RNA–Protein interactions for RNA: ENST00000495100.1

GPC1-209, Transcript of glypican 1, humanhuman

TSL 1 (best)

Gene GPC1, Length 3,525 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPC1-209ENST00000495100 HLA-DPA1P20036 260 aa13.29□□□□□ -0.28
GPC1-209ENST00000495100 FPGSQ05932 587 aa13.29□□□□□ -0.28
GPC1-209ENST00000495100 NANOGP8Q6NSW7 305 aa13.29□□□□□ -0.28
GPC1-209ENST00000495100 KCTD8Q6ZWB6 473 aa13.29□□□□□ -0.28
GPC1-209ENST00000495100 LSRQ86X29 649 aaPredicted RBP13.29□□□□□ -0.28
GPC1-209ENST00000495100 ZDHHC13Q8IUH4 622 aa13.29□□□□□ -0.28
GPC1-209ENST00000495100 HMGCLL1Q8TB92 370 aa13.29□□□□□ -0.28
GPC1-209ENST00000495100 ARRDC2Q8TBH0 407 aa13.29□□□□□ -0.28
GPC1-209ENST00000495100 BTBD9Q96Q07 612 aa13.29□□□□□ -0.28
GPC1-209ENST00000495100 OSBPL11Q9BXB4 747 aa13.29□□□□□ -0.28
GPC1-209ENST00000495100 MRPS26Q9BYN8 205 aaKnown RBP13.29□□□□□ -0.28
GPC1-209ENST00000495100 MFSD1Q9H3U5 465 aa13.29□□□□□ -0.28
GPC1-209ENST00000495100 NANOGQ9H9S0 305 aa13.29□□□□□ -0.28
GPC1-209ENST00000495100 TMEM165Q9HC07 324 aa13.29□□□□□ -0.28
GPC1-209ENST00000495100 MAP10Q9P2G4 905 aa13.29□□□□□ -0.28
GPC1-209ENST00000495100 SH3BP1Q9Y3L3 701 aa13.29□□□□□ -0.28
GPC1-209ENST00000495100 ORC6Q9Y5N6 252 aa13.29□□□□□ -0.28
GPC1-209ENST00000495100 ANK1P16157 1881 aa13.28□□□□□ -0.28
GPC1-209ENST00000495100 FER1L6Q2WGJ9 1857 aa13.28□□□□□ -0.28
GPC1-209ENST00000495100 SMIM31A0A1B0GVY4 71 aa13.28□□□□□ -0.28
GPC1-209ENST00000495100 HIST1H2AGP0C0S8 130 aaPredicted RBP13.28□□□□□ -0.28
GPC1-209ENST00000495100 HIST1H2ADP20671 130 aa13.28□□□□□ -0.28
GPC1-209ENST00000495100 SLC6A2P23975 617 aa13.28□□□□□ -0.28
GPC1-209ENST00000495100 SLC5A2P31639 672 aa13.28□□□□□ -0.28
GPC1-209ENST00000495100 MERTKQ12866 999 aa13.28□□□□□ -0.28
GPC1-209ENST00000495100 LRP8Q14114 963 aa13.28□□□□□ -0.28
GPC1-209ENST00000495100 ABRAXAS2Q15018 415 aa13.28□□□□□ -0.28
GPC1-209ENST00000495100 ANKDD1AQ495B1 522 aa13.28□□□□□ -0.28
GPC1-209ENST00000495100 NADSYN1Q6IA69 706 aa13.28□□□□□ -0.28
GPC1-209ENST00000495100 LETMD1Q6P1Q0 360 aa13.28□□□□□ -0.28
GPC1-209ENST00000495100 PRR23BQ6ZRT6 265 aa13.28□□□□□ -0.28
GPC1-209ENST00000495100 TSPAN33Q86UF1 283 aa13.28□□□□□ -0.28
GPC1-209ENST00000495100 ATG16L2Q8NAA4 619 aa13.28□□□□□ -0.28
GPC1-209ENST00000495100 IRGQQ8WZA9 623 aa13.28□□□□□ -0.28
GPC1-209ENST00000495100 GLMNQ92990 594 aa13.28□□□□□ -0.28
GPC1-209ENST00000495100 HIST1H2AHQ96KK5 128 aa13.28□□□□□ -0.28
GPC1-209ENST00000495100 HIST1H2AJQ99878 128 aa13.28□□□□□ -0.28
GPC1-209ENST00000495100 FEM1AQ9BSK4 669 aa13.28□□□□□ -0.28
GPC1-209ENST00000495100 AARSD1Q9BTE6 412 aaKnown RBP13.28□□□□□ -0.28
GPC1-209ENST00000495100 H2AFJQ9BTM1 129 aa13.28□□□□□ -0.28
GPC1-209ENST00000495100 TTPALQ9BTX7 342 aa13.28□□□□□ -0.28
GPC1-209ENST00000495100 XPNPEP2O43895 674 aa13.28□□□□□ -0.28
GPC1-209ENST00000495100 XYLBO75191 536 aa13.28□□□□□ -0.28
GPC1-209ENST00000495100 STATHP02808 62 aa13.28□□□□□ -0.28
GPC1-209ENST00000495100 ATP5BP06576 529 aaKnown RBP13.28□□□□□ -0.28
GPC1-209ENST00000495100 COL6A1P12109 1028 aa13.28□□□□□ -0.28
GPC1-209ENST00000495100 SLC7A1P30825 629 aa13.28□□□□□ -0.28
GPC1-209ENST00000495100 RGS4P49798 205 aa13.28□□□□□ -0.28
GPC1-209ENST00000495100 HK2P52789 917 aa13.28□□□□□ -0.28
GPC1-209ENST00000495100 BCL2L1Q07817 233 aa13.28□□□□□ -0.28
GPC1-209ENST00000495100 STARD3Q14849 445 aa13.28□□□□□ -0.28
GPC1-209ENST00000495100 TGFBIQ15582 683 aa13.28□□□□□ -0.28
GPC1-209ENST00000495100 MEP1AQ16819 746 aa13.28□□□□□ -0.28
GPC1-209ENST00000495100 DDX53Q86TM3 631 aaKnown RBP13.28□□□□□ -0.28
GPC1-209ENST00000495100 LIX1Q8N485 282 aa13.28□□□□□ -0.28
GPC1-209ENST00000495100 MAGED4Q96JG8 741 aa13.28□□□□□ -0.28
GPC1-209ENST00000495100 TSGA13Q96PP4 275 aa13.28□□□□□ -0.28
GPC1-209ENST00000495100 PNPLA3Q9NST1 481 aa13.28□□□□□ -0.28
GPC1-209ENST00000495100 RAB26Q9ULW5 256 aa13.28□□□□□ -0.28
GPC1-209ENST00000495100 RBMX2Q9Y388 322 aaKnown RBP13.28□□□□□ -0.28
GPC1-209ENST00000495100 ARID2Q68CP9 1835 aa13.28□□□□□ -0.28
GPC1-209ENST00000495100 VCANP13611 3396 aa13.27□□□□□ -0.28
GPC1-209ENST00000495100 SLC38A8A6NNN8 435 aa13.27□□□□□ -0.28
GPC1-209ENST00000495100 ZNF487B1APH4 448 aa13.27□□□□□ -0.28
GPC1-209ENST00000495100 ANKRD66B4E2M5 251 aa13.27□□□□□ -0.28
GPC1-209ENST00000495100 COCHO43405 550 aa13.27□□□□□ -0.28
GPC1-209ENST00000495100 CSKP41240 450 aa13.27□□□□□ -0.28
GPC1-209ENST00000495100 RPS9P46781 194 aaKnown RBP13.27□□□□□ -0.28
GPC1-209ENST00000495100 MORN1Q5T089 497 aa13.27□□□□□ -0.28
GPC1-209ENST00000495100 KIAA0408Q6ZU52 694 aa13.27□□□□□ -0.28
GPC1-209ENST00000495100 OR2T12Q8NG77 320 aa13.27□□□□□ -0.28
GPC1-209ENST00000495100 SOCS4Q8WXH5 440 aa13.27□□□□□ -0.28
GPC1-209ENST00000495100 BIRC7Q96CA5 298 aa13.27□□□□□ -0.28
GPC1-209ENST00000495100 RNF38Q9H0F5 515 aa13.27□□□□□ -0.28
GPC1-209ENST00000495100 GNG14A0A1W2PPG7 69 aa13.27□□□□□ -0.28
GPC1-209ENST00000495100 MANSC4A6NHS7 340 aaPredicted RBP13.27□□□□□ -0.28
GPC1-209ENST00000495100 ACOT8O14734 319 aa13.27□□□□□ -0.28
GPC1-209ENST00000495100 OPN1SWP03999 348 aa13.27□□□□□ -0.28
GPC1-209ENST00000495100 IDO1P14902 403 aa13.27□□□□□ -0.28
GPC1-209ENST00000495100 PRDX6P30041 224 aa13.27□□□□□ -0.28
GPC1-209ENST00000495100 IL10RBQ08334 325 aa13.27□□□□□ -0.28
GPC1-209ENST00000495100 TRIP4Q15650 581 aaPredicted RBP13.27□□□□□ -0.28
GPC1-209ENST00000495100 C6orf136Q5SQH8 315 aa13.27□□□□□ -0.28
GPC1-209ENST00000495100 HMBOX1Q6NT76 420 aa13.27□□□□□ -0.28
GPC1-209ENST00000495100 ZCCHC8Q6NZY4 707 aaKnown RBP13.27□□□□□ -0.28
GPC1-209ENST00000495100 ENPP6Q6UWR7 440 aa13.27□□□□□ -0.28
GPC1-209ENST00000495100 FAM86B1Q8N7N1 296 aa13.27□□□□□ -0.28
GPC1-209ENST00000495100 SORCS1Q8WY21 1168 aa13.27□□□□□ -0.28
GPC1-209ENST00000495100 MIR1-1HGQ9H1L0 117 aa13.27□□□□□ -0.28
GPC1-209ENST00000495100 FFAR2O15552 330 aa13.27□□□□□ -0.29
GPC1-209ENST00000495100 PRKD3O94806 890 aa13.27□□□□□ -0.29
GPC1-209ENST00000495100 PABPC4LP0CB38 370 aaKnown RBP13.27□□□□□ -0.29
GPC1-209ENST00000495100 ADRA1AP35348 466 aa13.27□□□□□ -0.29
GPC1-209ENST00000495100 ERVPABLB-1P60509 514 aa13.27□□□□□ -0.29
GPC1-209ENST00000495100 ADAM17P78536 824 aa13.27□□□□□ -0.29
GPC1-209ENST00000495100 DAB2P98082 770 aa13.27□□□□□ -0.29
GPC1-209ENST00000495100 PHKG1Q16816 387 aa13.27□□□□□ -0.29
GPC1-209ENST00000495100 FGD3Q5JSP0 725 aa13.27□□□□□ -0.29
GPC1-209ENST00000495100 AFTPHQ6ULP2 937 aa13.27□□□□□ -0.29
GPC1-209ENST00000495100 HMGN2P46Q86SG4 172 aa13.27□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms