RNA–Protein interactions for RNA: ENST00000627371.1

PTCD3-220, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 5 BASIC

Gene PTCD3, Length 210 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-220ENST00000627371 STAMBPL1Q96FJ0 436 aa20■□□□□ 0.79
PTCD3-220ENST00000627371 TRIM56Q9BRZ2 755 aaKnown RBP20■□□□□ 0.79
PTCD3-220ENST00000627371 DPH5Q9H2P9 285 aa20■□□□□ 0.79
PTCD3-220ENST00000627371 KLC4Q9NSK0 619 aa20■□□□□ 0.79
PTCD3-220ENST00000627371 CATSPERZQ9NTU4 200 aa20■□□□□ 0.79
PTCD3-220ENST00000627371 SLC23A2Q9UGH3 650 aa20■□□□□ 0.79
PTCD3-220ENST00000627371 PCDHGA1Q9Y5H4 931 aa20■□□□□ 0.79
PTCD3-220ENST00000627371 MAD1L1Q9Y6D9 718 aa20■□□□□ 0.79
PTCD3-220ENST00000627371 DNMT3AQ9Y6K1 912 aaPredicted RBP20■□□□□ 0.79
PTCD3-220ENST00000627371 RPS6KL1Q9Y6S9 549 aa20■□□□□ 0.79
PTCD3-220ENST00000627371 PRR19A6NJB7 356 aa19.99■□□□□ 0.79
PTCD3-220ENST00000627371 SGTAO43765 313 aa19.99■□□□□ 0.79
PTCD3-220ENST00000627371 NOBOXO60393 691 aa19.99■□□□□ 0.79
PTCD3-220ENST00000627371 USP1O94782 785 aa19.99■□□□□ 0.79
PTCD3-220ENST00000627371 DKK1O94907 266 aa19.99■□□□□ 0.79
PTCD3-220ENST00000627371 VAPBO95292 243 aa19.99■□□□□ 0.79
PTCD3-220ENST00000627371 MYF5P13349 255 aa19.99■□□□□ 0.79
PTCD3-220ENST00000627371 PRLHRP49683 370 aa19.99■□□□□ 0.79
PTCD3-220ENST00000627371 SEMA3AQ14563 771 aa19.99■□□□□ 0.79
PTCD3-220ENST00000627371 HIF1AQ16665 826 aa19.99■□□□□ 0.79
PTCD3-220ENST00000627371 ANKRD20A4Q4UJ75 823 aa19.99■□□□□ 0.79
PTCD3-220ENST00000627371 MSS51Q4VC12 460 aa19.99■□□□□ 0.79
PTCD3-220ENST00000627371 AARS2Q5JTZ9 985 aaKnown RBP19.99■□□□□ 0.79
PTCD3-220ENST00000627371 PACS1Q6VY07 963 aa19.99■□□□□ 0.79
PTCD3-220ENST00000627371 MMGT1Q8N4V1 131 aa19.99■□□□□ 0.79
PTCD3-220ENST00000627371 ZDHHC1Q8WTX9 485 aa19.99■□□□□ 0.79
PTCD3-220ENST00000627371 TTC1Q99614 292 aa19.99■□□□□ 0.79
PTCD3-220ENST00000627371 GULP1Q9UBP9 304 aa19.99■□□□□ 0.79
PTCD3-220ENST00000627371 APOBEC2Q9Y235 224 aaKnown RBP19.99■□□□□ 0.79
PTCD3-220ENST00000627371 PTPRBP23467 1997 aa19.99■□□□□ 0.79
PTCD3-220ENST00000627371 EME2A4GXA9 379 aaPredicted RBP19.98■□□□□ 0.79
PTCD3-220ENST00000627371 CD3EAPO15446 510 aaKnown RBP19.98■□□□□ 0.79
PTCD3-220ENST00000627371 KCNJ13O60928 360 aa19.98■□□□□ 0.79
PTCD3-220ENST00000627371 VCLP18206 1134 aa19.98■□□□□ 0.79
PTCD3-220ENST00000627371 PGAM1P18669 254 aa19.98■□□□□ 0.79
PTCD3-220ENST00000627371 PPARGP37231 505 aaPredicted RBP19.98■□□□□ 0.79
PTCD3-220ENST00000627371 NSG1P42857 185 aa19.98■□□□□ 0.79
PTCD3-220ENST00000627371 ARCN1P48444 511 aaKnown RBP19.98■□□□□ 0.79
PTCD3-220ENST00000627371 ARL4CP56559 192 aa19.98■□□□□ 0.79
PTCD3-220ENST00000627371 DMPKQ09013 629 aa19.98■□□□□ 0.79
PTCD3-220ENST00000627371 ILKQ13418 452 aa19.98■□□□□ 0.79
PTCD3-220ENST00000627371 BBS9Q3SYG4 887 aa19.98■□□□□ 0.79
PTCD3-220ENST00000627371 SLCO6A1Q86UG4 719 aa19.98■□□□□ 0.79
PTCD3-220ENST00000627371 AMZ2Q86W34 360 aa19.98■□□□□ 0.79
PTCD3-220ENST00000627371 C17orf82Q86X59 251 aaPredicted RBP19.98■□□□□ 0.79
PTCD3-220ENST00000627371 SFTPA2Q8IWL1 248 aa19.98■□□□□ 0.79
PTCD3-220ENST00000627371 NAGSQ8N159 534 aa19.98■□□□□ 0.79
PTCD3-220ENST00000627371 BEND7Q8N7W2 519 aaPredicted RBP19.98■□□□□ 0.79
PTCD3-220ENST00000627371 CEP112Q8N8E3 955 aa19.98■□□□□ 0.79
PTCD3-220ENST00000627371 NAT14Q8WUY8 206 aa19.98■□□□□ 0.79
PTCD3-220ENST00000627371 LINC00615Q96LM1 132 aaPredicted RBP19.98■□□□□ 0.79
PTCD3-220ENST00000627371 PWWP2AQ96N64 755 aa19.98■□□□□ 0.79
PTCD3-220ENST00000627371 FCRL3Q96P31 734 aaPredicted RBP19.98■□□□□ 0.79
PTCD3-220ENST00000627371 EBNA1BP2Q99848 306 aaKnown RBP19.98■□□□□ 0.79
PTCD3-220ENST00000627371 NAT9Q9BTE0 207 aa19.98■□□□□ 0.79
PTCD3-220ENST00000627371 LRRC1Q9BTT6 524 aa19.98■□□□□ 0.79
PTCD3-220ENST00000627371 GRHL1Q9NZI5 618 aa19.98■□□□□ 0.79
PTCD3-220ENST00000627371 MARCH4Q9P2E8 410 aaPredicted RBP19.98■□□□□ 0.79
PTCD3-220ENST00000627371 TBC1D29Q9UFV1 150 aa19.98■□□□□ 0.79
PTCD3-220ENST00000627371 DNAJC16Q9Y2G8 782 aa19.98■□□□□ 0.79
PTCD3-220ENST00000627371 ZCWPW2A0A1B0GU75 182 aa19.97■□□□□ 0.79
PTCD3-220ENST00000627371 KLHL33A6NCF5 533 aa19.97■□□□□ 0.79
PTCD3-220ENST00000627371 A6NCN8 305 aa19.97■□□□□ 0.79
PTCD3-220ENST00000627371 BANF1O75531 89 aa19.97■□□□□ 0.79
PTCD3-220ENST00000627371 RFPL3O75679 317 aa19.97■□□□□ 0.79
PTCD3-220ENST00000627371 POP7O75817 140 aaKnown RBP19.97■□□□□ 0.79
PTCD3-220ENST00000627371 AP2A2O94973 939 aa19.97■□□□□ 0.79
PTCD3-220ENST00000627371 TTPAP49638 278 aa19.97■□□□□ 0.79
PTCD3-220ENST00000627371 C14orf28Q4W4Y0 310 aa19.97■□□□□ 0.79
PTCD3-220ENST00000627371 N4BP2L1Q5TBK1 243 aaPredicted RBP19.97■□□□□ 0.79
PTCD3-220ENST00000627371 GUSBP11Q6P575 273 aa19.97■□□□□ 0.79
PTCD3-220ENST00000627371 PNPLA1Q8N8W4 532 aa19.97■□□□□ 0.79
PTCD3-220ENST00000627371 NOA1Q8NC60 698 aaKnown RBP19.97■□□□□ 0.79
PTCD3-220ENST00000627371 NAT6Q93015 286 aa19.97■□□□□ 0.79
PTCD3-220ENST00000627371 LRRC39Q96DD0 335 aa19.97■□□□□ 0.79
PTCD3-220ENST00000627371 OSGEPL1Q9H4B0 414 aa19.97■□□□□ 0.79
PTCD3-220ENST00000627371 PADI4Q9UM07 663 aa19.97■□□□□ 0.79
PTCD3-220ENST00000627371 QSOX1O00391 747 aa19.96■□□□□ 0.79
PTCD3-220ENST00000627371 TTC4O95801 387 aa19.96■□□□□ 0.79
PTCD3-220ENST00000627371 EML2O95834 649 aa19.96■□□□□ 0.79
PTCD3-220ENST00000627371 POLBP06746 335 aa19.96■□□□□ 0.79
PTCD3-220ENST00000627371 GP1BAP07359 652 aa19.96■□□□□ 0.79
PTCD3-220ENST00000627371 DRG2P55039 364 aaKnown RBP19.96■□□□□ 0.79
PTCD3-220ENST00000627371 SLC7A5Q01650 507 aa19.96■□□□□ 0.79
PTCD3-220ENST00000627371 CBLBQ13191 982 aa19.96■□□□□ 0.79
PTCD3-220ENST00000627371 HLTFQ14527 1009 aaKnown RBP eCLIP19.96■□□□□ 0.79
PTCD3-220ENST00000627371 MRNIPQ6NTE8 343 aa19.96■□□□□ 0.79
PTCD3-220ENST00000627371 ERMP1Q7Z2K6 904 aa19.96■□□□□ 0.79
PTCD3-220ENST00000627371 EFL1Q7Z2Z2 1120 aaKnown RBP19.96■□□□□ 0.79
PTCD3-220ENST00000627371 CCNJLQ8IV13 435 aa19.96■□□□□ 0.79
PTCD3-220ENST00000627371 CLDN19Q8N6F1 224 aa19.96■□□□□ 0.79
PTCD3-220ENST00000627371 OR6C4Q8NGE1 309 aa19.96■□□□□ 0.79
PTCD3-220ENST00000627371 GPR150Q8NGU9 434 aa19.96■□□□□ 0.79
PTCD3-220ENST00000627371 IFI44Q8TCB0 444 aa19.96■□□□□ 0.79
PTCD3-220ENST00000627371 PATE1Q8WXA2 126 aa19.96■□□□□ 0.79
PTCD3-220ENST00000627371 FAM169AQ9Y6X4 670 aa19.96■□□□□ 0.79
PTCD3-220ENST00000627371 CPED1A4D0V7 1026 aa19.95■□□□□ 0.78
PTCD3-220ENST00000627371 MGAT4DA6NG13 374 aa19.95■□□□□ 0.78
PTCD3-220ENST00000627371 GOLGA8KD6RF30 607 aa19.95■□□□□ 0.78
PTCD3-220ENST00000627371 E7ESA3 106 aa19.95■□□□□ 0.78
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms