RNA–Protein interactions for RNA: ENST00000617339.4

SHROOM1-208, Transcript of shroom family member 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SHROOM1, Length 3,638 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1-208ENST00000617339 YIPF1Q9Y548 306 aa14.34□□□□□ -0.11
SHROOM1-208ENST00000617339 COPG1Q9Y678 874 aaKnown RBP14.34□□□□□ -0.11
SHROOM1-208ENST00000617339 RNF103-CHMP3A0A140T963 221 aa14.34□□□□□ -0.11
SHROOM1-208ENST00000617339 A8MU76 341 aa14.34□□□□□ -0.11
SHROOM1-208ENST00000617339 SOCS2O14508 198 aa14.34□□□□□ -0.11
SHROOM1-208ENST00000617339 HTRA2O43464 458 aaPredicted RBP14.34□□□□□ -0.11
SHROOM1-208ENST00000617339 EEF1B2P24534 225 aaKnown RBP14.34□□□□□ -0.11
SHROOM1-208ENST00000617339 POU4F1Q01851 419 aa14.34□□□□□ -0.11
SHROOM1-208ENST00000617339 PMS2P3Q13401 168 aa14.34□□□□□ -0.11
SHROOM1-208ENST00000617339 OR4D1Q15615 310 aa14.34□□□□□ -0.11
SHROOM1-208ENST00000617339 RBBP7Q16576 425 aa14.34□□□□□ -0.11
SHROOM1-208ENST00000617339 PRKD2Q9BZL6 878 aa14.34□□□□□ -0.11
SHROOM1-208ENST00000617339 ZDHHC4Q9NPG8 344 aa14.34□□□□□ -0.11
SHROOM1-208ENST00000617339 CD274Q9NZQ7 290 aa14.34□□□□□ -0.11
SHROOM1-208ENST00000617339 CORINQ9Y5Q5 1042 aa14.34□□□□□ -0.11
SHROOM1-208ENST00000617339 E7ENX8 843 aa14.34□□□□□ -0.11
SHROOM1-208ENST00000617339 NR5A2O00482 541 aa14.34□□□□□ -0.11
SHROOM1-208ENST00000617339 OXSR1O95747 527 aaPredicted RBP14.34□□□□□ -0.11
SHROOM1-208ENST00000617339 MAP4P27816 1152 aaKnown RBP14.34□□□□□ -0.11
SHROOM1-208ENST00000617339 HOXD9P28356 352 aaPredicted RBP14.34□□□□□ -0.11
SHROOM1-208ENST00000617339 CSKP41240 450 aa14.34□□□□□ -0.11
SHROOM1-208ENST00000617339 TCEA2Q15560 299 aa14.34□□□□□ -0.11
SHROOM1-208ENST00000617339 GALNT18Q6P9A2 607 aa14.34□□□□□ -0.11
SHROOM1-208ENST00000617339 PGAM4Q8N0Y7 254 aa14.34□□□□□ -0.11
SHROOM1-208ENST00000617339 MTFMTQ96DP5 389 aaKnown RBP14.34□□□□□ -0.11
SHROOM1-208ENST00000617339 C3orf30Q96M34 536 aa14.34□□□□□ -0.11
SHROOM1-208ENST00000617339 NEURL2Q9BR09 285 aa14.34□□□□□ -0.11
SHROOM1-208ENST00000617339 POLR3BQ9NW08 1133 aaPredicted RBP14.34□□□□□ -0.11
SHROOM1-208ENST00000617339 CD84Q9UIB8 345 aa14.34□□□□□ -0.11
SHROOM1-208ENST00000617339 MOSPD1Q9UJG1 213 aa14.34□□□□□ -0.11
SHROOM1-208ENST00000617339 C2orf81A6NN90 581 aa14.33□□□□□ -0.11
SHROOM1-208ENST00000617339 UBDO15205 165 aa14.33□□□□□ -0.11
SHROOM1-208ENST00000617339 KDM1AO60341 852 aa14.33□□□□□ -0.11
SHROOM1-208ENST00000617339 ZNF135P52742 658 aaPredicted RBP14.33□□□□□ -0.11
SHROOM1-208ENST00000617339 PSME3P61289 254 aa14.33□□□□□ -0.11
SHROOM1-208ENST00000617339 ZXDBP98169 803 aa14.33□□□□□ -0.11
SHROOM1-208ENST00000617339 CAPRIN1Q14444 709 aaKnown RBP14.33□□□□□ -0.11
SHROOM1-208ENST00000617339 TRIM16LQ309B1 348 aa14.33□□□□□ -0.11
SHROOM1-208ENST00000617339 SLC39A5Q6ZMH5 540 aa14.33□□□□□ -0.11
SHROOM1-208ENST00000617339 SLC15A4Q8N697 577 aa14.33□□□□□ -0.11
SHROOM1-208ENST00000617339 RP9Q8TA86 221 aaKnown RBP14.33□□□□□ -0.11
SHROOM1-208ENST00000617339 ZNF461Q8TAF7 563 aa14.33□□□□□ -0.11
SHROOM1-208ENST00000617339 HACD3Q9P035 362 aa14.33□□□□□ -0.11
SHROOM1-208ENST00000617339 VPS51Q9UID3 782 aa14.33□□□□□ -0.11
SHROOM1-208ENST00000617339 TRAF6Q9Y4K3 522 aa14.33□□□□□ -0.11
SHROOM1-208ENST00000617339 A0A1W2PQ67 120 aa14.33□□□□□ -0.12
SHROOM1-208ENST00000617339 AP3B1O00203 1094 aa14.33□□□□□ -0.12
SHROOM1-208ENST00000617339 NOL3O60936 208 aaKnown RBP14.33□□□□□ -0.12
SHROOM1-208ENST00000617339 PRDX6P30041 224 aa14.33□□□□□ -0.12
SHROOM1-208ENST00000617339 BMXP51813 675 aa14.33□□□□□ -0.12
SHROOM1-208ENST00000617339 FOXD4Q12950 439 aaPredicted RBP14.33□□□□□ -0.12
SHROOM1-208ENST00000617339 CARTPTQ16568 116 aa14.33□□□□□ -0.12
SHROOM1-208ENST00000617339 PARP15Q460N3 678 aa14.33□□□□□ -0.12
SHROOM1-208ENST00000617339 FBXL20Q96IG2 436 aa14.33□□□□□ -0.12
SHROOM1-208ENST00000617339 MTG2Q9H4K7 406 aa14.33□□□□□ -0.12
SHROOM1-208ENST00000617339 HCFC1R1Q9NWW0 138 aa14.33□□□□□ -0.12
SHROOM1-208ENST00000617339 CFAP97Q9P2B7 532 aa14.33□□□□□ -0.12
SHROOM1-208ENST00000617339 MID2Q9UJV3 735 aa14.33□□□□□ -0.12
SHROOM1-208ENST00000617339 MYOFQ9NZM1 2061 aa14.33□□□□□ -0.12
SHROOM1-208ENST00000617339 A0A087WXM4 84 aa14.33□□□□□ -0.12
SHROOM1-208ENST00000617339 H3BMQ9 156 aa14.33□□□□□ -0.12
SHROOM1-208ENST00000617339 UBFD1O14562 309 aaKnown RBP14.33□□□□□ -0.12
SHROOM1-208ENST00000617339 MTX2O75431 263 aa14.33□□□□□ -0.12
SHROOM1-208ENST00000617339 SKIV2LQ15477 1246 aaKnown RBP14.33□□□□□ -0.12
SHROOM1-208ENST00000617339 ISCA2Q86U28 154 aa14.33□□□□□ -0.12
SHROOM1-208ENST00000617339 CARM1Q86X55 608 aa14.33□□□□□ -0.12
SHROOM1-208ENST00000617339 ZC3H7AQ8IWR0 971 aaKnown RBP14.33□□□□□ -0.12
SHROOM1-208ENST00000617339 CMTM8Q8IZV2 173 aa14.33□□□□□ -0.12
SHROOM1-208ENST00000617339 CBR4Q8N4T8 237 aa14.33□□□□□ -0.12
SHROOM1-208ENST00000617339 KDM1BQ8NB78 822 aa14.33□□□□□ -0.12
SHROOM1-208ENST00000617339 CDC26Q8NHZ8 85 aa14.33□□□□□ -0.12
SHROOM1-208ENST00000617339 TBC1D15Q8TC07 691 aa14.33□□□□□ -0.12
SHROOM1-208ENST00000617339 COG8Q96MW5 612 aa14.33□□□□□ -0.12
SHROOM1-208ENST00000617339 EGFL7Q9UHF1 273 aa14.33□□□□□ -0.12
SHROOM1-208ENST00000617339 SLC8A2Q9UPR5 921 aa14.33□□□□□ -0.12
SHROOM1-208ENST00000617339 SLC30A1Q9Y6M5 507 aa14.33□□□□□ -0.12
SHROOM1-208ENST00000617339 CASP8AP2Q9UKL3 1982 aa14.33□□□□□ -0.12
SHROOM1-208ENST00000617339 INPPL1O15357 1258 aa14.32□□□□□ -0.12
SHROOM1-208ENST00000617339 NDUFB5O43674 189 aa14.32□□□□□ -0.12
SHROOM1-208ENST00000617339 EEF1DP29692 281 aaKnown RBP14.32□□□□□ -0.12
SHROOM1-208ENST00000617339 GDF5P43026 501 aa14.32□□□□□ -0.12
SHROOM1-208ENST00000617339 PLCL1Q15111 1095 aa14.32□□□□□ -0.12
SHROOM1-208ENST00000617339 SLC2A7Q6PXP3 512 aa14.32□□□□□ -0.12
SHROOM1-208ENST00000617339 LYSMD3Q7Z3D4 306 aa14.32□□□□□ -0.12
SHROOM1-208ENST00000617339 ZNF683Q8IZ20 524 aa14.32□□□□□ -0.12
SHROOM1-208ENST00000617339 CDYL2Q8N8U2 506 aa14.32□□□□□ -0.12
SHROOM1-208ENST00000617339 EEF1AKMT1Q8WVE0 214 aa14.32□□□□□ -0.12
SHROOM1-208ENST00000617339 TCF25Q9BQ70 676 aa14.32□□□□□ -0.12
SHROOM1-208ENST00000617339 RPF2Q9H7B2 306 aaKnown RBP14.32□□□□□ -0.12
SHROOM1-208ENST00000617339 ZNF334Q9HCZ1 680 aaPredicted RBP14.32□□□□□ -0.12
SHROOM1-208ENST00000617339 VPS45Q9NRW7 570 aa14.32□□□□□ -0.12
SHROOM1-208ENST00000617339 IKZF3Q9UKT9 509 aa14.32□□□□□ -0.12
SHROOM1-208ENST00000617339 PADI4Q9UM07 663 aa14.32□□□□□ -0.12
SHROOM1-208ENST00000617339 FFAR3O14843 346 aa14.32□□□□□ -0.12
SHROOM1-208ENST00000617339 GPR42O15529 346 aa14.32□□□□□ -0.12
SHROOM1-208ENST00000617339 RFPL2O75678 378 aa14.32□□□□□ -0.12
SHROOM1-208ENST00000617339 NDST3O95803 873 aa14.32□□□□□ -0.12
SHROOM1-208ENST00000617339 RCVRNP35243 200 aa14.32□□□□□ -0.12
SHROOM1-208ENST00000617339 FASTKQ14296 549 aaKnown RBP14.32□□□□□ -0.12
SHROOM1-208ENST00000617339 ZBED5Q49AG3 693 aa14.32□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 59.7 ms