RNA–Protein interactions for RNA: ENST00000639659.1

SYNE2-228, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best) BASIC

Gene SYNE2, Length 1,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-228ENST00000639659 AMACRQ9UHK6 382 aa14.73□□□□□ -0.05
SYNE2-228ENST00000639659 PSMD13Q9UNM6 376 aa14.73□□□□□ -0.05
SYNE2-228ENST00000639659 NBPF19A0A087WUL8 3843 aa14.72□□□□□ -0.05
SYNE2-228ENST00000639659 GPR89AB7ZAQ6 455 aa14.72□□□□□ -0.05
SYNE2-228ENST00000639659 MYO1FO00160 1098 aa14.72□□□□□ -0.05
SYNE2-228ENST00000639659 DDX3YO15523 660 aaKnown RBP14.72□□□□□ -0.05
SYNE2-228ENST00000639659 GPR89BP0CG08 455 aa14.72□□□□□ -0.05
SYNE2-228ENST00000639659 MX2P20592 715 aa14.72□□□□□ -0.05
SYNE2-228ENST00000639659 COL8A1P27658 744 aa14.72□□□□□ -0.05
SYNE2-228ENST00000639659 PTPN4P29074 926 aa14.72□□□□□ -0.05
SYNE2-228ENST00000639659 PBLDP30039 288 aaPredicted RBP14.72□□□□□ -0.05
SYNE2-228ENST00000639659 PTGIRP43119 386 aa14.72□□□□□ -0.05
SYNE2-228ENST00000639659 ZBTB17Q13105 803 aa14.72□□□□□ -0.05
SYNE2-228ENST00000639659 MRPL49Q13405 166 aaKnown RBP14.72□□□□□ -0.05
SYNE2-228ENST00000639659 NFKBIBQ15653 356 aa14.72□□□□□ -0.05
SYNE2-228ENST00000639659 UGT8Q16880 541 aa14.72□□□□□ -0.05
SYNE2-228ENST00000639659 EIF2S3LQ2VIR3 472 aaKnown RBP14.72□□□□□ -0.05
SYNE2-228ENST00000639659 CCDC183Q5T5S1 534 aa14.72□□□□□ -0.05
SYNE2-228ENST00000639659 RBM43Q6ZSC3 357 aaKnown RBP14.72□□□□□ -0.05
SYNE2-228ENST00000639659 TMEM126BQ8IUX1 230 aa14.72□□□□□ -0.05
SYNE2-228ENST00000639659 ZNF547Q8IVP9 402 aa14.72□□□□□ -0.05
SYNE2-228ENST00000639659 NIPA2Q8N8Q9 360 aa14.72□□□□□ -0.05
SYNE2-228ENST00000639659 PRR7Q8TB68 274 aa14.72□□□□□ -0.05
SYNE2-228ENST00000639659 TTC25Q96NG3 672 aa14.72□□□□□ -0.05
SYNE2-228ENST00000639659 TSGA13Q96PP4 275 aa14.72□□□□□ -0.05
SYNE2-228ENST00000639659 MAP3K3Q99759 626 aa14.72□□□□□ -0.05
SYNE2-228ENST00000639659 ING2Q9H160 280 aa14.72□□□□□ -0.05
SYNE2-228ENST00000639659 SLAMF7Q9NQ25 335 aa14.72□□□□□ -0.05
SYNE2-228ENST00000639659 RAD18Q9NS91 495 aa14.72□□□□□ -0.05
SYNE2-228ENST00000639659 FGF21Q9NSA1 209 aa14.72□□□□□ -0.05
SYNE2-228ENST00000639659 WDR37Q9Y2I8 494 aa14.72□□□□□ -0.05
SYNE2-228ENST00000639659 ESPL1Q14674 2120 aa14.72□□□□□ -0.05
SYNE2-228ENST00000639659 UNC79Q9P2D8 2635 aa14.72□□□□□ -0.05
SYNE2-228ENST00000639659 UBA6A0AVT1 1052 aaPredicted RBP14.71□□□□□ -0.05
SYNE2-228ENST00000639659 GOLGA6L3A6NEY3 463 aa14.71□□□□□ -0.05
SYNE2-228ENST00000639659 A6NL46 340 aa14.71□□□□□ -0.05
SYNE2-228ENST00000639659 CHUKO15111 745 aa14.71□□□□□ -0.05
SYNE2-228ENST00000639659 SCRG1O75711 98 aa14.71□□□□□ -0.05
SYNE2-228ENST00000639659 ATXN8OSP0DMR3 200 aa14.71□□□□□ -0.05
SYNE2-228ENST00000639659 BPIP17213 487 aa14.71□□□□□ -0.05
SYNE2-228ENST00000639659 DCDC1P59894 354 aa14.71□□□□□ -0.05
SYNE2-228ENST00000639659 ACY1Q03154 408 aa14.71□□□□□ -0.05
SYNE2-228ENST00000639659 AP1B1Q10567 949 aa14.71□□□□□ -0.05
SYNE2-228ENST00000639659 INPP5JQ15735 1006 aaPredicted RBP14.71□□□□□ -0.05
SYNE2-228ENST00000639659 GPR19Q15760 415 aa14.71□□□□□ -0.05
SYNE2-228ENST00000639659 CHRNA6Q15825 494 aa14.71□□□□□ -0.05
SYNE2-228ENST00000639659 DNTTIP2Q5QJE6 756 aaKnown RBP14.71□□□□□ -0.05
SYNE2-228ENST00000639659 ZNF787Q6DD87 383 aa14.71□□□□□ -0.05
SYNE2-228ENST00000639659 ABRAXAS1Q6UWZ7 409 aa14.71□□□□□ -0.05
SYNE2-228ENST00000639659 SYVN1Q86TM6 617 aa14.71□□□□□ -0.05
SYNE2-228ENST00000639659 RBM12BQ8IXT5 1001 aaKnown RBP14.71□□□□□ -0.05
SYNE2-228ENST00000639659 THAP4Q8WY91 577 aa14.71□□□□□ -0.05
SYNE2-228ENST00000639659 SEC14L1Q92503 715 aa14.71□□□□□ -0.05
SYNE2-228ENST00000639659 UBXN4Q92575 508 aa14.71□□□□□ -0.05
SYNE2-228ENST00000639659 HDAC11Q96DB2 347 aa14.71□□□□□ -0.05
SYNE2-228ENST00000639659 ZNF514Q96K75 400 aaPredicted RBP14.71□□□□□ -0.05
SYNE2-228ENST00000639659 AGAP3Q96P47 875 aa14.71□□□□□ -0.05
SYNE2-228ENST00000639659 ZNF670Q9BS34 389 aa14.71□□□□□ -0.05
SYNE2-228ENST00000639659 GPR87Q9BY21 358 aa14.71□□□□□ -0.05
SYNE2-228ENST00000639659 SLC29A3Q9BZD2 475 aa14.71□□□□□ -0.05
SYNE2-228ENST00000639659 SOHLH2Q9NX45 425 aa14.71□□□□□ -0.05
SYNE2-228ENST00000639659 FAM8A1Q9UBU6 413 aa14.71□□□□□ -0.05
SYNE2-228ENST00000639659 G3BP2Q9UN86 482 aaKnown RBP14.71□□□□□ -0.05
SYNE2-228ENST00000639659 MAP4K5Q9Y4K4 846 aa14.71□□□□□ -0.05
SYNE2-228ENST00000639659 HEY1Q9Y5J3 304 aa14.71□□□□□ -0.05
SYNE2-228ENST00000639659 CFAP20Q9Y6A4 193 aaKnown RBP14.71□□□□□ -0.05
SYNE2-228ENST00000639659 ZNF185O15231 689 aa14.7□□□□□ -0.06
SYNE2-228ENST00000639659 VEGFDO43915 354 aa14.7□□□□□ -0.06
SYNE2-228ENST00000639659 CPNE3O75131 537 aaKnown RBP14.7□□□□□ -0.06
SYNE2-228ENST00000639659 ARCN1P48444 511 aaKnown RBP14.7□□□□□ -0.06
SYNE2-228ENST00000639659 ARSEP51690 589 aa14.7□□□□□ -0.06
SYNE2-228ENST00000639659 SLC10A2Q12908 348 aaPredicted RBP14.7□□□□□ -0.06
SYNE2-228ENST00000639659 RAPSNQ13702 412 aa14.7□□□□□ -0.06
SYNE2-228ENST00000639659 FAM69BQ5VUD6 431 aa14.7□□□□□ -0.06
SYNE2-228ENST00000639659 KLHL35Q6PF15 583 aa14.7□□□□□ -0.06
SYNE2-228ENST00000639659 B4GALNT4Q76KP1 1039 aa14.7□□□□□ -0.06
SYNE2-228ENST00000639659 MAP7D3Q8IWC1 876 aa14.7□□□□□ -0.06
SYNE2-228ENST00000639659 SLC41A2Q96JW4 573 aa14.7□□□□□ -0.06
SYNE2-228ENST00000639659 WASH6PQ9NQA3 447 aa14.7□□□□□ -0.06
SYNE2-228ENST00000639659 IMP3Q9NV31 184 aaKnown RBP14.7□□□□□ -0.06
SYNE2-228ENST00000639659 EPHA6Q9UF33 1036 aa14.7□□□□□ -0.06
SYNE2-228ENST00000639659 FARSAQ9Y285 508 aaKnown RBP14.7□□□□□ -0.06
SYNE2-228ENST00000639659 ZNF451Q9Y4E5 1061 aa14.7□□□□□ -0.06
SYNE2-228ENST00000639659 SHANK1Q9Y566 2161 aa14.7□□□□□ -0.06
SYNE2-228ENST00000639659 TCP11X1B4DZS4 312 aa14.69□□□□□ -0.06
SYNE2-228ENST00000639659 SORBS2O94875 1100 aaKnown RBP14.69□□□□□ -0.06
SYNE2-228ENST00000639659 FECHP22830 423 aa14.69□□□□□ -0.06
SYNE2-228ENST00000639659 TAS2R40P59535 323 aa14.69□□□□□ -0.06
SYNE2-228ENST00000639659 TYRO3Q06418 890 aa14.69□□□□□ -0.06
SYNE2-228ENST00000639659 GPS2Q13227 327 aa14.69□□□□□ -0.06
SYNE2-228ENST00000639659 XRCC4Q13426 336 aa14.69□□□□□ -0.06
SYNE2-228ENST00000639659 PDK2Q15119 407 aa14.69□□□□□ -0.06
SYNE2-228ENST00000639659 ANO6Q4KMQ2 910 aa14.69□□□□□ -0.06
SYNE2-228ENST00000639659 ATP13A5Q4VNC0 1218 aa14.69□□□□□ -0.06
SYNE2-228ENST00000639659 AGAP9Q5VTM2 703 aa14.69□□□□□ -0.06
SYNE2-228ENST00000639659 PDPK2PQ6A1A2 396 aa14.69□□□□□ -0.06
SYNE2-228ENST00000639659 CCDC70Q6NSX1 233 aa14.69□□□□□ -0.06
SYNE2-228ENST00000639659 ARMC6Q6NXE6 501 aa14.69□□□□□ -0.06
SYNE2-228ENST00000639659 DUS1LQ6P1R4 473 aaKnown RBP14.69□□□□□ -0.06
SYNE2-228ENST00000639659 FBXO38Q6PIJ6 1188 aa14.69□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 77.9 ms