP54-203ENST00000504173 PLAC1Q9HBJ0 212 aa9.89□□□□□ -0.83
NUP54-203ENST00000504173 IARS2Q9NSE4 1012 aaKnown RBP9.89□□□□□ -0.83
NUP54-203ENST00000504173 SPASTQ9UBP0 616 aa9.89□□□□□ -0.83
NUP54-203ENST00000504173 IL17BQ9UHF5 180 aa9.89□□□□□ -0.83
NUP54-203ENST00000504173 ZNHIT2Q9UHR6 403 aa9.89□□□□□ -0.83
NUP54-203ENST00000504173 KLF15Q9UIH9 416 aa9.89□□□□□ -0.83
NUP54-203ENST00000504173 PNMA8BQ9ULN7 279 aaPredicted RBP9.89□□□□□ -0.83
NUP54-203ENST00000504173 DGKBQ9Y6T7 804 aa9.89□□□□□ -0.83
NUP54-203ENST00000504173 USP9YO00507 2555 aaPredicted RBP9.89□□□□□ -0.83
NUP54-203ENST00000504173 TMEM131Q92545 1883 aa9.89□□□□□ -0.83
NUP54-203ENST00000504173 ITPR3Q14573 2671 aa9.89□□□□□ -0.83
NUP54-203ENST00000504173 IGLV3-16A0A075B6K0 115 aa9.88□□□□□ -0.83
NUP54-203ENST00000504173 UBA6A0AVT1 1052 aaPredicted RBP9.88□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms