RNA–Protein interactions for RNA: ENST00000641996.1

SCN1A-221, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

Gene SCN1A, Length 12,903 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-221ENST00000641996 BIKQ13323 160 aa3.54□□□□□ -1.84
SCN1A-221ENST00000641996 RAB31Q13636 194 aa3.54□□□□□ -1.84
SCN1A-221ENST00000641996 CYP27C1Q4G0S4 372 aa3.54□□□□□ -1.84
SCN1A-221ENST00000641996 HP1BP3Q5SSJ5 553 aaPredicted RBP3.54□□□□□ -1.84
SCN1A-221ENST00000641996 CERCAMQ5T4B2 595 aa3.54□□□□□ -1.84
SCN1A-221ENST00000641996 CYFIP1Q7L576 1253 aa3.54□□□□□ -1.84
SCN1A-221ENST00000641996 ZCCHC7Q8N3Z6 543 aaKnown RBP3.54□□□□□ -1.84
SCN1A-221ENST00000641996 OR2C3Q8N628 320 aa3.54□□□□□ -1.84
SCN1A-221ENST00000641996 RTL3Q8N8U3 475 aaKnown RBP3.54□□□□□ -1.84
SCN1A-221ENST00000641996 RNF31Q96EP0 1072 aa3.54□□□□□ -1.84
SCN1A-221ENST00000641996 SERPINB12Q96P63 405 aa3.54□□□□□ -1.84
SCN1A-221ENST00000641996 BCL2L14Q9BZR8 327 aa3.54□□□□□ -1.84
SCN1A-221ENST00000641996 ZNF700Q9H0M5 742 aa3.54□□□□□ -1.84
SCN1A-221ENST00000641996 EXO5Q9H790 373 aa3.54□□□□□ -1.84
SCN1A-221ENST00000641996 PCDH9Q9HC56 1237 aa3.54□□□□□ -1.84
SCN1A-221ENST00000641996 ZFP14Q9HCL3 533 aa3.54□□□□□ -1.84
SCN1A-221ENST00000641996 DKKL1Q9UK85 242 aa3.54□□□□□ -1.84
SCN1A-221ENST00000641996 NUMBLQ9Y6R0 609 aa3.54□□□□□ -1.84
SCN1A-221ENST00000641996 TPP1O14773 563 aa3.54□□□□□ -1.84
SCN1A-221ENST00000641996 COCHO43405 550 aa3.54□□□□□ -1.84
SCN1A-221ENST00000641996 PSTPIP1O43586 416 aa3.54□□□□□ -1.84
SCN1A-221ENST00000641996 UTS2O95399 124 aa3.54□□□□□ -1.84
SCN1A-221ENST00000641996 BCL10O95999 233 aa3.54□□□□□ -1.84
SCN1A-221ENST00000641996 CSH1P0DML2 217 aa3.54□□□□□ -1.84
SCN1A-221ENST00000641996 CSH2P0DML3 217 aa3.54□□□□□ -1.84
SCN1A-221ENST00000641996 CYP11B1P15538 503 aa3.54□□□□□ -1.84
SCN1A-221ENST00000641996 TNFRSF8P28908 595 aa3.54□□□□□ -1.84
SCN1A-221ENST00000641996 CASP1P29466 404 aa3.54□□□□□ -1.84
SCN1A-221ENST00000641996 CLCN7P51798 805 aa3.54□□□□□ -1.84
SCN1A-221ENST00000641996 SUMO3P55854 103 aaPredicted RBP3.54□□□□□ -1.84
SCN1A-221ENST00000641996 MRPS22P82650 360 aaKnown RBP3.54□□□□□ -1.84
SCN1A-221ENST00000641996 MBTD1Q05BQ5 628 aa3.54□□□□□ -1.84
SCN1A-221ENST00000641996 ANKRD39Q53RE8 183 aa3.54□□□□□ -1.84
SCN1A-221ENST00000641996 NT5DC3Q86UY8 548 aa3.54□□□□□ -1.84
SCN1A-221ENST00000641996 CCNJLQ8IV13 435 aa3.54□□□□□ -1.84
SCN1A-221ENST00000641996 ANGPTL6Q8NI99 470 aa3.54□□□□□ -1.84
SCN1A-221ENST00000641996 C22orf15Q8WYQ4 148 aa3.54□□□□□ -1.84
SCN1A-221ENST00000641996 SH2D3AQ9BRG2 576 aa3.54□□□□□ -1.84
SCN1A-221ENST00000641996 NAT9Q9BTE0 207 aa3.54□□□□□ -1.84
SCN1A-221ENST00000641996 CHRDQ9H2X0 955 aa3.54□□□□□ -1.84
SCN1A-221ENST00000641996 TIGARQ9NQ88 270 aa3.54□□□□□ -1.84
SCN1A-221ENST00000641996 IFT46Q9NQC8 304 aa3.54□□□□□ -1.84
SCN1A-221ENST00000641996 MTMR10Q9NXD2 777 aa3.54□□□□□ -1.84
SCN1A-221ENST00000641996 SH3BP4Q9P0V3 963 aa3.54□□□□□ -1.84
SCN1A-221ENST00000641996 MGAT4BQ9UQ53 548 aa3.54□□□□□ -1.84
SCN1A-221ENST00000641996 GPR45Q9Y5Y3 372 aa3.54□□□□□ -1.84
SCN1A-221ENST00000641996 PEG3Q9GZU2 1588 aa3.54□□□□□ -1.84
SCN1A-221ENST00000641996 ZNF98A6NK75 572 aa3.54□□□□□ -1.84
SCN1A-221ENST00000641996 VSTM2BA6NLU5 285 aa3.54□□□□□ -1.84
SCN1A-221ENST00000641996 PRKCGP05129 697 aa3.54□□□□□ -1.84
SCN1A-221ENST00000641996 PGK2P07205 417 aa3.54□□□□□ -1.84
SCN1A-221ENST00000641996 IFNAR1P17181 557 aa3.54□□□□□ -1.84
SCN1A-221ENST00000641996 PTAFRP25105 342 aa3.54□□□□□ -1.84
SCN1A-221ENST00000641996 P4HA3Q7Z4N8 544 aa3.54□□□□□ -1.84
SCN1A-221ENST00000641996 RASAL3Q86YV0 1011 aa3.54□□□□□ -1.84
SCN1A-221ENST00000641996 FLAD1Q8NFF5 587 aa3.54□□□□□ -1.84
SCN1A-221ENST00000641996 OR52N1Q8NH53 320 aa3.54□□□□□ -1.84
SCN1A-221ENST00000641996 PHYHIPQ92561 330 aa3.54□□□□□ -1.84
SCN1A-221ENST00000641996 NKD1Q969G9 470 aa3.54□□□□□ -1.84
SCN1A-221ENST00000641996 SERAC1Q96JX3 654 aa3.54□□□□□ -1.84
SCN1A-221ENST00000641996 FAM227BQ96M60 508 aa3.54□□□□□ -1.84
SCN1A-221ENST00000641996 OSMRQ99650 979 aa3.54□□□□□ -1.84
SCN1A-221ENST00000641996 SPATA5L1Q9BVQ7 753 aa3.54□□□□□ -1.84
SCN1A-221ENST00000641996 REXO4Q9GZR2 422 aaKnown RBP3.54□□□□□ -1.84
SCN1A-221ENST00000641996 SLC22A4Q9H015 551 aa3.54□□□□□ -1.84
SCN1A-221ENST00000641996 MRPL44Q9H9J2 332 aaKnown RBP3.54□□□□□ -1.84
SCN1A-221ENST00000641996 ZNF334Q9HCZ1 680 aaPredicted RBP3.54□□□□□ -1.84
SCN1A-221ENST00000641996 ARHGEF4Q9NR80 690 aa3.54□□□□□ -1.84
SCN1A-221ENST00000641996 NYAP2Q9P242 653 aa3.54□□□□□ -1.84
SCN1A-221ENST00000641996 ZNF112Q9UJU3 913 aa3.54□□□□□ -1.84
SCN1A-221ENST00000641996 ORC6Q9Y5N6 252 aa3.54□□□□□ -1.84
SCN1A-221ENST00000641996 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP3.54□□□□□ -1.84
SCN1A-221ENST00000641996 OR6B1O95007 311 aa3.54□□□□□ -1.84
SCN1A-221ENST00000641996 TFRCP02786 760 aaKnown RBP3.54□□□□□ -1.84
SCN1A-221ENST00000641996 ASGR2P07307 311 aa3.54□□□□□ -1.84
SCN1A-221ENST00000641996 EPORP19235 508 aa3.54□□□□□ -1.84
SCN1A-221ENST00000641996 GNA15P30679 374 aa3.54□□□□□ -1.84
SCN1A-221ENST00000641996 MAGEB1P43366 347 aa3.54□□□□□ -1.84
SCN1A-221ENST00000641996 TAS2R40P59535 323 aa3.54□□□□□ -1.84
SCN1A-221ENST00000641996 RPS7P62081 194 aaKnown RBP3.54□□□□□ -1.84
SCN1A-221ENST00000641996 GTF2IP78347 998 aa3.54□□□□□ -1.84
SCN1A-221ENST00000641996 CLINT1Q14677 625 aa3.54□□□□□ -1.84
SCN1A-221ENST00000641996 CERS6Q6ZMG9 384 aa3.54□□□□□ -1.84
SCN1A-221ENST00000641996 DENND5BQ6ZUT9 1274 aa3.54□□□□□ -1.84
SCN1A-221ENST00000641996 ZNF283Q8N7M2 679 aa3.54□□□□□ -1.84
SCN1A-221ENST00000641996 MLKLQ8NB16 471 aa3.54□□□□□ -1.84
SCN1A-221ENST00000641996 FAM174AQ8TBP5 190 aa3.54□□□□□ -1.84
SCN1A-221ENST00000641996 ASB11Q8WXH4 323 aa3.54□□□□□ -1.84
SCN1A-221ENST00000641996 ST8SIA4Q92187 359 aa3.54□□□□□ -1.84
SCN1A-221ENST00000641996 ZNF486Q96H40 463 aaPredicted RBP3.54□□□□□ -1.84
SCN1A-221ENST00000641996 ZNF764Q96H86 408 aaPredicted RBP3.54□□□□□ -1.84
SCN1A-221ENST00000641996 TMEM41AQ96HV5 264 aa3.54□□□□□ -1.84
SCN1A-221ENST00000641996 CLUHP3Q96NS8 147 aa3.54□□□□□ -1.84
SCN1A-221ENST00000641996 FICDQ9BVA6 458 aa3.54□□□□□ -1.84
SCN1A-221ENST00000641996 METTL9Q9H1A3 318 aa3.54□□□□□ -1.84
SCN1A-221ENST00000641996 MAGEH1Q9H213 219 aa3.54□□□□□ -1.84
SCN1A-221ENST00000641996 LRRC4BQ9NT99 713 aa3.54□□□□□ -1.84
SCN1A-221ENST00000641996 STAU2Q9NUL3 570 aaKnown RBP eCLIP3.54□□□□□ -1.84
SCN1A-221ENST00000641996 PANK4Q9NVE7 773 aa3.54□□□□□ -1.84
SCN1A-221ENST00000641996 FAM120CQ9NX05 1096 aaKnown RBP3.54□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms