RNA–Protein interactions for RNA: ENST00000486023.1

COL6A1-204, Transcript of collagen type VI alpha 1 chain, humanhuman

TSL 2

Gene COL6A1, Length 968 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1-204ENST00000486023 PCDHB11Q9Y5F2 797 aa17.34■□□□□ 0.37
COL6A1-204ENST00000486023 CFAP20Q9Y6A4 193 aaKnown RBP17.34■□□□□ 0.37
COL6A1-204ENST00000486023 IGSF10Q6WRI0 2623 aa17.33■□□□□ 0.36
COL6A1-204ENST00000486023 PSMD3O43242 534 aa17.33■□□□□ 0.36
COL6A1-204ENST00000486023 LDB2O43679 373 aa17.33■□□□□ 0.36
COL6A1-204ENST00000486023 UBXN7O94888 489 aa17.33■□□□□ 0.36
COL6A1-204ENST00000486023 PRSS56P0CW18 603 aa17.33■□□□□ 0.36
COL6A1-204ENST00000486023 RALBP11234 206 aa17.33■□□□□ 0.36
COL6A1-204ENST00000486023 ITGALP20701 1170 aa17.33■□□□□ 0.36
COL6A1-204ENST00000486023 STIP1P31948 543 aaKnown RBP17.33■□□□□ 0.36
COL6A1-204ENST00000486023 HADHAP40939 763 aa17.33■□□□□ 0.36
COL6A1-204ENST00000486023 CDKN1CP49918 316 aaPredicted RBP17.33■□□□□ 0.36
COL6A1-204ENST00000486023 UCNP55089 124 aa17.33■□□□□ 0.36
COL6A1-204ENST00000486023 XIAPP98170 497 aa17.33■□□□□ 0.36
COL6A1-204ENST00000486023 SRSF6Q13247 344 aaKnown RBP17.33■□□□□ 0.36
COL6A1-204ENST00000486023 MSLNQ13421 630 aaPredicted RBP17.33■□□□□ 0.36
COL6A1-204ENST00000486023 SQSTM1Q13501 440 aa17.33■□□□□ 0.36
COL6A1-204ENST00000486023 CCDC38Q502W7 563 aa17.33■□□□□ 0.36
COL6A1-204ENST00000486023 KCTD11Q693B1 232 aa17.33■□□□□ 0.36
COL6A1-204ENST00000486023 WDR74Q6RFH5 385 aaPredicted RBP17.33■□□□□ 0.36
COL6A1-204ENST00000486023 ABRAXAS1Q6UWZ7 409 aa17.33■□□□□ 0.36
COL6A1-204ENST00000486023 PPP1R21Q6ZMI0 780 aa17.33■□□□□ 0.36
COL6A1-204ENST00000486023 CCDC89Q8N998 374 aa17.33■□□□□ 0.36
COL6A1-204ENST00000486023 AVL9Q8NBF6 648 aa17.33■□□□□ 0.36
COL6A1-204ENST00000486023 OR52K1Q8NGK4 314 aa17.33■□□□□ 0.36
COL6A1-204ENST00000486023 RNF31Q96EP0 1072 aa17.33■□□□□ 0.36
COL6A1-204ENST00000486023 BBC3Q96PG8 261 aaPredicted RBP17.33■□□□□ 0.36
COL6A1-204ENST00000486023 ETNK1Q9HBU6 452 aa17.33■□□□□ 0.36
COL6A1-204ENST00000486023 IMP3Q9NV31 184 aaKnown RBP17.33■□□□□ 0.36
COL6A1-204ENST00000486023 FEZ2Q9UHY8 353 aaPredicted RBP17.33■□□□□ 0.36
COL6A1-204ENST00000486023 AP2A1O95782 977 aa17.32■□□□□ 0.36
COL6A1-204ENST00000486023 CXCR5P32302 372 aa17.32■□□□□ 0.36
COL6A1-204ENST00000486023 SEPHS1P49903 392 aa17.32■□□□□ 0.36
COL6A1-204ENST00000486023 ZNF140P52738 457 aaPredicted RBP17.32■□□□□ 0.36
COL6A1-204ENST00000486023 EPHA4P54764 986 aa17.32■□□□□ 0.36
COL6A1-204ENST00000486023 GFERP55789 205 aa17.32■□□□□ 0.36
COL6A1-204ENST00000486023 CCZ1BP86790 482 aa17.32■□□□□ 0.36
COL6A1-204ENST00000486023 CCZ1P86791 482 aaPredicted RBP17.32■□□□□ 0.36
COL6A1-204ENST00000486023 VAC14Q08AM6 782 aa17.32■□□□□ 0.36
COL6A1-204ENST00000486023 GPR18Q14330 331 aa17.32■□□□□ 0.36
COL6A1-204ENST00000486023 GSE1Q14687 1217 aa17.32■□□□□ 0.36
COL6A1-204ENST00000486023 KCTD19Q17RG1 926 aaPredicted RBP17.32■□□□□ 0.36
COL6A1-204ENST00000486023 VASH2Q86V25 355 aa17.32■□□□□ 0.36
COL6A1-204ENST00000486023 CFAP206Q8IYR0 622 aa17.32■□□□□ 0.36
COL6A1-204ENST00000486023 CCNL2Q96S94 520 aaPredicted RBP17.32■□□□□ 0.36
COL6A1-204ENST00000486023 COPS8Q99627 209 aa17.32■□□□□ 0.36
COL6A1-204ENST00000486023 WWP1Q9H0M0 922 aa17.32■□□□□ 0.36
COL6A1-204ENST00000486023 ARNT2Q9HBZ2 717 aa17.32■□□□□ 0.36
COL6A1-204ENST00000486023 RAB6BQ9NRW1 208 aa17.32■□□□□ 0.36
COL6A1-204ENST00000486023 SMOXQ9NWM0 555 aa17.32■□□□□ 0.36
COL6A1-204ENST00000486023 CACNA1GO43497 2377 aa17.31■□□□□ 0.36
COL6A1-204ENST00000486023 CEP104O60308 925 aa17.31■□□□□ 0.36
COL6A1-204ENST00000486023 KCNJ13O60928 360 aa17.31■□□□□ 0.36
COL6A1-204ENST00000486023 RASSF9O75901 435 aa17.31■□□□□ 0.36
COL6A1-204ENST00000486023 ZSCAN5DPP0CG00 497 aa17.31■□□□□ 0.36
COL6A1-204ENST00000486023 TERF1P54274 439 aa17.31■□□□□ 0.36
COL6A1-204ENST00000486023 OASLQ15646 514 aaKnown RBP17.31■□□□□ 0.36
COL6A1-204ENST00000486023 RPE65Q16518 533 aa17.31■□□□□ 0.36
COL6A1-204ENST00000486023 MANEAQ5SRI9 462 aa17.31■□□□□ 0.36
COL6A1-204ENST00000486023 AGAP9Q5VTM2 703 aa17.31■□□□□ 0.36
COL6A1-204ENST00000486023 ANKS6Q68DC2 871 aa17.31■□□□□ 0.36
COL6A1-204ENST00000486023 IRGCQ6NXR0 463 aa17.31■□□□□ 0.36
COL6A1-204ENST00000486023 GSTA5Q7RTV2 222 aa17.31■□□□□ 0.36
COL6A1-204ENST00000486023 SNX20Q7Z614 316 aa17.31■□□□□ 0.36
COL6A1-204ENST00000486023 LINC00523Q86TU6 105 aa17.31■□□□□ 0.36
COL6A1-204ENST00000486023 PLXDC1Q8IUK5 500 aa17.31■□□□□ 0.36
COL6A1-204ENST00000486023 NXPE1Q8N323 547 aa17.31■□□□□ 0.36
COL6A1-204ENST00000486023 ULK4Q96C45 1275 aa17.31■□□□□ 0.36
COL6A1-204ENST00000486023 ZNF514Q96K75 400 aaPredicted RBP17.31■□□□□ 0.36
COL6A1-204ENST00000486023 SLC40A1Q9NP59 571 aa17.31■□□□□ 0.36
COL6A1-204ENST00000486023 POT1Q9NUX5 634 aa17.31■□□□□ 0.36
COL6A1-204ENST00000486023 PPP2R2CQ9Y2T4 447 aa17.31■□□□□ 0.36
COL6A1-204ENST00000486023 B3GALT1Q9Y5Z6 326 aa17.31■□□□□ 0.36
COL6A1-204ENST00000486023 DNMT3AQ9Y6K1 912 aaPredicted RBP17.31■□□□□ 0.36
COL6A1-204ENST00000486023 MGAT4DA6NG13 374 aa17.3■□□□□ 0.36
COL6A1-204ENST00000486023 LILRA5A6NI73 299 aa17.3■□□□□ 0.36
COL6A1-204ENST00000486023 PRR19A6NJB7 356 aa17.3■□□□□ 0.36
COL6A1-204ENST00000486023 CFAP99D6REC4 459 aa17.3■□□□□ 0.36
COL6A1-204ENST00000486023 CAPN5O15484 640 aaPredicted RBP17.3■□□□□ 0.36
COL6A1-204ENST00000486023 GAS8O95995 478 aa17.3■□□□□ 0.36
COL6A1-204ENST00000486023 FGGP02679 453 aa17.3■□□□□ 0.36
COL6A1-204ENST00000486023 LIPCP11150 499 aa17.3■□□□□ 0.36
COL6A1-204ENST00000486023 ATP1B2P14415 290 aaPredicted RBP17.3■□□□□ 0.36
COL6A1-204ENST00000486023 GRIA1P42261 906 aa17.3■□□□□ 0.36
COL6A1-204ENST00000486023 LEPRP48357 1165 aaKnown RBP17.3■□□□□ 0.36
COL6A1-204ENST00000486023 KRT33BQ14525 404 aa17.3■□□□□ 0.36
COL6A1-204ENST00000486023 PLCL1Q15111 1095 aa17.3■□□□□ 0.36
COL6A1-204ENST00000486023 TAF1BQ53T94 588 aaPredicted RBP17.3■□□□□ 0.36
COL6A1-204ENST00000486023 DCAF12Q5T6F0 453 aa17.3■□□□□ 0.36
COL6A1-204ENST00000486023 KIAA1614Q5VZ46 1190 aa17.3■□□□□ 0.36
COL6A1-204ENST00000486023 WASH2PQ6VEQ5 465 aa17.3■□□□□ 0.36
COL6A1-204ENST00000486023 FAM92BQ6ZTR7 304 aa17.3■□□□□ 0.36
COL6A1-204ENST00000486023 SERPINA9Q86WD7 417 aa17.3■□□□□ 0.36
COL6A1-204ENST00000486023 GPR150Q8NGU9 434 aa17.3■□□□□ 0.36
COL6A1-204ENST00000486023 RSC1A1Q92681 617 aa17.3■□□□□ 0.36
COL6A1-204ENST00000486023 C12orf66Q96MD2 445 aa17.3■□□□□ 0.36
COL6A1-204ENST00000486023 UBL7Q96S82 380 aaPredicted RBP17.3■□□□□ 0.36
COL6A1-204ENST00000486023 INSM2Q96T92 566 aaPredicted RBP17.3■□□□□ 0.36
COL6A1-204ENST00000486023 FRMD8P1Q9BZ68 369 aaPredicted RBP17.3■□□□□ 0.36
COL6A1-204ENST00000486023 WASH6PQ9NQA3 447 aa17.3■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms