RNA–Protein interactions for RNA: ENST00000356352.6

UPF2-201, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF2, Length 5,569 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-201ENST00000356352 OR4K2Q8NGD2 314 aa6.4□□□□□ -1.38
UPF2-201ENST00000356352 HAS1Q92839 578 aa6.4□□□□□ -1.38
UPF2-201ENST00000356352 TESCQ96BS2 214 aa6.4□□□□□ -1.38
UPF2-201ENST00000356352 RBM18Q96H35 190 aaKnown RBP6.4□□□□□ -1.38
UPF2-201ENST00000356352 CLPTM1LQ96KA5 538 aa6.4□□□□□ -1.38
UPF2-201ENST00000356352 LMLNQ96KR4 655 aa6.4□□□□□ -1.38
UPF2-201ENST00000356352 CSPG4P5Q96PW8 444 aa6.4□□□□□ -1.38
UPF2-201ENST00000356352 HEPHQ9BQS7 1158 aa6.4□□□□□ -1.38
UPF2-201ENST00000356352 NOL11Q9H8H0 719 aaKnown RBP6.4□□□□□ -1.38
UPF2-201ENST00000356352 S100A14Q9HCY8 104 aa6.4□□□□□ -1.38
UPF2-201ENST00000356352 PAK6Q9NQU5 681 aaPredicted RBP6.4□□□□□ -1.38
UPF2-201ENST00000356352 INTS10Q9NVR2 710 aaKnown RBP6.4□□□□□ -1.38
UPF2-201ENST00000356352 DNAAF2Q9NVR5 837 aaKnown RBP6.4□□□□□ -1.38
UPF2-201ENST00000356352 ETAA1Q9NY74 926 aa6.4□□□□□ -1.38
UPF2-201ENST00000356352 ZNF221Q9UK13 617 aa6.4□□□□□ -1.38
UPF2-201ENST00000356352 PCDHGC3Q9UN70 934 aa6.4□□□□□ -1.38
UPF2-201ENST00000356352 TCAF1Q9Y4C2 921 aa6.4□□□□□ -1.38
UPF2-201ENST00000356352 FADS3Q9Y5Q0 445 aa6.4□□□□□ -1.38
UPF2-201ENST00000356352 FAM240BA0A1B0GVZ2 78 aa6.4□□□□□ -1.38
UPF2-201ENST00000356352 IRF6O14896 467 aa6.4□□□□□ -1.38
UPF2-201ENST00000356352 CILPO75339 1184 aa6.4□□□□□ -1.38
UPF2-201ENST00000356352 EPHX1P07099 455 aa6.4□□□□□ -1.38
UPF2-201ENST00000356352 TSPAN8P19075 237 aa6.4□□□□□ -1.38
UPF2-201ENST00000356352 NDUFS1P28331 727 aa6.4□□□□□ -1.38
UPF2-201ENST00000356352 PBX3P40426 434 aa6.4□□□□□ -1.38
UPF2-201ENST00000356352 ITGA7Q13683 1181 aa6.4□□□□□ -1.38
UPF2-201ENST00000356352 MAPK14Q16539 360 aa6.4□□□□□ -1.38
UPF2-201ENST00000356352 FAM110CQ1W6H9 321 aa6.4□□□□□ -1.38
UPF2-201ENST00000356352 RUNDC3AQ59EK9 446 aa6.4□□□□□ -1.38
UPF2-201ENST00000356352 SLC30A6Q6NXT4 461 aa6.4□□□□□ -1.38
UPF2-201ENST00000356352 AMIGO2Q86SJ2 522 aa6.4□□□□□ -1.38
UPF2-201ENST00000356352 TNS4Q8IZW8 715 aa6.4□□□□□ -1.38
UPF2-201ENST00000356352 FAM13CQ8NE31 585 aa6.4□□□□□ -1.38
UPF2-201ENST00000356352 OR4C6Q8NH72 309 aa6.4□□□□□ -1.38
UPF2-201ENST00000356352 C15orf40Q8WUR7 153 aa6.4□□□□□ -1.38
UPF2-201ENST00000356352 LCN9Q8WX39 176 aa6.4□□□□□ -1.38
UPF2-201ENST00000356352 KCTD15Q96SI1 283 aaPredicted RBP6.4□□□□□ -1.38
UPF2-201ENST00000356352 ACBD6Q9BR61 282 aa6.4□□□□□ -1.38
UPF2-201ENST00000356352 LGR4Q9BXB1 951 aa6.4□□□□□ -1.38
UPF2-201ENST00000356352 DCLK1O15075 740 aa6.4□□□□□ -1.39
UPF2-201ENST00000356352 AKAP8O43823 692 aaKnown RBP6.4□□□□□ -1.39
UPF2-201ENST00000356352 TRMUO75648 421 aaKnown RBP6.4□□□□□ -1.39
UPF2-201ENST00000356352 PIRTP0C851 137 aa6.4□□□□□ -1.39
UPF2-201ENST00000356352 RPIAP49247 311 aa6.4□□□□□ -1.39
UPF2-201ENST00000356352 CASP5P51878 434 aa6.4□□□□□ -1.39
UPF2-201ENST00000356352 CAP1Q01518 475 aa6.4□□□□□ -1.39
UPF2-201ENST00000356352 SCN1BQ07699 218 aa6.4□□□□□ -1.39
UPF2-201ENST00000356352 GRSF1Q12849 480 aaKnown RBP eCLIP6.4□□□□□ -1.39
UPF2-201ENST00000356352 PTP4A2Q12974 167 aa6.4□□□□□ -1.39
UPF2-201ENST00000356352 SLC1A5Q15758 541 aa6.4□□□□□ -1.39
UPF2-201ENST00000356352 RASGEF1CQ8N431 466 aa6.4□□□□□ -1.39
UPF2-201ENST00000356352 OR14C36Q8NHC7 312 aa6.4□□□□□ -1.39
UPF2-201ENST00000356352 DNAJA4Q8WW22 397 aaPredicted RBP6.4□□□□□ -1.39
UPF2-201ENST00000356352 XAGE5Q8WWM1 108 aa6.4□□□□□ -1.39
UPF2-201ENST00000356352 SLC22A18Q96BI1 424 aa6.4□□□□□ -1.39
UPF2-201ENST00000356352 SCGB3A2Q96PL1 93 aa6.4□□□□□ -1.39
UPF2-201ENST00000356352 NPAS2Q99743 824 aa6.4□□□□□ -1.39
UPF2-201ENST00000356352 IPPKQ9H8X2 491 aa6.4□□□□□ -1.39
UPF2-201ENST00000356352 EIF2B3Q9NR50 452 aaKnown RBP6.4□□□□□ -1.39
UPF2-201ENST00000356352 PNPOQ9NVS9 261 aa6.4□□□□□ -1.39
UPF2-201ENST00000356352 SMPD3Q9NY59 655 aaPredicted RBP6.4□□□□□ -1.39
UPF2-201ENST00000356352 MRPL42Q9Y6G3 142 aaKnown RBP6.4□□□□□ -1.39
UPF2-201ENST00000356352 ANXA2P2A6NMY6 339 aa6.4□□□□□ -1.39
UPF2-201ENST00000356352 MATN3O15232 486 aa6.4□□□□□ -1.39
UPF2-201ENST00000356352 CCL16O15467 120 aa6.4□□□□□ -1.39
UPF2-201ENST00000356352 INSIG1O15503 277 aa6.4□□□□□ -1.39
UPF2-201ENST00000356352 NPHS1O60500 1241 aa6.4□□□□□ -1.39
UPF2-201ENST00000356352 LYPLA1O75608 230 aaPredicted RBP6.4□□□□□ -1.39
UPF2-201ENST00000356352 AP2A2O94973 939 aa6.4□□□□□ -1.39
UPF2-201ENST00000356352 ESR1P03372 595 aa6.4□□□□□ -1.39
UPF2-201ENST00000356352 CYP17A1P05093 508 aa6.4□□□□□ -1.39
UPF2-201ENST00000356352 UGT2B4P06133 528 aa6.4□□□□□ -1.39
UPF2-201ENST00000356352 ANXA2P07355 339 aaKnown RBP6.4□□□□□ -1.39
UPF2-201ENST00000356352 GNSP15586 552 aa6.4□□□□□ -1.39
UPF2-201ENST00000356352 ALAS2P22557 587 aa6.4□□□□□ -1.39
UPF2-201ENST00000356352 EIF2S3P41091 472 aaKnown RBP6.4□□□□□ -1.39
UPF2-201ENST00000356352 ARCN1P48444 511 aaKnown RBP6.4□□□□□ -1.39
UPF2-201ENST00000356352 NRG3P56975 720 aa6.4□□□□□ -1.39
UPF2-201ENST00000356352 CLCQ05315 142 aa6.4□□□□□ -1.39
UPF2-201ENST00000356352 IL10RBQ08334 325 aa6.4□□□□□ -1.39
UPF2-201ENST00000356352 DUSP4Q13115 394 aa6.4□□□□□ -1.39
UPF2-201ENST00000356352 KLF10Q13118 480 aa6.4□□□□□ -1.39
UPF2-201ENST00000356352 E2F2Q14209 437 aa6.4□□□□□ -1.39
UPF2-201ENST00000356352 TAF1AQ15573 450 aaPredicted RBP6.4□□□□□ -1.39
UPF2-201ENST00000356352 DLG2Q15700 870 aa6.4□□□□□ -1.39
UPF2-201ENST00000356352 REP15Q6BDI9 236 aa6.4□□□□□ -1.39
UPF2-201ENST00000356352 PYHIN1Q6K0P9 492 aa6.4□□□□□ -1.39
UPF2-201ENST00000356352 CXorf57Q6NSI4 855 aaKnown RBP6.4□□□□□ -1.39
UPF2-201ENST00000356352 RHBDF2Q6PJF5 856 aa6.4□□□□□ -1.39
UPF2-201ENST00000356352 SAPCD2Q86UD0 394 aa6.4□□□□□ -1.39
UPF2-201ENST00000356352 LAPTM4BQ86VI4 370 aa6.4□□□□□ -1.39
UPF2-201ENST00000356352 NPAS4Q8IUM7 802 aa6.4□□□□□ -1.39
UPF2-201ENST00000356352 NRSN1Q8IZ57 195 aa6.4□□□□□ -1.39
UPF2-201ENST00000356352 NAT16Q8N8M0 369 aa6.4□□□□□ -1.39
UPF2-201ENST00000356352 CHST4Q8NCG5 386 aa6.4□□□□□ -1.39
UPF2-201ENST00000356352 OR5B17Q8NGF7 314 aa6.4□□□□□ -1.39
UPF2-201ENST00000356352 GIPC3Q8TF64 312 aa6.4□□□□□ -1.39
UPF2-201ENST00000356352 UPF1Q92900 1129 aaKnown RBP eCLIP6.4□□□□□ -1.398e-7■□□□□ 9.6
UPF2-201ENST00000356352 CPNE2Q96FN4 548 aaPredicted RBP6.4□□□□□ -1.39
UPF2-201ENST00000356352 ZNF514Q96K75 400 aaPredicted RBP6.4□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms