RNA–Protein interactions for RNA: ENST00000447578.6

VPS29-202, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 996 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-202ENST00000447578 MDFICQ9P1T7 246 aa4.16□□□□□ -1.74
VPS29-202ENST00000447578 EXO1Q9UQ84 846 aaKnown RBP4.16□□□□□ -1.74
VPS29-202ENST00000447578 KDM3BQ7LBC6 1761 aa4.16□□□□□ -1.74
VPS29-202ENST00000447578 PHRF1Q9P1Y6 1649 aaKnown RBP4.16□□□□□ -1.74
VPS29-202ENST00000447578 KIF1AQ12756 1690 aa4.16□□□□□ -1.74
VPS29-202ENST00000447578 MEGF6O75095 1541 aa4.16□□□□□ -1.74
VPS29-202ENST00000447578 TRBV5-3A0A0A0MS03 114 aa4.15□□□□□ -1.75
VPS29-202ENST00000447578 TRBC2A0A5B9 178 aa4.15□□□□□ -1.75
VPS29-202ENST00000447578 HSPB2A8KAH6 182 aa4.15□□□□□ -1.75
VPS29-202ENST00000447578 AKR1B15C9JRZ8 316 aaPredicted RBP4.15□□□□□ -1.75
VPS29-202ENST00000447578 H3BQ06 376 aaPredicted RBP4.15□□□□□ -1.75
VPS29-202ENST00000447578 JRKO75564 520 aa4.15□□□□□ -1.75
VPS29-202ENST00000447578 HIST1H2ABP04908 130 aa4.15□□□□□ -1.75
VPS29-202ENST00000447578 IGKV5-2P06315 115 aa4.15□□□□□ -1.75
VPS29-202ENST00000447578 TFPIP10646 304 aa4.15□□□□□ -1.75
VPS29-202ENST00000447578 ETFAP13804 333 aa4.15□□□□□ -1.75
VPS29-202ENST00000447578 CTPS1P17812 591 aa4.15□□□□□ -1.75
VPS29-202ENST00000447578 SRD5A1P18405 259 aa4.15□□□□□ -1.75
VPS29-202ENST00000447578 HIST1H2ADP20671 130 aa4.15□□□□□ -1.75
VPS29-202ENST00000447578 ATP5DP30049 168 aa4.15□□□□□ -1.75
VPS29-202ENST00000447578 CDC25AP30304 524 aa4.15□□□□□ -1.75
VPS29-202ENST00000447578 HOXA11P31270 313 aaPredicted RBP4.15□□□□□ -1.75
VPS29-202ENST00000447578 MATR3P43243 847 aaKnown RBP eCLIP4.15□□□□□ -1.75
VPS29-202ENST00000447578 SUOXP51687 545 aa4.15□□□□□ -1.75
VPS29-202ENST00000447578 SLC12A2P55011 1212 aa4.15□□□□□ -1.75
VPS29-202ENST00000447578 P2RX3P56373 397 aa4.15□□□□□ -1.75
VPS29-202ENST00000447578 GCKRQ14397 625 aa4.15□□□□□ -1.75
VPS29-202ENST00000447578 ARHGEF6Q15052 776 aa4.15□□□□□ -1.75
VPS29-202ENST00000447578 PGM5Q15124 567 aa4.15□□□□□ -1.75
VPS29-202ENST00000447578 HSPB2Q16082 182 aa4.15□□□□□ -1.75
VPS29-202ENST00000447578 LETM2Q2VYF4 491 aa4.15□□□□□ -1.75
VPS29-202ENST00000447578 PCGF3Q3KNV8 242 aa4.15□□□□□ -1.75
VPS29-202ENST00000447578 USP41Q3LFD5 358 aa4.15□□□□□ -1.75
VPS29-202ENST00000447578 ZNF805Q5CZA5 627 aa4.15□□□□□ -1.75
VPS29-202ENST00000447578 PRAMEF19Q5SWL8 479 aa4.15□□□□□ -1.75
VPS29-202ENST00000447578 C6orf141Q5SZD1 244 aa4.15□□□□□ -1.75
VPS29-202ENST00000447578 LRIF1Q5T3J3 769 aa4.15□□□□□ -1.75
VPS29-202ENST00000447578 KRT79Q5XKE5 535 aa4.15□□□□□ -1.75
VPS29-202ENST00000447578 SEPT14Q6ZU15 432 aa4.15□□□□□ -1.75
VPS29-202ENST00000447578 HIST3H2AQ7L7L0 130 aa4.15□□□□□ -1.75
VPS29-202ENST00000447578 CCDC91Q7Z6B0 441 aa4.15□□□□□ -1.75
VPS29-202ENST00000447578 SERPINA11Q86U17 422 aa4.15□□□□□ -1.75
VPS29-202ENST00000447578 NOXA1Q86UR1 476 aa4.15□□□□□ -1.75
VPS29-202ENST00000447578 RNF168Q8IYW5 571 aaPredicted RBP4.15□□□□□ -1.75
VPS29-202ENST00000447578 CHCHD4Q8N4Q1 142 aa4.15□□□□□ -1.75
VPS29-202ENST00000447578 OR8K5Q8NH50 307 aa4.15□□□□□ -1.75
VPS29-202ENST00000447578 HUS1BQ8NHY5 278 aa4.15□□□□□ -1.75
VPS29-202ENST00000447578 KIF18AQ8NI77 898 aa4.15□□□□□ -1.75
VPS29-202ENST00000447578 GPT2Q8TD30 523 aa4.15□□□□□ -1.75
VPS29-202ENST00000447578 BCAS4Q8TDM0 211 aa4.15□□□□□ -1.75
VPS29-202ENST00000447578 DEPDC1BQ8WUY9 529 aa4.15□□□□□ -1.75
VPS29-202ENST00000447578 MRPS27Q92552 414 aaKnown RBP4.15□□□□□ -1.75
VPS29-202ENST00000447578 SECISBP2LQ93073 1101 aaKnown RBP4.15□□□□□ -1.75
VPS29-202ENST00000447578 ZNF622Q969S3 477 aaKnown RBP eCLIP4.15□□□□□ -1.75
VPS29-202ENST00000447578 FBXL8Q96CD0 374 aa4.15□□□□□ -1.75
VPS29-202ENST00000447578 TRIM44Q96DX7 344 aaPredicted RBP4.15□□□□□ -1.75
VPS29-202ENST00000447578 ZNF419Q96HQ0 510 aaPredicted RBP4.15□□□□□ -1.75
VPS29-202ENST00000447578 LMLNQ96KR4 655 aa4.15□□□□□ -1.75
VPS29-202ENST00000447578 SLITRK1Q96PX8 696 aa4.15□□□□□ -1.75
VPS29-202ENST00000447578 CITED2Q99967 270 aaPredicted RBP4.15□□□□□ -1.75
VPS29-202ENST00000447578 GPATCH1Q9BRR8 931 aaKnown RBP4.15□□□□□ -1.75
VPS29-202ENST00000447578 TMEM204Q9BSN7 226 aa4.15□□□□□ -1.75
VPS29-202ENST00000447578 MRPL9Q9BYD2 267 aaKnown RBP4.15□□□□□ -1.75
VPS29-202ENST00000447578 BOLA2Q9H3K6 86 aa4.15□□□□□ -1.75
VPS29-202ENST00000447578 SLC28A3Q9HAS3 691 aa4.15□□□□□ -1.75
VPS29-202ENST00000447578 PAPOLBQ9NRJ5 636 aaKnown RBP4.15□□□□□ -1.75
VPS29-202ENST00000447578 NDRG3Q9UGV2 375 aa4.15□□□□□ -1.75
VPS29-202ENST00000447578 PLAGL1Q9UM63 463 aa4.15□□□□□ -1.75
VPS29-202ENST00000447578 LAMP3Q9UQV4 416 aa4.15□□□□□ -1.75
VPS29-202ENST00000447578 RAP2CQ9Y3L5 183 aa4.15□□□□□ -1.75
VPS29-202ENST00000447578 USP16Q9Y5T5 823 aa4.15□□□□□ -1.75
VPS29-202ENST00000447578 TRPM3Q9HCF6 1732 aaPredicted RBP4.15□□□□□ -1.75
VPS29-202ENST00000447578 TNS3Q68CZ2 1445 aa4.14□□□□□ -1.75
VPS29-202ENST00000447578 CAMTA1Q9Y6Y1 1673 aa4.14□□□□□ -1.75
VPS29-202ENST00000447578 TRBV5-7A0A0A0MS05 114 aa4.14□□□□□ -1.75
VPS29-202ENST00000447578 A0A0G2JK05 382 aa4.14□□□□□ -1.75
VPS29-202ENST00000447578 A0A1B0GVM2 712 aa4.14□□□□□ -1.75
VPS29-202ENST00000447578 TCRBV21S2A2A0A5A6 115 aa4.14□□□□□ -1.75
VPS29-202ENST00000447578 C1orf226A1L170 272 aa4.14□□□□□ -1.75
VPS29-202ENST00000447578 TRIM64A6NGJ6 449 aa4.14□□□□□ -1.75
VPS29-202ENST00000447578 TRIM64BA6NI03 449 aa4.14□□□□□ -1.75
VPS29-202ENST00000447578 IFITM10A6NMD0 228 aa4.14□□□□□ -1.75
VPS29-202ENST00000447578 SMTNL1A8MU46 457 aa4.14□□□□□ -1.75
VPS29-202ENST00000447578 RHODO00212 210 aa4.14□□□□□ -1.75
VPS29-202ENST00000447578 HIP1O00291 1037 aa4.14□□□□□ -1.75
VPS29-202ENST00000447578 PSMA7O14818 248 aa4.14□□□□□ -1.75
VPS29-202ENST00000447578 WDR46O15213 610 aaKnown RBP4.14□□□□□ -1.75
VPS29-202ENST00000447578 ZC3H11AO75152 810 aaKnown RBP eCLIP4.14□□□□□ -1.75
VPS29-202ENST00000447578 FDPSP14324 419 aaKnown RBP4.14□□□□□ -1.75
VPS29-202ENST00000447578 MMP9P14780 707 aa4.14□□□□□ -1.75
VPS29-202ENST00000447578 ANXA7P20073 488 aaKnown RBP4.14□□□□□ -1.75
VPS29-202ENST00000447578 CASTP20810 708 aaKnown RBP4.14□□□□□ -1.75
VPS29-202ENST00000447578 AGAP20933 346 aa4.14□□□□□ -1.75
VPS29-202ENST00000447578 GP5P40197 560 aa4.14□□□□□ -1.75
VPS29-202ENST00000447578 KCNJ4P48050 445 aa4.14□□□□□ -1.75
VPS29-202ENST00000447578 CXCR3P49682 368 aa4.14□□□□□ -1.75
VPS29-202ENST00000447578 HSPA2P54652 639 aa4.14□□□□□ -1.75
VPS29-202ENST00000447578 CSE1LP55060 971 aaKnown RBP4.14□□□□□ -1.75
VPS29-202ENST00000447578 DDR1Q08345 913 aa4.14□□□□□ -1.75
VPS29-202ENST00000447578 CCDC173Q0VFZ6 552 aa4.14□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms