RNA–Protein interactions for RNA: ENST00000427112.6

USP40-203, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene USP40, Length 3,744 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-203ENST00000427112 SMAD5Q99717 465 aaKnown RBP8.55□□□□□ -1.04
USP40-203ENST00000427112 KATNAL1Q9BW62 490 aa8.55□□□□□ -1.04
USP40-203ENST00000427112 SLC2A11Q9BYW1 496 aa8.55□□□□□ -1.04
USP40-203ENST00000427112 SLC25A51Q9H1U9 297 aa8.55□□□□□ -1.04
USP40-203ENST00000427112 ABCC13Q9NSE7 274 aa8.55□□□□□ -1.04
USP40-203ENST00000427112 NDUFA13Q9P0J0 144 aa8.55□□□□□ -1.04
USP40-203ENST00000427112 CD84Q9UIB8 345 aa8.55□□□□□ -1.04
USP40-203ENST00000427112 TRMT6Q9UJA5 497 aaKnown RBP8.55□□□□□ -1.04
USP40-203ENST00000427112 SLC8A2Q9UPR5 921 aa8.55□□□□□ -1.04
USP40-203ENST00000427112 CPSF4O95639 269 aaKnown RBP8.55□□□□□ -1.04
USP40-203ENST00000427112 ESRRBO95718 433 aa8.55□□□□□ -1.04
USP40-203ENST00000427112 EPHA2P29317 976 aa8.55□□□□□ -1.04
USP40-203ENST00000427112 SPCS2Q15005 226 aa8.55□□□□□ -1.04
USP40-203ENST00000427112 NKG7Q16617 165 aa8.55□□□□□ -1.04
USP40-203ENST00000427112 SOWAHCQ53LP3 525 aaPredicted RBP8.55□□□□□ -1.04
USP40-203ENST00000427112 SPANXN4Q5MJ08 99 aa8.55□□□□□ -1.04
USP40-203ENST00000427112 ABRAXAS1Q6UWZ7 409 aa8.55□□□□□ -1.04
USP40-203ENST00000427112 ERI1Q8IV48 349 aaKnown RBP8.55□□□□□ -1.04
USP40-203ENST00000427112 CENPSQ8N2Z9 138 aa8.55□□□□□ -1.04
USP40-203ENST00000427112 DDHD1Q8NEL9 900 aa8.55□□□□□ -1.04
USP40-203ENST00000427112 MDGA1Q8NFP4 955 aa8.55□□□□□ -1.04
USP40-203ENST00000427112 OR52J3Q8NH60 311 aa8.55□□□□□ -1.04
USP40-203ENST00000427112 SNX19Q92543 992 aa8.55□□□□□ -1.04
USP40-203ENST00000427112 PLEKHA8Q96JA3 519 aa8.55□□□□□ -1.04
USP40-203ENST00000427112 VAT1Q99536 393 aa8.55□□□□□ -1.04
USP40-203ENST00000427112 DPH2Q9BQC3 489 aaPredicted RBP8.55□□□□□ -1.04
USP40-203ENST00000427112 BBS2Q9BXC9 721 aa8.55□□□□□ -1.04
USP40-203ENST00000427112 ZYG11BQ9C0D3 744 aa8.55□□□□□ -1.04
USP40-203ENST00000427112 TBC1D23Q9NUY8 699 aa8.55□□□□□ -1.04
USP40-203ENST00000427112 GID8Q9NWU2 228 aa8.55□□□□□ -1.04
USP40-203ENST00000427112 VAPAQ9P0L0 249 aa8.55□□□□□ -1.04
USP40-203ENST00000427112 ADGRE2Q9UHX3 823 aa8.55□□□□□ -1.04
USP40-203ENST00000427112 COQ6Q9Y2Z9 468 aa8.55□□□□□ -1.04
USP40-203ENST00000427112 PCDHB3Q9Y5E6 796 aa8.55□□□□□ -1.04
USP40-203ENST00000427112 ZFP37Q9Y6Q3 630 aaPredicted RBP8.55□□□□□ -1.04
USP40-203ENST00000427112 STX7O15400 261 aaKnown RBP8.54□□□□□ -1.04
USP40-203ENST00000427112 STAU1O95793 577 aaKnown RBP8.54□□□□□ -1.04
USP40-203ENST00000427112 GBAP04062 536 aa8.54□□□□□ -1.04
USP40-203ENST00000427112 POU2F1P14859 743 aa8.54□□□□□ -1.04
USP40-203ENST00000427112 HSPA13P48723 471 aa8.54□□□□□ -1.04
USP40-203ENST00000427112 NUDT6P53370 316 aa8.54□□□□□ -1.04
USP40-203ENST00000427112 ERVPABLB-1P60509 514 aa8.54□□□□□ -1.04
USP40-203ENST00000427112 RAD51Q06609 339 aa8.54□□□□□ -1.04
USP40-203ENST00000427112 TAF12Q16514 161 aa8.54□□□□□ -1.04
USP40-203ENST00000427112 CYBRD1Q53TN4 286 aa8.54□□□□□ -1.04
USP40-203ENST00000427112 SLC7A5P1Q8MH63 180 aa8.54□□□□□ -1.04
USP40-203ENST00000427112 CARNMT1Q8N4J0 409 aa8.54□□□□□ -1.04
USP40-203ENST00000427112 CALML6Q8TD86 181 aa8.54□□□□□ -1.04
USP40-203ENST00000427112 C17orf50Q8WW18 174 aa8.54□□□□□ -1.04
USP40-203ENST00000427112 WBP2Q969T9 261 aa8.54□□□□□ -1.04
USP40-203ENST00000427112 TMEM125Q96AQ2 219 aa8.54□□□□□ -1.04
USP40-203ENST00000427112 CENPNQ96H22 339 aaPredicted RBP8.54□□□□□ -1.04
USP40-203ENST00000427112 TPD52L3Q96J77 140 aa8.54□□□□□ -1.04
USP40-203ENST00000427112 EGLN2Q96KS0 407 aa8.54□□□□□ -1.04
USP40-203ENST00000427112 TNKS2Q9H2K2 1166 aa8.54□□□□□ -1.04
USP40-203ENST00000427112 ATP13A1Q9HD20 1204 aa8.54□□□□□ -1.04
USP40-203ENST00000427112 CCM2LQ9NUG4 571 aaPredicted RBP8.54□□□□□ -1.04
USP40-203ENST00000427112 NSMCE4AQ9NXX6 385 aa8.54□□□□□ -1.04
USP40-203ENST00000427112 OAS3Q9Y6K5 1087 aaKnown RBP8.54□□□□□ -1.04
USP40-203ENST00000427112 MIA3Q5JRA6 1907 aa8.54□□□□□ -1.04
USP40-203ENST00000427112 MYLKQ15746 1914 aa8.54□□□□□ -1.04
USP40-203ENST00000427112 FKBP9O95302 570 aa8.54□□□□□ -1.04
USP40-203ENST00000427112 CHEK2O96017 543 aa8.54□□□□□ -1.04
USP40-203ENST00000427112 ATP5BP06576 529 aaKnown RBP8.54□□□□□ -1.04
USP40-203ENST00000427112 C8BP07358 591 aa8.54□□□□□ -1.04
USP40-203ENST00000427112 HSMCR30P0CW71 290 aa8.54□□□□□ -1.04
USP40-203ENST00000427112 HRH2P25021 359 aa8.54□□□□□ -1.04
USP40-203ENST00000427112 MRPS15P82914 257 aaKnown RBP8.54□□□□□ -1.04
USP40-203ENST00000427112 TIAL1Q01085 375 aaKnown RBP eCLIP8.54□□□□□ -1.04
USP40-203ENST00000427112 SLC13A2Q13183 592 aa8.54□□□□□ -1.04
USP40-203ENST00000427112 TCEA2Q15560 299 aa8.54□□□□□ -1.04
USP40-203ENST00000427112 TRIM16LQ309B1 348 aa8.54□□□□□ -1.04
USP40-203ENST00000427112 PTRHD1Q6GMV3 140 aaKnown RBP8.54□□□□□ -1.04
USP40-203ENST00000427112 PPP4R4Q6NUP7 873 aa8.54□□□□□ -1.04
USP40-203ENST00000427112 FKBP9P1Q75LS8 142 aa8.54□□□□□ -1.04
USP40-203ENST00000427112 GET4Q7L5D6 327 aaPredicted RBP8.54□□□□□ -1.04
USP40-203ENST00000427112 DSG4Q86SJ6 1040 aa8.54□□□□□ -1.04
USP40-203ENST00000427112 ZNF554Q86TJ5 538 aa8.54□□□□□ -1.04
USP40-203ENST00000427112 CLIP4Q8N3C7 705 aa8.54□□□□□ -1.04
USP40-203ENST00000427112 FNDC8Q8TC99 324 aa8.54□□□□□ -1.04
USP40-203ENST00000427112 UBXN10Q96LJ8 280 aa8.54□□□□□ -1.04
USP40-203ENST00000427112 SERPINB11Q96P15 392 aa8.54□□□□□ -1.04
USP40-203ENST00000427112 CINPQ9BW66 212 aaPredicted RBP8.54□□□□□ -1.04
USP40-203ENST00000427112 GPR63Q9BZJ6 419 aa8.54□□□□□ -1.04
USP40-203ENST00000427112 MAF1Q9H063 256 aa8.54□□□□□ -1.04
USP40-203ENST00000427112 ABCB10Q9NRK6 738 aa8.54□□□□□ -1.04
USP40-203ENST00000427112 SLC38A7Q9NVC3 462 aa8.54□□□□□ -1.04
USP40-203ENST00000427112 TAS2R13Q9NYV9 303 aa8.54□□□□□ -1.04
USP40-203ENST00000427112 PRELID1Q9Y255 219 aa8.54□□□□□ -1.04
USP40-203ENST00000427112 PCDHGA8Q9Y5G5 932 aa8.54□□□□□ -1.04
USP40-203ENST00000427112 LOC100506127A0A0U1RQW1 187 aa8.54□□□□□ -1.04
USP40-203ENST00000427112 INSIG1O15503 277 aa8.54□□□□□ -1.04
USP40-203ENST00000427112 SERPINF2P08697 491 aa8.54□□□□□ -1.04
USP40-203ENST00000427112 PFKLP17858 780 aa8.54□□□□□ -1.04
USP40-203ENST00000427112 RCVRNP35243 200 aa8.54□□□□□ -1.04
USP40-203ENST00000427112 OPRL1P41146 370 aa8.54□□□□□ -1.04
USP40-203ENST00000427112 LEPRP48357 1165 aaKnown RBP8.54□□□□□ -1.04
USP40-203ENST00000427112 CHRNB3Q05901 458 aa8.54□□□□□ -1.04
USP40-203ENST00000427112 EPS8Q12929 822 aa8.54□□□□□ -1.04
USP40-203ENST00000427112 GPR162Q16538 588 aa8.54□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 54.6 ms