RNA–Protein interactions for RNA: ENST00000351842.8

USP4-202, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 1 (best) BASIC

Gene USP4, Length 3,222 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-202ENST00000351842 HGSO14964 777 aaPredicted RBP9.08□□□□□ -0.96
USP4-202ENST00000351842 POP7O75817 140 aaKnown RBP9.08□□□□□ -0.96
USP4-202ENST00000351842 FUCA1P04066 466 aa9.08□□□□□ -0.96
USP4-202ENST00000351842 ATP1B2P14415 290 aaPredicted RBP9.08□□□□□ -0.96
USP4-202ENST00000351842 HTR1BP28222 390 aa9.08□□□□□ -0.96
USP4-202ENST00000351842 ACTR1BP42025 376 aa9.08□□□□□ -0.96
USP4-202ENST00000351842 ACTR1AP61163 376 aa9.08□□□□□ -0.96
USP4-202ENST00000351842 KRT33BQ14525 404 aa9.08□□□□□ -0.96
USP4-202ENST00000351842 AARS2Q5JTZ9 985 aaKnown RBP9.08□□□□□ -0.96
USP4-202ENST00000351842 CTSL3PQ5NE16 218 aa9.08□□□□□ -0.96
USP4-202ENST00000351842 ZCCHC23Q6ZST2 131 aa9.08□□□□□ -0.96
USP4-202ENST00000351842 CDHR3Q6ZTQ4 885 aa9.08□□□□□ -0.96
USP4-202ENST00000351842 USP30Q70CQ3 517 aa9.08□□□□□ -0.96
USP4-202ENST00000351842 LPCAT2Q7L5N7 544 aa9.08□□□□□ -0.96
USP4-202ENST00000351842 TAOK1Q7L7X3 1001 aa9.08□□□□□ -0.96
USP4-202ENST00000351842 TBC1D1Q86TI0 1168 aaPredicted RBP9.08□□□□□ -0.96
USP4-202ENST00000351842 MYLK4Q86YV6 388 aaPredicted RBP9.08□□□□□ -0.96
USP4-202ENST00000351842 VRK3Q8IV63 474 aa9.08□□□□□ -0.96
USP4-202ENST00000351842 EEF1AKMT1Q8WVE0 214 aa9.08□□□□□ -0.96
USP4-202ENST00000351842 NXNL1Q96CM4 212 aa9.08□□□□□ -0.96
USP4-202ENST00000351842 LINGO1Q96FE5 620 aa9.08□□□□□ -0.96
USP4-202ENST00000351842 RANBP9Q96S59 729 aa9.08□□□□□ -0.96
USP4-202ENST00000351842 APOOQ9BUR5 198 aa9.08□□□□□ -0.96
USP4-202ENST00000351842 USP36Q9P275 1121 aaKnown RBP9.08□□□□□ -0.96
USP4-202ENST00000351842 SLC17A7Q9P2U7 560 aa9.08□□□□□ -0.96
USP4-202ENST00000351842 RAPGEFL1Q9UHV5 662 aa9.08□□□□□ -0.96
USP4-202ENST00000351842 FZD4Q9ULV1 537 aa9.08□□□□□ -0.96
USP4-202ENST00000351842 SUFUQ9UMX1 484 aa9.08□□□□□ -0.96
USP4-202ENST00000351842 TSPAN11A1L157 253 aa9.07□□□□□ -0.96
USP4-202ENST00000351842 OPA1O60313 960 aa9.07□□□□□ -0.96
USP4-202ENST00000351842 VPS26AO75436 327 aa9.07□□□□□ -0.96
USP4-202ENST00000351842 PAPSS2O95340 614 aaPredicted RBP9.07□□□□□ -0.96
USP4-202ENST00000351842 NUDT17P0C025 328 aa9.07□□□□□ -0.96
USP4-202ENST00000351842 CTSEP14091 401 aa9.07□□□□□ -0.96
USP4-202ENST00000351842 LIMK2P53671 638 aa9.07□□□□□ -0.96
USP4-202ENST00000351842 ZKSCAN8Q15776 578 aaPredicted RBP9.07□□□□□ -0.96
USP4-202ENST00000351842 TMEM259Q4ZIN3 620 aa9.07□□□□□ -0.96
USP4-202ENST00000351842 EXOC3L1Q86VI1 746 aa9.07□□□□□ -0.96
USP4-202ENST00000351842 TRAM1L1Q8N609 369 aa9.07□□□□□ -0.96
USP4-202ENST00000351842 KLHDC7BQ96G42 594 aa9.07□□□□□ -0.96
USP4-202ENST00000351842 TSNARE1Q96NA8 513 aa9.07□□□□□ -0.96
USP4-202ENST00000351842 C1QTNF2Q9BXJ5 285 aa9.07□□□□□ -0.96
USP4-202ENST00000351842 SGK2Q9HBY8 427 aa9.07□□□□□ -0.96
USP4-202ENST00000351842 WDR70Q9NW82 654 aa9.07□□□□□ -0.96
USP4-202ENST00000351842 ZDHHC3Q9NYG2 299 aa9.07□□□□□ -0.96
USP4-202ENST00000351842 TAS2R13Q9NYV9 303 aa9.07□□□□□ -0.96
USP4-202ENST00000351842 TMEM120BA0PK00 339 aa9.07□□□□□ -0.96
USP4-202ENST00000351842 NPEPPSL1A6NEC2 478 aa9.07□□□□□ -0.96
USP4-202ENST00000351842 C1QAP02745 245 aa9.07□□□□□ -0.96
USP4-202ENST00000351842 RPA3P35244 121 aaPredicted RBP9.07□□□□□ -0.96
USP4-202ENST00000351842 PPARGP37231 505 aaPredicted RBP9.07□□□□□ -0.96
USP4-202ENST00000351842 NSG1P42857 185 aa9.07□□□□□ -0.96
USP4-202ENST00000351842 RPS9P46781 194 aaKnown RBP9.07□□□□□ -0.96
USP4-202ENST00000351842 CLCN5P51795 746 aa9.07□□□□□ -0.96
USP4-202ENST00000351842 HSF5Q4G112 596 aaPredicted RBP9.07□□□□□ -0.96
USP4-202ENST00000351842 TMEM52BQ4KMG9 183 aa9.07□□□□□ -0.96
USP4-202ENST00000351842 TAF1BQ53T94 588 aaPredicted RBP9.07□□□□□ -0.96
USP4-202ENST00000351842 ACSBG2Q5FVE4 666 aa9.07□□□□□ -0.96
USP4-202ENST00000351842 KIAA1161Q6NSJ0 714 aa9.07□□□□□ -0.96
USP4-202ENST00000351842 GALNT13Q8IUC8 556 aa9.07□□□□□ -0.96
USP4-202ENST00000351842 KLHDC8BQ8IXV7 354 aa9.07□□□□□ -0.96
USP4-202ENST00000351842 MAML2Q8IZL2 1156 aaPredicted RBP9.07□□□□□ -0.96
USP4-202ENST00000351842 TP53I13Q8NBR0 393 aaPredicted RBP9.07□□□□□ -0.96
USP4-202ENST00000351842 OR1E3Q8WZA6 343 aa9.07□□□□□ -0.96
USP4-202ENST00000351842 BIRC8Q96P09 236 aa9.07□□□□□ -0.96
USP4-202ENST00000351842 PLEKHG4BQ96PX9 1271 aa9.07□□□□□ -0.96
USP4-202ENST00000351842 ACAT2Q9BWD1 397 aa9.07□□□□□ -0.96
USP4-202ENST00000351842 PREBQ9HCU5 417 aa9.07□□□□□ -0.96
USP4-202ENST00000351842 C11orf16Q9NQ32 467 aa9.07□□□□□ -0.96
USP4-202ENST00000351842 CNOT6Q9ULM6 557 aaKnown RBP9.07□□□□□ -0.96
USP4-202ENST00000351842 PNMA8BQ9ULN7 279 aaPredicted RBP9.07□□□□□ -0.96
USP4-202ENST00000351842 SCML1Q9UN30 329 aa9.07□□□□□ -0.96
USP4-202ENST00000351842 CNTRLQ7Z7A1 2325 aa9.07□□□□□ -0.96
USP4-202ENST00000351842 RALGAPA1Q6GYQ0 2036 aa9.07□□□□□ -0.96
USP4-202ENST00000351842 B4DGG1 531 aa9.07□□□□□ -0.96
USP4-202ENST00000351842 GRID2O43424 1007 aa9.07□□□□□ -0.96
USP4-202ENST00000351842 ZBTB14O43829 449 aa9.07□□□□□ -0.96
USP4-202ENST00000351842 ABHD2P08910 425 aa9.07□□□□□ -0.96
USP4-202ENST00000351842 OR56A5P0C7T3 313 aa9.07□□□□□ -0.96
USP4-202ENST00000351842 CCR7P32248 378 aa9.07□□□□□ -0.96
USP4-202ENST00000351842 GRTP1Q5TC63 336 aa9.07□□□□□ -0.96
USP4-202ENST00000351842 LYSMD4Q5XG99 296 aa9.07□□□□□ -0.96
USP4-202ENST00000351842 CAMKK1Q8N5S9 505 aa9.07□□□□□ -0.96
USP4-202ENST00000351842 TMEM159Q96B96 161 aa9.07□□□□□ -0.96
USP4-202ENST00000351842 EGFL8Q99944 293 aa9.07□□□□□ -0.96
USP4-202ENST00000351842 GULP1Q9UBP9 304 aa9.07□□□□□ -0.96
USP4-202ENST00000351842 KLQ9UEF7 1012 aa9.07□□□□□ -0.96
USP4-202ENST00000351842 PPIL1Q9Y3C6 166 aa9.07□□□□□ -0.96
USP4-202ENST00000351842 CDC7O00311 574 aa9.06□□□□□ -0.96
USP4-202ENST00000351842 MAPK9P45984 424 aa9.06□□□□□ -0.96
USP4-202ENST00000351842 CLCNKAP51800 687 aa9.06□□□□□ -0.96
USP4-202ENST00000351842 C21orf59P57076 290 aa9.06□□□□□ -0.96
USP4-202ENST00000351842 ADGRD1Q6QNK2 874 aa9.06□□□□□ -0.96
USP4-202ENST00000351842 TMEM207Q6UWW9 146 aa9.06□□□□□ -0.96
USP4-202ENST00000351842 GCNT7Q6ZNI0 430 aa9.06□□□□□ -0.96
USP4-202ENST00000351842 TAF8Q7Z7C8 310 aa9.06□□□□□ -0.96
USP4-202ENST00000351842 ADGRG6Q86SQ4 1221 aa9.06□□□□□ -0.96
USP4-202ENST00000351842 SLC22A18ASQ8N1D0 253 aa9.06□□□□□ -0.96
USP4-202ENST00000351842 GIMAP7Q8NHV1 300 aa9.06□□□□□ -0.96
USP4-202ENST00000351842 PPP1R14CQ8TAE6 165 aa9.06□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 39.4 ms