RNA–Protein interactions for RNA: ENST00000429895.5

PTPRF-206, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 6,312 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-206ENST00000429895 PLIN3O60664 434 aa15.25■□□□□ 0.03
PTPRF-206ENST00000429895 GOT2P00505 430 aaKnown RBP15.25■□□□□ 0.03
PTPRF-206ENST00000429895 CST3P01034 146 aaPredicted RBP15.25■□□□□ 0.03
PTPRF-206ENST00000429895 DDX6P26196 483 aaKnown RBP eCLIP15.25■□□□□ 0.035e-18■□□□□ 9.4
PTPRF-206ENST00000429895 BCAP31P51572 246 aa15.25■□□□□ 0.03
PTPRF-206ENST00000429895 RAB2AP61019 212 aa15.25■□□□□ 0.03
PTPRF-206ENST00000429895 GNA12Q03113 381 aa15.25■□□□□ 0.03
PTPRF-206ENST00000429895 GBE1Q04446 702 aa15.25■□□□□ 0.03
PTPRF-206ENST00000429895 NPAS4Q8IUM7 802 aa15.25■□□□□ 0.03
PTPRF-206ENST00000429895 VGLL2Q8N8G2 317 aa15.25■□□□□ 0.03
PTPRF-206ENST00000429895 HSD17B14Q9BPX1 270 aa15.25■□□□□ 0.03
PTPRF-206ENST00000429895 HEPHQ9BQS7 1158 aa15.25■□□□□ 0.03
PTPRF-206ENST00000429895 CLK4Q9HAZ1 481 aaKnown RBP15.25■□□□□ 0.03
PTPRF-206ENST00000429895 TMLHEQ9NVH6 421 aa15.25■□□□□ 0.03
PTPRF-206ENST00000429895 EME2A4GXA9 379 aaPredicted RBP15.25■□□□□ 0.03
PTPRF-206ENST00000429895 NADKO95544 446 aaPredicted RBP15.25■□□□□ 0.03
PTPRF-206ENST00000429895 GALK1P51570 392 aa15.25■□□□□ 0.03
PTPRF-206ENST00000429895 LAPTM5Q13571 262 aa15.25■□□□□ 0.03
PTPRF-206ENST00000429895 FAM110CQ1W6H9 321 aa15.25■□□□□ 0.03
PTPRF-206ENST00000429895 C5orf22Q49AR2 442 aa15.25■□□□□ 0.03
PTPRF-206ENST00000429895 ZCCHC12Q6PEW1 402 aa15.25■□□□□ 0.03
PTPRF-206ENST00000429895 CCDC54Q8NEL0 328 aa15.25■□□□□ 0.03
PTPRF-206ENST00000429895 KREMEN1Q96MU8 473 aa15.25■□□□□ 0.03
PTPRF-206ENST00000429895 RTKNQ9BST9 563 aa15.25■□□□□ 0.03
PTPRF-206ENST00000429895 RSL24D1Q9UHA3 163 aaKnown RBP15.25■□□□□ 0.03
PTPRF-206ENST00000429895 MED31Q9Y3C7 131 aa15.25■□□□□ 0.03
PTPRF-206ENST00000429895 GRIN2DO15399 1336 aa15.24■□□□□ 0.03
PTPRF-206ENST00000429895 C9IYK1 514 aa15.24■□□□□ 0.03
PTPRF-206ENST00000429895 ALOX15BO15296 676 aa15.24■□□□□ 0.03
PTPRF-206ENST00000429895 CILPO75339 1184 aa15.24■□□□□ 0.03
PTPRF-206ENST00000429895 POU2F1P14859 743 aa15.24■□□□□ 0.03
PTPRF-206ENST00000429895 AVPR1BP47901 424 aa15.24■□□□□ 0.03
PTPRF-206ENST00000429895 GJA9P57773 515 aa15.24■□□□□ 0.03
PTPRF-206ENST00000429895 PACS2Q86VP3 889 aa15.24■□□□□ 0.03
PTPRF-206ENST00000429895 C11orf24Q96F05 449 aaPredicted RBP15.24■□□□□ 0.03
PTPRF-206ENST00000429895 RNF121Q9H920 327 aa15.24■□□□□ 0.03
PTPRF-206ENST00000429895 VWDEQ8N2E2 1590 aa15.24■□□□□ 0.03
PTPRF-206ENST00000429895 LRRIQ1Q96JM4 1722 aa15.24■□□□□ 0.03
PTPRF-206ENST00000429895 A0A0X1KG70 313 aa15.24■□□□□ 0.03
PTPRF-206ENST00000429895 BBIP1A8MTZ0 92 aa15.24■□□□□ 0.03
PTPRF-206ENST00000429895 FSCN2O14926 492 aa15.24■□□□□ 0.03
PTPRF-206ENST00000429895 ALPPL2P10696 532 aa15.24■□□□□ 0.03
PTPRF-206ENST00000429895 TNFRSF8P28908 595 aa15.24■□□□□ 0.03
PTPRF-206ENST00000429895 CCR10P46092 362 aa15.24■□□□□ 0.03
PTPRF-206ENST00000429895 ASMTP46597 345 aa15.24■□□□□ 0.03
PTPRF-206ENST00000429895 NRLP54845 237 aa15.24■□□□□ 0.03
PTPRF-206ENST00000429895 RFTN2Q52LD8 501 aaPredicted RBP15.24■□□□□ 0.03
PTPRF-206ENST00000429895 DCST1Q5T197 706 aa15.24■□□□□ 0.03
PTPRF-206ENST00000429895 LCLAT1Q6UWP7 414 aa15.24■□□□□ 0.03
PTPRF-206ENST00000429895 ALG2Q9H553 416 aa15.24■□□□□ 0.03
PTPRF-206ENST00000429895 KCNU1A8MYU2 1149 aa15.24■□□□□ 0.03
PTPRF-206ENST00000429895 SAP18O00422 153 aaKnown RBP15.24■□□□□ 0.03
PTPRF-206ENST00000429895 ALOX5P09917 674 aa15.24■□□□□ 0.03
PTPRF-206ENST00000429895 PLA2G16P53816 162 aa15.24■□□□□ 0.03
PTPRF-206ENST00000429895 NR1H2P55055 460 aa15.24■□□□□ 0.03
PTPRF-206ENST00000429895 POU5F1Q01860 360 aaKnown RBP15.24■□□□□ 0.03
PTPRF-206ENST00000429895 CHIT1Q13231 466 aa15.24■□□□□ 0.03
PTPRF-206ENST00000429895 GDF6Q6KF10 455 aaPredicted RBP15.24■□□□□ 0.03
PTPRF-206ENST00000429895 SLCO6A1Q86UG4 719 aa15.24■□□□□ 0.03
PTPRF-206ENST00000429895 GTPBP3Q969Y2 492 aaKnown RBP15.24■□□□□ 0.03
PTPRF-206ENST00000429895 PCED1BQ96HM7 432 aa15.24■□□□□ 0.03
PTPRF-206ENST00000429895 POLMQ9NP87 494 aaPredicted RBP15.24■□□□□ 0.03
PTPRF-206ENST00000429895 USP32Q8NFA0 1604 aa15.24■□□□□ 0.03
PTPRF-206ENST00000429895 BTNL10A8MVZ5 291 aa15.24■□□□□ 0.03
PTPRF-206ENST00000429895 INSIG1O15503 277 aa15.24■□□□□ 0.03
PTPRF-206ENST00000429895 S100A9P06702 114 aaKnown RBP15.24■□□□□ 0.03
PTPRF-206ENST00000429895 ETS2P15036 469 aa15.24■□□□□ 0.03
PTPRF-206ENST00000429895 TLR1Q15399 786 aa15.24■□□□□ 0.03
PTPRF-206ENST00000429895 PUS10Q3MIT2 529 aaKnown RBP15.24■□□□□ 0.03
PTPRF-206ENST00000429895 C12orf66Q96MD2 445 aa15.24■□□□□ 0.03
PTPRF-206ENST00000429895 HOPXQ9BPY8 73 aaPredicted RBP15.24■□□□□ 0.03
PTPRF-206ENST00000429895 CCNB1IP1Q9NPC3 277 aa15.24■□□□□ 0.03
PTPRF-206ENST00000429895 PNO1Q9NRX1 252 aaKnown RBP15.24■□□□□ 0.03
PTPRF-206ENST00000429895 ARL8BQ9NVJ2 186 aa15.24■□□□□ 0.03
PTPRF-206ENST00000429895 NUDT4Q9NZJ9 180 aa15.24■□□□□ 0.03
PTPRF-206ENST00000429895 TBC1D24Q9ULP9 559 aa15.24■□□□□ 0.03
PTPRF-206ENST00000429895 GNEQ9Y223 722 aaKnown RBP15.24■□□□□ 0.03
PTPRF-206ENST00000429895 POP4O95707 220 aaKnown RBP15.24■□□□□ 0.03
PTPRF-206ENST00000429895 SWI5Q1ZZU3 235 aa15.24■□□□□ 0.03
PTPRF-206ENST00000429895 TMEM63BQ5T3F8 832 aa15.24■□□□□ 0.03
PTPRF-206ENST00000429895 SRFBP1Q8NEF9 429 aaKnown RBP15.24■□□□□ 0.03
PTPRF-206ENST00000429895 B3GALT6Q96L58 329 aa15.24■□□□□ 0.03
PTPRF-206ENST00000429895 ZNF460Q14592 562 aa15.23■□□□□ 0.03
PTPRF-206ENST00000429895 UBAP2Q5T6F2 1119 aaKnown RBP15.23■□□□□ 0.03
PTPRF-206ENST00000429895 SATL1Q86VE3 508 aa15.23■□□□□ 0.03
PTPRF-206ENST00000429895 LRRC4CQ9HCJ2 640 aa15.23■□□□□ 0.03
PTPRF-206ENST00000429895 ABCB8Q9NUT2 735 aa15.23■□□□□ 0.03
PTPRF-206ENST00000429895 RGS17Q9UGC6 210 aaPredicted RBP15.23■□□□□ 0.03
PTPRF-206ENST00000429895 DGKBQ9Y6T7 804 aa15.23■□□□□ 0.03
PTPRF-206ENST00000429895 A0A1W2PQ72 361 aa15.23■□□□□ 0.03
PTPRF-206ENST00000429895 SLC38A8A6NNN8 435 aa15.23■□□□□ 0.03
PTPRF-206ENST00000429895 A8MUA0 341 aa15.23■□□□□ 0.03
PTPRF-206ENST00000429895 ARSHQ5FYA8 562 aa15.23■□□□□ 0.03
PTPRF-206ENST00000429895 VWA5B1Q5TIE3 1220 aa15.23■□□□□ 0.03
PTPRF-206ENST00000429895 IRF2BP2Q7Z5L9 587 aa15.23■□□□□ 0.03
PTPRF-206ENST00000429895 FAM47BQ8NA70 645 aa15.23■□□□□ 0.03
PTPRF-206ENST00000429895 CAPNS2Q96L46 248 aa15.23■□□□□ 0.03
PTPRF-206ENST00000429895 C12orf65Q9H3J6 166 aaKnown RBP15.23■□□□□ 0.03
PTPRF-206ENST00000429895 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP15.23■□□□□ 0.03
PTPRF-206ENST00000429895 MRPS17Q9Y2R5 130 aaKnown RBP15.23■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms