RNA–Protein interactions for RNA: ENST00000498213.1

USP54-217, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 815 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-217ENST00000498213 DLDP09622 509 aaKnown RBP4.03□□□□□ -1.76
USP54-217ENST00000498213 THEGLP0DJG4 465 aa4.03□□□□□ -1.76
USP54-217ENST00000498213 P4HA1P13674 534 aa4.03□□□□□ -1.76
USP54-217ENST00000498213 WARSP23381 471 aaKnown RBP4.03□□□□□ -1.76
USP54-217ENST00000498213 PCSK6P29122 969 aa4.03□□□□□ -1.76
USP54-217ENST00000498213 NUDT1P36639 197 aa4.03□□□□□ -1.76
USP54-217ENST00000498213 SLC11A2P49281 568 aa4.03□□□□□ -1.76
USP54-217ENST00000498213 ZNF81P51508 661 aa4.03□□□□□ -1.76
USP54-217ENST00000498213 WNT3P56703 355 aa4.03□□□□□ -1.76
USP54-217ENST00000498213 C21orf59P57076 290 aa4.03□□□□□ -1.76
USP54-217ENST00000498213 OSTNP61366 133 aa4.03□□□□□ -1.76
USP54-217ENST00000498213 E2F1Q01094 437 aa4.03□□□□□ -1.76
USP54-217ENST00000498213 RAB32Q13637 225 aa4.03□□□□□ -1.76
USP54-217ENST00000498213 SHBQ15464 509 aa4.03□□□□□ -1.76
USP54-217ENST00000498213 ZC2HC1CQ53FD0 456 aaPredicted RBP4.03□□□□□ -1.76
USP54-217ENST00000498213 MANEAQ5SRI9 462 aa4.03□□□□□ -1.76
USP54-217ENST00000498213 PRAMEF17Q5VTA0 474 aa4.03□□□□□ -1.76
USP54-217ENST00000498213 PAPD7Q5XG87 772 aaKnown RBP4.03□□□□□ -1.76
USP54-217ENST00000498213 ADALQ6DHV7 355 aa4.03□□□□□ -1.76
USP54-217ENST00000498213 JADE1Q6IE81 842 aa4.03□□□□□ -1.76
USP54-217ENST00000498213 CCDC73Q6ZRK6 1079 aa4.03□□□□□ -1.76
USP54-217ENST00000498213 PARS2Q7L3T8 475 aaKnown RBP4.03□□□□□ -1.76
USP54-217ENST00000498213 BHLHA9Q7RTU4 235 aa4.03□□□□□ -1.76
USP54-217ENST00000498213 TIPARPQ7Z3E1 657 aaKnown RBP4.03□□□□□ -1.76
USP54-217ENST00000498213 CACUL1Q86Y37 369 aa4.03□□□□□ -1.76
USP54-217ENST00000498213 WDR49Q8IV35 697 aa4.03□□□□□ -1.76
USP54-217ENST00000498213 SLC34A3Q8N130 599 aa4.03□□□□□ -1.76
USP54-217ENST00000498213 MYCT1Q8N699 235 aa4.03□□□□□ -1.76
USP54-217ENST00000498213 ABHD11Q8NFV4 315 aa4.03□□□□□ -1.76
USP54-217ENST00000498213 SAP25Q8TEE9 199 aa4.03□□□□□ -1.76
USP54-217ENST00000498213 TAF4BQ92750 862 aa4.03□□□□□ -1.76
USP54-217ENST00000498213 DPF1Q92782 380 aa4.03□□□□□ -1.76
USP54-217ENST00000498213 GRAMD1AQ96CP6 724 aa4.03□□□□□ -1.76
USP54-217ENST00000498213 PRR11Q96HE9 360 aaPredicted RBP4.03□□□□□ -1.76
USP54-217ENST00000498213 ANKRD36BP1Q96IX9 119 aa4.03□□□□□ -1.76
USP54-217ENST00000498213 TNIP3Q96KP6 325 aa4.03□□□□□ -1.76
USP54-217ENST00000498213 ACCSQ96QU6 501 aa4.03□□□□□ -1.76
USP54-217ENST00000498213 XPO6Q96QU8 1125 aaKnown RBP4.03□□□□□ -1.76
USP54-217ENST00000498213 CYP2S1Q96SQ9 504 aa4.03□□□□□ -1.76
USP54-217ENST00000498213 GABRG3Q99928 467 aa4.03□□□□□ -1.76
USP54-217ENST00000498213 MMTAG2Q9BU76 263 aaKnown RBP4.03□□□□□ -1.76
USP54-217ENST00000498213 SLC2A11Q9BYW1 496 aa4.03□□□□□ -1.76
USP54-217ENST00000498213 MAGEF1Q9HAY2 307 aa4.03□□□□□ -1.76
USP54-217ENST00000498213 TRPC7Q9HCX4 862 aa4.03□□□□□ -1.76
USP54-217ENST00000498213 DUSP22Q9NRW4 184 aa4.03□□□□□ -1.76
USP54-217ENST00000498213 DDX43Q9NXZ2 648 aaKnown RBP4.03□□□□□ -1.76
USP54-217ENST00000498213 IL37Q9NZH6 218 aa4.03□□□□□ -1.76
USP54-217ENST00000498213 ZIM2Q9NZV7 527 aa4.03□□□□□ -1.76
USP54-217ENST00000498213 DEC1Q9P2X7 70 aa4.03□□□□□ -1.76
USP54-217ENST00000498213 SERGEFQ9UGK8 458 aa4.03□□□□□ -1.76
USP54-217ENST00000498213 KCND3Q9UK17 655 aa4.03□□□□□ -1.76
USP54-217ENST00000498213 SLC27A6Q9Y2P4 619 aa4.03□□□□□ -1.76
USP54-217ENST00000498213 ZSCAN21Q9Y5A6 473 aaPredicted RBP4.03□□□□□ -1.76
USP54-217ENST00000498213 NUP210Q8TEM1 1887 aaPredicted RBP4.03□□□□□ -1.77
USP54-217ENST00000498213 CITO14578 2027 aa4.02□□□□□ -1.77
USP54-217ENST00000498213 LRRK1Q38SD2 2015 aa4.02□□□□□ -1.77
USP54-217ENST00000498213 ACANP16112 2415 aa4.02□□□□□ -1.77
USP54-217ENST00000498213 FRMD3A2A2Y4 597 aa4.02□□□□□ -1.77
USP54-217ENST00000498213 WDR91A4D1P6 747 aa4.02□□□□□ -1.77
USP54-217ENST00000498213 ZNF233A6NK53 670 aa4.02□□□□□ -1.77
USP54-217ENST00000498213 CDRT15L2A8MXV6 281 aa4.02□□□□□ -1.77
USP54-217ENST00000498213 E9PMD0 336 aa4.02□□□□□ -1.77
USP54-217ENST00000498213 BTN3A1O00481 513 aa4.02□□□□□ -1.77
USP54-217ENST00000498213 EIF3DO15371 548 aaKnown RBP eCLIP4.02□□□□□ -1.77
USP54-217ENST00000498213 PHGDHO43175 533 aaKnown RBP4.02□□□□□ -1.77
USP54-217ENST00000498213 CACNG3O60359 315 aa4.02□□□□□ -1.77
USP54-217ENST00000498213 LATS1O95835 1130 aa4.02□□□□□ -1.77
USP54-217ENST00000498213 TNNC2P02585 160 aa4.02□□□□□ -1.77
USP54-217ENST00000498213 RPN1P04843 607 aaKnown RBP4.02□□□□□ -1.77
USP54-217ENST00000498213 KRT18P05783 430 aaKnown RBP4.02□□□□□ -1.77
USP54-217ENST00000498213 MYL1P05976 194 aa4.02□□□□□ -1.77
USP54-217ENST00000498213 ZDHHC11BP0C7U3 371 aa4.02□□□□□ -1.77
USP54-217ENST00000498213 KITP10721 976 aa4.02□□□□□ -1.77
USP54-217ENST00000498213 CD99P14209 185 aa4.02□□□□□ -1.77
USP54-217ENST00000498213 NR1D1P20393 614 aa4.02□□□□□ -1.77
USP54-217ENST00000498213 CERS1P27544 350 aa4.02□□□□□ -1.77
USP54-217ENST00000498213 NTSR1P30989 418 aa4.02□□□□□ -1.77
USP54-217ENST00000498213 CHKAP35790 457 aa4.02□□□□□ -1.77
USP54-217ENST00000498213 ASIC1P78348 528 aa4.02□□□□□ -1.77
USP54-217ENST00000498213 KLRB1Q12918 225 aa4.02□□□□□ -1.77
USP54-217ENST00000498213 SLC13A2Q13183 592 aa4.02□□□□□ -1.77
USP54-217ENST00000498213 MTA1Q13330 715 aa4.02□□□□□ -1.77
USP54-217ENST00000498213 ENPP2Q13822 863 aa4.02□□□□□ -1.77
USP54-217ENST00000498213 STARD3Q14849 445 aa4.02□□□□□ -1.77
USP54-217ENST00000498213 RABEP1Q15276 862 aa4.02□□□□□ -1.77
USP54-217ENST00000498213 ISXQ2M1V0 245 aa4.02□□□□□ -1.77
USP54-217ENST00000498213 L1TD1Q5T7N2 865 aaKnown RBP4.02□□□□□ -1.77
USP54-217ENST00000498213 WSCD1Q658N2 575 aa4.02□□□□□ -1.77
USP54-217ENST00000498213 PPP4R4Q6NUP7 873 aa4.02□□□□□ -1.77
USP54-217ENST00000498213 ZNF782Q6ZMW2 699 aaPredicted RBP4.02□□□□□ -1.77
USP54-217ENST00000498213 RSRC2Q7L4I2 434 aaKnown RBP4.02□□□□□ -1.77
USP54-217ENST00000498213 C14orf80Q86SX3 495 aa4.02□□□□□ -1.77
USP54-217ENST00000498213 UNC93AQ86WB7 457 aa4.02□□□□□ -1.77
USP54-217ENST00000498213 C12orf56Q8IXR9 622 aa4.02□□□□□ -1.77
USP54-217ENST00000498213 CHPFQ8IZ52 775 aa4.02□□□□□ -1.77
USP54-217ENST00000498213 ADGRF2Q8IZF7 708 aa4.02□□□□□ -1.77
USP54-217ENST00000498213 NUP93Q8N1F7 819 aa4.02□□□□□ -1.77
USP54-217ENST00000498213 ARHGAP18Q8N392 663 aa4.02□□□□□ -1.77
USP54-217ENST00000498213 PDCL2Q8N4E4 241 aa4.02□□□□□ -1.77
USP54-217ENST00000498213 ARL14Q8N4G2 192 aa4.02□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms