RNA–Protein interactions for RNA: ENST00000341423.9

HMGB1-203, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGB1, Length 5,485 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-203ENST00000341423 GRIN2DO15399 1336 aa8.3□□□□□ -1.08
HMGB1-203ENST00000341423 OR6C74A6NCV1 312 aa8.3□□□□□ -1.08
HMGB1-203ENST00000341423 ERI2A8K979 691 aaKnown RBP8.3□□□□□ -1.08
HMGB1-203ENST00000341423 GSTM1P09488 218 aa8.3□□□□□ -1.08
HMGB1-203ENST00000341423 CCNB1P14635 433 aa8.3□□□□□ -1.08
HMGB1-203ENST00000341423 HYAL2Q12891 473 aa8.3□□□□□ -1.08
HMGB1-203ENST00000341423 STX5Q13190 355 aa8.3□□□□□ -1.08
HMGB1-203ENST00000341423 XKR6Q5GH73 641 aa8.3□□□□□ -1.08
HMGB1-203ENST00000341423 RAET1LQ5VY80 246 aa8.3□□□□□ -1.08
HMGB1-203ENST00000341423 MOSPD2Q8NHP6 518 aa8.3□□□□□ -1.08
HMGB1-203ENST00000341423 SHKBP1Q8TBC3 707 aa8.3□□□□□ -1.08
HMGB1-203ENST00000341423 ADAMTS15Q8TE58 950 aa8.3□□□□□ -1.08
HMGB1-203ENST00000341423 THTPAQ9BU02 230 aa8.3□□□□□ -1.08
HMGB1-203ENST00000341423 TMCC3Q9ULS5 477 aa8.3□□□□□ -1.08
HMGB1-203ENST00000341423 DCLK1O15075 740 aa8.3□□□□□ -1.08
HMGB1-203ENST00000341423 TMCC2O75069 709 aa8.3□□□□□ -1.08
HMGB1-203ENST00000341423 NDUFA10O95299 355 aa8.3□□□□□ -1.08
HMGB1-203ENST00000341423 LEPRP48357 1165 aaKnown RBP8.3□□□□□ -1.08
HMGB1-203ENST00000341423 ARSEP51690 589 aa8.3□□□□□ -1.08
HMGB1-203ENST00000341423 BLMHQ13867 455 aa8.3□□□□□ -1.08
HMGB1-203ENST00000341423 SLC35G1Q2M3R5 365 aa8.3□□□□□ -1.08
HMGB1-203ENST00000341423 C15orf59Q2T9L4 293 aaPredicted RBP8.3□□□□□ -1.08
HMGB1-203ENST00000341423 USP30Q70CQ3 517 aa8.3□□□□□ -1.08
HMGB1-203ENST00000341423 ABCB10Q9NRK6 738 aa8.3□□□□□ -1.08
HMGB1-203ENST00000341423 MAN1B1Q9UKM7 699 aa8.3□□□□□ -1.08
HMGB1-203ENST00000341423 TLR6Q9Y2C9 796 aa8.3□□□□□ -1.08
HMGB1-203ENST00000341423 GMFGO60234 142 aa8.3□□□□□ -1.08
HMGB1-203ENST00000341423 TBX18O95935 607 aa8.3□□□□□ -1.08
HMGB1-203ENST00000341423 CYP1A2P05177 515 aa8.3□□□□□ -1.08
HMGB1-203ENST00000341423 NR2C2P49116 596 aa8.3□□□□□ -1.08
HMGB1-203ENST00000341423 MAN2A2P49641 1150 aa8.3□□□□□ -1.08
HMGB1-203ENST00000341423 GPLD1P80108 840 aa8.3□□□□□ -1.08
HMGB1-203ENST00000341423 SCAPQ12770 1279 aa8.3□□□□□ -1.08
HMGB1-203ENST00000341423 TCEAL6Q6IPX3 200 aa8.3□□□□□ -1.08
HMGB1-203ENST00000341423 DIO2Q92813 273 aa8.3□□□□□ -1.08
HMGB1-203ENST00000341423 PWWP2AQ96N64 755 aa8.3□□□□□ -1.08
HMGB1-203ENST00000341423 ZFR2Q9UPR6 939 aaKnown RBP8.3□□□□□ -1.08
HMGB1-203ENST00000341423 NAALADL1Q9UQQ1 740 aa8.3□□□□□ -1.08
HMGB1-203ENST00000341423 TMEM184BQ9Y519 407 aaPredicted RBP8.3□□□□□ -1.08
HMGB1-203ENST00000341423 MYO7AQ13402 2215 aa8.3□□□□□ -1.08
HMGB1-203ENST00000341423 TMEM191CA6NGB0 347 aa8.3□□□□□ -1.08
HMGB1-203ENST00000341423 KCNK1O00180 336 aa8.3□□□□□ -1.08
HMGB1-203ENST00000341423 CPSF4O95639 269 aaKnown RBP8.3□□□□□ -1.08
HMGB1-203ENST00000341423 TMEM253P0C7T8 217 aa8.3□□□□□ -1.08
HMGB1-203ENST00000341423 BMP7P18075 431 aa8.3□□□□□ -1.08
HMGB1-203ENST00000341423 PEX19P40855 299 aa8.3□□□□□ -1.08
HMGB1-203ENST00000341423 CLCN2P51788 898 aa8.3□□□□□ -1.08
HMGB1-203ENST00000341423 PDE7AQ13946 482 aa8.3□□□□□ -1.08
HMGB1-203ENST00000341423 UGCGQ16739 394 aa8.3□□□□□ -1.08
HMGB1-203ENST00000341423 TMEM35AQ53FP2 167 aa8.3□□□□□ -1.08
HMGB1-203ENST00000341423 TMEM132CQ8N3T6 1108 aa8.3□□□□□ -1.08
HMGB1-203ENST00000341423 ZNF527Q8NB42 609 aa8.3□□□□□ -1.08
HMGB1-203ENST00000341423 UHMK1Q8TAS1 419 aaKnown RBP8.3□□□□□ -1.08
HMGB1-203ENST00000341423 CENPIQ92674 756 aaPredicted RBP8.3□□□□□ -1.08
HMGB1-203ENST00000341423 RHBDF1Q96CC6 855 aa8.3□□□□□ -1.08
HMGB1-203ENST00000341423 CCDC126Q96EE4 140 aa8.3□□□□□ -1.08
HMGB1-203ENST00000341423 VCX3BQ9H321 246 aa8.3□□□□□ -1.08
HMGB1-203ENST00000341423 GJB4Q9NTQ9 266 aa8.3□□□□□ -1.08
HMGB1-203ENST00000341423 DGKBQ9Y6T7 804 aa8.3□□□□□ -1.08
HMGB1-203ENST00000341423 NID2Q14112 1375 aa8.3□□□□□ -1.08
HMGB1-203ENST00000341423 C5orf60A6NFR6 353 aa8.3□□□□□ -1.08
HMGB1-203ENST00000341423 FAM90A27PA6NNH2 459 aa8.3□□□□□ -1.08
HMGB1-203ENST00000341423 KCNK5O95279 499 aa8.3□□□□□ -1.08
HMGB1-203ENST00000341423 STMN1P16949 149 aa8.3□□□□□ -1.08
HMGB1-203ENST00000341423 TNFRSF8P28908 595 aa8.3□□□□□ -1.08
HMGB1-203ENST00000341423 PLIN5Q00G26 463 aa8.3□□□□□ -1.08
HMGB1-203ENST00000341423 SLC14A1Q13336 389 aa8.3□□□□□ -1.08
HMGB1-203ENST00000341423 EFTUD2Q15029 972 aaKnown RBP eCLIP8.3□□□□□ -1.085e-16■■□□□ 13.9
HMGB1-203ENST00000341423 CLLU1OSQ5K130 101 aa8.3□□□□□ -1.08
HMGB1-203ENST00000341423 FAM171BQ6P995 826 aa8.3□□□□□ -1.08
HMGB1-203ENST00000341423 DNAAF1Q8NEP3 725 aa8.3□□□□□ -1.08
HMGB1-203ENST00000341423 SMPDL3AQ92484 453 aa8.3□□□□□ -1.08
HMGB1-203ENST00000341423 ERP27Q96DN0 273 aa8.3□□□□□ -1.08
HMGB1-203ENST00000341423 WASH6PQ9NQA3 447 aa8.3□□□□□ -1.08
HMGB1-203ENST00000341423 AURKCQ9UQB9 309 aa8.3□□□□□ -1.08
HMGB1-203ENST00000341423 GJE1A6NN92 205 aa8.29□□□□□ -1.08
HMGB1-203ENST00000341423 SCDO00767 359 aa8.29□□□□□ -1.08
HMGB1-203ENST00000341423 ANGPT2O15123 496 aa8.29□□□□□ -1.08
HMGB1-203ENST00000341423 POLR3GO15318 223 aaPredicted RBP8.29□□□□□ -1.08
HMGB1-203ENST00000341423 INSIG1O15503 277 aa8.29□□□□□ -1.08
HMGB1-203ENST00000341423 COCHO43405 550 aa8.29□□□□□ -1.08
HMGB1-203ENST00000341423 CSTBP04080 98 aaKnown RBP8.29□□□□□ -1.08
HMGB1-203ENST00000341423 RBP1P09455 135 aa8.29□□□□□ -1.08
HMGB1-203ENST00000341423 FGRP09769 529 aa8.29□□□□□ -1.08
HMGB1-203ENST00000341423 NR2F1P10589 423 aa8.29□□□□□ -1.08
HMGB1-203ENST00000341423 RPL10P27635 214 aaKnown RBP8.29□□□□□ -1.08
HMGB1-203ENST00000341423 SEC23AQ15436 765 aa8.29□□□□□ -1.08
HMGB1-203ENST00000341423 MOGQ16653 247 aa8.29□□□□□ -1.08
HMGB1-203ENST00000341423 HNRNPA1L2Q32P51 320 aaKnown RBP8.29□□□□□ -1.08
HMGB1-203ENST00000341423 FAM153CQ494X1 144 aa8.29□□□□□ -1.08
HMGB1-203ENST00000341423 KBTBD2Q8IY47 623 aa8.29□□□□□ -1.08
HMGB1-203ENST00000341423 EXD3Q8N9H8 876 aa8.29□□□□□ -1.08
HMGB1-203ENST00000341423 TFGQ92734 400 aaPredicted RBP8.29□□□□□ -1.08
HMGB1-203ENST00000341423 TCEAL4Q96EI5 215 aa8.29□□□□□ -1.08
HMGB1-203ENST00000341423 LINC00597Q9H2U6 94 aa8.29□□□□□ -1.08
HMGB1-203ENST00000341423 ICE1Q9Y2F5 2266 aa8.29□□□□□ -1.08
HMGB1-203ENST00000341423 PLK4O00444 970 aa8.29□□□□□ -1.08
HMGB1-203ENST00000341423 PRMT5O14744 637 aaPredicted RBP8.29□□□□□ -1.08
HMGB1-203ENST00000341423 LEFTY1O75610 366 aa8.29□□□□□ -1.08
HMGB1-203ENST00000341423 RECQL5O94762 991 aaPredicted RBP8.29□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms