RNA–Protein interactions for RNA: ENST00000295550.8

COL6A3-201, Transcript of collagen type VI alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL6A3, Length 10,749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-201ENST00000295550 C9orf57Q5W0N0 161 aa9.78□□□□□ -0.84
COL6A3-201ENST00000295550 ADNP2Q6IQ32 1131 aa9.78□□□□□ -0.84
COL6A3-201ENST00000295550 GK5Q6ZS86 529 aa9.78□□□□□ -0.84
COL6A3-201ENST00000295550 LRRC15Q8TF66 581 aa9.78□□□□□ -0.84
COL6A3-201ENST00000295550 ASB12Q8WXK4 309 aa9.78□□□□□ -0.84
COL6A3-201ENST00000295550 POLR1EQ9GZS1 481 aaKnown RBP9.78□□□□□ -0.84
COL6A3-201ENST00000295550 FKBP7Q9Y680 259 aa9.78□□□□□ -0.84
COL6A3-201ENST00000295550 DLEC1Q9Y238 1755 aa9.77□□□□□ -0.84
COL6A3-201ENST00000295550 XKRYO14609 159 aa9.77□□□□□ -0.84
COL6A3-201ENST00000295550 SMIM10L2AP0DMW4 78 aa9.77□□□□□ -0.84
COL6A3-201ENST00000295550 SMIM10L2BP0DMW5 78 aa9.77□□□□□ -0.84
COL6A3-201ENST00000295550 SNAPC1Q16533 368 aa9.77□□□□□ -0.84
COL6A3-201ENST00000295550 TIGD2Q4W5G0 525 aa9.77□□□□□ -0.84
COL6A3-201ENST00000295550 ANXA8L1Q5VT79 327 aa9.77□□□□□ -0.84
COL6A3-201ENST00000295550 FAM92BQ6ZTR7 304 aa9.77□□□□□ -0.84
COL6A3-201ENST00000295550 HDDC3Q8N4P3 179 aa9.77□□□□□ -0.84
COL6A3-201ENST00000295550 ZDHHC6Q9H6R6 413 aa9.77□□□□□ -0.84
COL6A3-201ENST00000295550 LRP5O75197 1615 aa9.77□□□□□ -0.84
COL6A3-201ENST00000295550 CHD5Q8TDI0 1954 aa9.77□□□□□ -0.84
COL6A3-201ENST00000295550 COL22A1Q8NFW1 1626 aaPredicted RBP9.77□□□□□ -0.84
COL6A3-201ENST00000295550 TRBC1P01850 177 aa9.77□□□□□ -0.84
COL6A3-201ENST00000295550 HOXD13P35453 343 aa9.77□□□□□ -0.84
COL6A3-201ENST00000295550 ELAVL2Q12926 359 aaKnown RBP9.77□□□□□ -0.84
COL6A3-201ENST00000295550 TCEA2Q15560 299 aa9.77□□□□□ -0.84
COL6A3-201ENST00000295550 OR5T3Q8NGG3 340 aa9.77□□□□□ -0.84
COL6A3-201ENST00000295550 CCDC107Q8WV48 283 aa9.77□□□□□ -0.84
COL6A3-201ENST00000295550 MAFIPQ8WZ33 124 aa9.77□□□□□ -0.84
COL6A3-201ENST00000295550 UROC1Q96N76 676 aa9.77□□□□□ -0.84
COL6A3-201ENST00000295550 CIB1Q99828 191 aa9.77□□□□□ -0.84
COL6A3-201ENST00000295550 ZNF471Q9BX82 626 aaPredicted RBP9.77□□□□□ -0.84
COL6A3-201ENST00000295550 ULBP1Q9BZM6 244 aa9.77□□□□□ -0.84
COL6A3-201ENST00000295550 METTL8Q9H825 291 aaKnown RBP9.77□□□□□ -0.84
COL6A3-201ENST00000295550 ATRXP46100 2492 aa9.77□□□□□ -0.85
COL6A3-201ENST00000295550 SLC28A1O00337 649 aa9.77□□□□□ -0.85
COL6A3-201ENST00000295550 CSH1P0DML2 217 aa9.77□□□□□ -0.85
COL6A3-201ENST00000295550 CSH2P0DML3 217 aa9.77□□□□□ -0.85
COL6A3-201ENST00000295550 ZBTB6Q15916 424 aa9.77□□□□□ -0.85
COL6A3-201ENST00000295550 GBA3Q9H227 469 aa9.77□□□□□ -0.85
COL6A3-201ENST00000295550 PCDHB5Q9Y5E4 795 aa9.77□□□□□ -0.85
COL6A3-201ENST00000295550 PITPNM1O00562 1244 aa9.77□□□□□ -0.85
COL6A3-201ENST00000295550 FPGTO14772 594 aa9.77□□□□□ -0.85
COL6A3-201ENST00000295550 IFNA16P05015 189 aa9.77□□□□□ -0.85
COL6A3-201ENST00000295550 DBIP07108 87 aaKnown RBP9.77□□□□□ -0.85
COL6A3-201ENST00000295550 ANXA5P08758 320 aa9.77□□□□□ -0.85
COL6A3-201ENST00000295550 PAX3P23760 479 aa9.77□□□□□ -0.85
COL6A3-201ENST00000295550 AQP1P29972 269 aa9.77□□□□□ -0.85
COL6A3-201ENST00000295550 PTPN9P43378 593 aa9.77□□□□□ -0.85
COL6A3-201ENST00000295550 DNASE1L1P49184 302 aa9.77□□□□□ -0.85
COL6A3-201ENST00000295550 MAN2A2P49641 1150 aa9.77□□□□□ -0.85
COL6A3-201ENST00000295550 AQP4P55087 323 aa9.77□□□□□ -0.85
COL6A3-201ENST00000295550 CSTF1Q05048 431 aaKnown RBP9.77□□□□□ -0.85
COL6A3-201ENST00000295550 EMC10Q5UCC4 262 aa9.77□□□□□ -0.85
COL6A3-201ENST00000295550 FRRS1Q6ZNA5 592 aa9.77□□□□□ -0.85
COL6A3-201ENST00000295550 DSELQ8IZU8 1212 aa9.77□□□□□ -0.85
COL6A3-201ENST00000295550 CBR4Q8N4T8 237 aa9.77□□□□□ -0.85
COL6A3-201ENST00000295550 OR2T12Q8NG77 320 aa9.77□□□□□ -0.85
COL6A3-201ENST00000295550 ABCG8Q9H221 673 aa9.77□□□□□ -0.85
COL6A3-201ENST00000295550 IFT80Q9P2H3 777 aaPredicted RBP9.77□□□□□ -0.85
COL6A3-201ENST00000295550 RFXANKO14593 260 aa9.77□□□□□ -0.85
COL6A3-201ENST00000295550 MPZL2O60487 215 aa9.77□□□□□ -0.85
COL6A3-201ENST00000295550 SREBF2Q12772 1141 aa9.77□□□□□ -0.85
COL6A3-201ENST00000295550 PAN2Q504Q3 1202 aaKnown RBP9.77□□□□□ -0.85
COL6A3-201ENST00000295550 ADAMTSL2Q86TH1 951 aa9.77□□□□□ -0.85
COL6A3-201ENST00000295550 PPM1MQ96MI6 270 aa9.77□□□□□ -0.85
COL6A3-201ENST00000295550 MRPL45Q9BRJ2 306 aaKnown RBP9.77□□□□□ -0.85
COL6A3-201ENST00000295550 TRMOQ9BU70 441 aa9.77□□□□□ -0.85
COL6A3-201ENST00000295550 KANSL3Q9P2N6 904 aa9.77□□□□□ -0.85
COL6A3-201ENST00000295550 PSMD9O00233 223 aa9.77□□□□□ -0.85
COL6A3-201ENST00000295550 B4GALT5O43286 388 aa9.77□□□□□ -0.85
COL6A3-201ENST00000295550 UGT1A9O60656 530 aa9.77□□□□□ -0.85
COL6A3-201ENST00000295550 ITGB1P05556 798 aa9.77□□□□□ -0.85
COL6A3-201ENST00000295550 UGT1A6P19224 532 aa9.77□□□□□ -0.85
COL6A3-201ENST00000295550 UGT1A1P22309 533 aa9.77□□□□□ -0.85
COL6A3-201ENST00000295550 UGT1A4P22310 534 aa9.77□□□□□ -0.85
COL6A3-201ENST00000295550 PEX2P28328 305 aa9.77□□□□□ -0.85
COL6A3-201ENST00000295550 UGT1A3P35503 534 aa9.77□□□□□ -0.85
COL6A3-201ENST00000295550 PRAMEF17Q5VTA0 474 aa9.77□□□□□ -0.85
COL6A3-201ENST00000295550 C12orf29Q8N999 325 aa9.77□□□□□ -0.85
COL6A3-201ENST00000295550 CLEC4DQ8WXI8 215 aa9.77□□□□□ -0.85
COL6A3-201ENST00000295550 CADM1Q9BY67 442 aaKnown RBP9.77□□□□□ -0.85
COL6A3-201ENST00000295550 UGT1A7Q9HAW7 530 aa9.77□□□□□ -0.85
COL6A3-201ENST00000295550 UGT1A10Q9HAW8 530 aa9.77□□□□□ -0.85
COL6A3-201ENST00000295550 UGT1A8Q9HAW9 530 aa9.77□□□□□ -0.85
COL6A3-201ENST00000295550 PLEKHA1Q9HB21 404 aa9.77□□□□□ -0.85
COL6A3-201ENST00000295550 ADAMTS7Q9UKP4 1686 aa9.77□□□□□ -0.85
COL6A3-201ENST00000295550 COL18A1P39060 1754 aa9.77□□□□□ -0.85
COL6A3-201ENST00000295550 PRAMEF1O95521 474 aa9.77□□□□□ -0.85
COL6A3-201ENST00000295550 FESP07332 822 aa9.77□□□□□ -0.85
COL6A3-201ENST00000295550 FOSL1P15407 271 aa9.77□□□□□ -0.85
COL6A3-201ENST00000295550 PSEN2P49810 448 aa9.77□□□□□ -0.85
COL6A3-201ENST00000295550 ZMYND11Q15326 602 aa9.77□□□□□ -0.85
COL6A3-201ENST00000295550 PDCD4Q53EL6 469 aaKnown RBP9.77□□□□□ -0.85
COL6A3-201ENST00000295550 CDKL4Q5MAI5 379 aa9.77□□□□□ -0.85
COL6A3-201ENST00000295550 SLC22A4Q9H015 551 aa9.77□□□□□ -0.85
COL6A3-201ENST00000295550 COL20A1Q9P218 1284 aa9.77□□□□□ -0.85
COL6A3-201ENST00000295550 PDHXO00330 501 aa9.77□□□□□ -0.85
COL6A3-201ENST00000295550 CPNE3O75131 537 aaKnown RBP9.77□□□□□ -0.85
COL6A3-201ENST00000295550 ANGPTL1O95841 491 aa9.77□□□□□ -0.85
COL6A3-201ENST00000295550 COL6A2P12110 1019 aa9.77□□□□□ -0.85
COL6A3-201ENST00000295550 FOXN2P32314 431 aa9.77□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 40.8 ms