RNA–Protein interactions for RNA: ENST00000414978.5

MCF2-204, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene MCF2, Length 3,813 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-204ENST00000414978 CYP2J2P51589 502 aa2.57□□□□□ -2
MCF2-204ENST00000414978 TRA2BP62995 288 aaKnown RBP2.57□□□□□ -2
MCF2-204ENST00000414978 GPC5P78333 572 aa2.57□□□□□ -2
MCF2-204ENST00000414978 KARSQ15046 597 aaKnown RBP2.57□□□□□ -2
MCF2-204ENST00000414978 GSTA3Q16772 222 aa2.57□□□□□ -2
MCF2-204ENST00000414978 PRAMEF19Q5SWL8 479 aa2.57□□□□□ -2
MCF2-204ENST00000414978 C20orf194Q5TEA3 1177 aa2.57□□□□□ -2
MCF2-204ENST00000414978 ALS2CLQ60I27 953 aa2.57□□□□□ -2
MCF2-204ENST00000414978 C16orf87Q6PH81 154 aa2.57□□□□□ -2
MCF2-204ENST00000414978 TMEM65Q6PI78 240 aa2.57□□□□□ -2
MCF2-204ENST00000414978 FAM83HQ6ZRV2 1179 aaPredicted RBP2.57□□□□□ -2
MCF2-204ENST00000414978 KLBQ86Z14 1044 aa2.57□□□□□ -2
MCF2-204ENST00000414978 FUKQ8N0W3 1084 aa2.57□□□□□ -2
MCF2-204ENST00000414978 CERS5Q8N5B7 392 aa2.57□□□□□ -2
MCF2-204ENST00000414978 DPP10Q8N608 796 aa2.57□□□□□ -2
MCF2-204ENST00000414978 GJC3Q8NFK1 279 aa2.57□□□□□ -2
MCF2-204ENST00000414978 CFAP61Q8NHU2 1237 aa2.57□□□□□ -2
MCF2-204ENST00000414978 PHOSPHO2Q8TCD6 241 aa2.57□□□□□ -2
MCF2-204ENST00000414978 BRSK1Q8TDC3 778 aa2.57□□□□□ -2
MCF2-204ENST00000414978 NOC3LQ8WTT2 800 aaKnown RBP2.57□□□□□ -2
MCF2-204ENST00000414978 RNF139Q8WU17 664 aa2.57□□□□□ -2
MCF2-204ENST00000414978 SIGLEC10Q96LC7 697 aa2.57□□□□□ -2
MCF2-204ENST00000414978 TCEANC2Q96MN5 208 aa2.57□□□□□ -2
MCF2-204ENST00000414978 THUMPD2Q9BTF0 503 aaKnown RBP2.57□□□□□ -2
MCF2-204ENST00000414978 KIFC3Q9BVG8 833 aa2.57□□□□□ -2
MCF2-204ENST00000414978 GTPBP2Q9BX10 602 aaKnown RBP2.57□□□□□ -2
MCF2-204ENST00000414978 UPF3BQ9BZI7 483 aaKnown RBP2.57□□□□□ -2
MCF2-204ENST00000414978 SERHL2Q9H4I8 314 aa2.57□□□□□ -2
MCF2-204ENST00000414978 PALMDQ9NP74 551 aa2.57□□□□□ -2
MCF2-204ENST00000414978 ENTPD7Q9NQZ7 604 aa2.57□□□□□ -2
MCF2-204ENST00000414978 IL17RBQ9NRM6 502 aa2.57□□□□□ -2
MCF2-204ENST00000414978 GIMAP4Q9NUV9 329 aa2.57□□□□□ -2
MCF2-204ENST00000414978 INTS13Q9NVM9 706 aa2.57□□□□□ -2
MCF2-204ENST00000414978 HAO2Q9NYQ3 351 aa2.57□□□□□ -2
MCF2-204ENST00000414978 AMFRQ9UKV5 643 aa2.57□□□□□ -2
MCF2-204ENST00000414978 B3GALT5Q9Y2C3 310 aa2.57□□□□□ -2
MCF2-204ENST00000414978 LCTP09848 1927 aa2.57□□□□□ -2
MCF2-204ENST00000414978 TSC2P49815 1807 aa2.56□□□□□ -2
MCF2-204ENST00000414978 GOLGA6L7A0A1B0GV03 622 aa2.56□□□□□ -2
MCF2-204ENST00000414978 SLC15A5A6NIM6 579 aa2.56□□□□□ -2
MCF2-204ENST00000414978 MBD3L5A6NJ08 208 aaPredicted RBP2.56□□□□□ -2
MCF2-204ENST00000414978 HSPB2A8KAH6 182 aa2.56□□□□□ -2
MCF2-204ENST00000414978 M0QX08 132 aa2.56□□□□□ -2
MCF2-204ENST00000414978 PRYO14603 147 aa2.56□□□□□ -2
MCF2-204ENST00000414978 GMNNO75496 209 aa2.56□□□□□ -2
MCF2-204ENST00000414978 TJP3O95049 919 aa2.56□□□□□ -2
MCF2-204ENST00000414978 PTBP3O95758 552 aaKnown RBP2.56□□□□□ -2
MCF2-204ENST00000414978 TIMP1P01033 207 aa2.56□□□□□ -2
MCF2-204ENST00000414978 CHRM4P08173 479 aa2.56□□□□□ -2
MCF2-204ENST00000414978 H2AFB1P0C5Y9 115 aa2.56□□□□□ -2
MCF2-204ENST00000414978 H2AFB2P0C5Z0 115 aa2.56□□□□□ -2
MCF2-204ENST00000414978 GJA1P17302 382 aa2.56□□□□□ -2
MCF2-204ENST00000414978 CDH2P19022 906 aaPredicted RBP2.56□□□□□ -2
MCF2-204ENST00000414978 TNFRSF1AP19438 455 aa2.56□□□□□ -2
MCF2-204ENST00000414978 SCNN1GP51170 649 aa2.56□□□□□ -2
MCF2-204ENST00000414978 EVCP57679 992 aa2.56□□□□□ -2
MCF2-204ENST00000414978 YPEL5P62699 121 aa2.56□□□□□ -2
MCF2-204ENST00000414978 TIAL1Q01085 375 aaKnown RBP eCLIP2.56□□□□□ -2
MCF2-204ENST00000414978 RUNX1T1Q06455 604 aa2.56□□□□□ -2
MCF2-204ENST00000414978 KCNC3Q14003 757 aa2.56□□□□□ -2
MCF2-204ENST00000414978 SLC39A14Q15043 492 aa2.56□□□□□ -2
MCF2-204ENST00000414978 HSPB2Q16082 182 aa2.56□□□□□ -2
MCF2-204ENST00000414978 SNAPC1Q16533 368 aa2.56□□□□□ -2
MCF2-204ENST00000414978 ST3GAL2Q16842 350 aa2.56□□□□□ -2
MCF2-204ENST00000414978 USH1GQ495M9 461 aa2.56□□□□□ -2
MCF2-204ENST00000414978 C12orf60Q5U649 245 aa2.56□□□□□ -2
MCF2-204ENST00000414978 C1QL3Q5VWW1 255 aa2.56□□□□□ -2
MCF2-204ENST00000414978 ZNF585AQ6P3V2 769 aa2.56□□□□□ -2
MCF2-204ENST00000414978 QSOX2Q6ZRP7 698 aa2.56□□□□□ -2
MCF2-204ENST00000414978 ULK2Q8IYT8 1036 aa2.56□□□□□ -2
MCF2-204ENST00000414978 BEND2Q8NDZ0 799 aa2.56□□□□□ -2
MCF2-204ENST00000414978 CPEB3Q8NE35 698 aaKnown RBP2.56□□□□□ -2
MCF2-204ENST00000414978 SRFBP1Q8NEF9 429 aaKnown RBP2.56□□□□□ -2
MCF2-204ENST00000414978 GLMPQ8WWB7 406 aa2.56□□□□□ -2
MCF2-204ENST00000414978 LPGAT1Q92604 370 aa2.56□□□□□ -2
MCF2-204ENST00000414978 BADQ92934 168 aa2.56□□□□□ -2
MCF2-204ENST00000414978 TMCO6Q96DC7 493 aa2.56□□□□□ -2
MCF2-204ENST00000414978 ZNF668Q96K58 619 aaPredicted RBP2.56□□□□□ -2
MCF2-204ENST00000414978 FNDC11Q9BVV2 318 aa2.56□□□□□ -2
MCF2-204ENST00000414978 CINPQ9BW66 212 aaPredicted RBP2.56□□□□□ -2
MCF2-204ENST00000414978 MTIF3Q9H2K0 278 aaKnown RBP2.56□□□□□ -2
MCF2-204ENST00000414978 SH3BGRL2Q9UJC5 107 aa2.56□□□□□ -2
MCF2-204ENST00000414978 FBXL5Q9UKA1 691 aa2.56□□□□□ -2
MCF2-204ENST00000414978 AGO2Q9UKV8 859 aaKnown RBP2.56□□□□□ -2
MCF2-204ENST00000414978 A0A087WV48 116 aa2.56□□□□□ -2
MCF2-204ENST00000414978 CCDC69A6NI79 296 aa2.56□□□□□ -2
MCF2-204ENST00000414978 C1RP00736 705 aa2.56□□□□□ -2
MCF2-204ENST00000414978 NDUFB7P17568 137 aa2.56□□□□□ -2
MCF2-204ENST00000414978 MAPK3P27361 379 aaPredicted RBP2.56□□□□□ -2
MCF2-204ENST00000414978 PIGAP37287 484 aa2.56□□□□□ -2
MCF2-204ENST00000414978 TKTL1P51854 596 aa2.56□□□□□ -2
MCF2-204ENST00000414978 ZKSCAN8Q15776 578 aaPredicted RBP2.56□□□□□ -2
MCF2-204ENST00000414978 TBRG1Q3YBR2 411 aa2.56□□□□□ -2
MCF2-204ENST00000414978 ADCK2Q7Z695 626 aa2.56□□□□□ -2
MCF2-204ENST00000414978 TFAP2DQ7Z6R9 452 aa2.56□□□□□ -2
MCF2-204ENST00000414978 AMIGO2Q86SJ2 522 aa2.56□□□□□ -2
MCF2-204ENST00000414978 FAM114A1Q8IWE2 563 aa2.56□□□□□ -2
MCF2-204ENST00000414978 ADGRF4Q8IZF3 695 aa2.56□□□□□ -2
MCF2-204ENST00000414978 CADM3Q8N126 398 aa2.56□□□□□ -2
MCF2-204ENST00000414978 KLHL36Q8N4N3 616 aa2.56□□□□□ -2
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms