RNA–Protein interactions for RNA: ENST00000611852.4

CCDC28A-202, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,505 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-202ENST00000611852 NOBOXO60393 691 aa16.29■□□□□ 0.2
CCDC28A-202ENST00000611852 BANF1O75531 89 aa16.29■□□□□ 0.2
CCDC28A-202ENST00000611852 FTH1P19P0C7X4 201 aa16.29■□□□□ 0.2
CCDC28A-202ENST00000611852 CTAGE8P0CG41 777 aa16.29■□□□□ 0.2
CCDC28A-202ENST00000611852 ACP1P24666 158 aa16.29■□□□□ 0.2
CCDC28A-202ENST00000611852 ARCN1P48444 511 aaKnown RBP16.29■□□□□ 0.2
CCDC28A-202ENST00000611852 ACADVLP49748 655 aa16.29■□□□□ 0.2
CCDC28A-202ENST00000611852 CLCNKAP51800 687 aa16.29■□□□□ 0.2
CCDC28A-202ENST00000611852 SEMA3AQ14563 771 aa16.29■□□□□ 0.2
CCDC28A-202ENST00000611852 ITIH4Q14624 930 aa16.29■□□□□ 0.2
CCDC28A-202ENST00000611852 BBS9Q3SYG4 887 aa16.29■□□□□ 0.2
CCDC28A-202ENST00000611852 DNAJC21Q5F1R6 531 aaKnown RBP16.29■□□□□ 0.2
CCDC28A-202ENST00000611852 C8orf74Q6P047 294 aa16.29■□□□□ 0.2
CCDC28A-202ENST00000611852 CERS6Q6ZMG9 384 aa16.29■□□□□ 0.2
CCDC28A-202ENST00000611852 CTAGE6Q86UF2 777 aa16.29■□□□□ 0.2
CCDC28A-202ENST00000611852 CTAGE4Q8IX94 777 aa16.29■□□□□ 0.2
CCDC28A-202ENST00000611852 MMGT1Q8N4V1 131 aa16.29■□□□□ 0.2
CCDC28A-202ENST00000611852 ZDHHC1Q8WTX9 485 aa16.29■□□□□ 0.2
CCDC28A-202ENST00000611852 GLMNQ92990 594 aa16.29■□□□□ 0.2
CCDC28A-202ENST00000611852 ZNF669Q96BR6 464 aaPredicted RBP16.29■□□□□ 0.2
CCDC28A-202ENST00000611852 CATSPERZQ9NTU4 200 aa16.29■□□□□ 0.2
CCDC28A-202ENST00000611852 GRHL1Q9NZI5 618 aa16.29■□□□□ 0.2
CCDC28A-202ENST00000611852 MARCH4Q9P2E8 410 aaPredicted RBP16.29■□□□□ 0.2
CCDC28A-202ENST00000611852 DNMT3AQ9Y6K1 912 aaPredicted RBP16.29■□□□□ 0.2
CCDC28A-202ENST00000611852 CACNA1AO00555 2505 aa16.29■□□□□ 0.2
CCDC28A-202ENST00000611852 ZCWPW2A0A1B0GU75 182 aa16.29■□□□□ 0.2
CCDC28A-202ENST00000611852 CD3EAPO15446 510 aaKnown RBP16.29■□□□□ 0.2
CCDC28A-202ENST00000611852 POP7O75817 140 aaKnown RBP16.29■□□□□ 0.2
CCDC28A-202ENST00000611852 USP1O94782 785 aa16.29■□□□□ 0.2
CCDC28A-202ENST00000611852 DKK1O94907 266 aa16.29■□□□□ 0.2
CCDC28A-202ENST00000611852 PAMP19021 973 aa16.29■□□□□ 0.2
CCDC28A-202ENST00000611852 RPIAP49247 311 aa16.29■□□□□ 0.2
CCDC28A-202ENST00000611852 DUSP3P51452 185 aaPredicted RBP16.29■□□□□ 0.2
CCDC28A-202ENST00000611852 CALCOCO2Q13137 446 aa16.29■□□□□ 0.2
CCDC28A-202ENST00000611852 NR0B2Q15466 257 aa16.29■□□□□ 0.2
CCDC28A-202ENST00000611852 HIF1AQ16665 826 aa16.29■□□□□ 0.2
CCDC28A-202ENST00000611852 BCL7AQ4VC05 210 aa16.29■□□□□ 0.2
CCDC28A-202ENST00000611852 LYPLAL1Q5VWZ2 237 aa16.29■□□□□ 0.2
CCDC28A-202ENST00000611852 NAGSQ8N159 534 aa16.29■□□□□ 0.2
CCDC28A-202ENST00000611852 BEND7Q8N7W2 519 aaPredicted RBP16.29■□□□□ 0.2
CCDC28A-202ENST00000611852 NOA1Q8NC60 698 aaKnown RBP16.29■□□□□ 0.2
CCDC28A-202ENST00000611852 TTC1Q99614 292 aa16.29■□□□□ 0.2
CCDC28A-202ENST00000611852 EBNA1BP2Q99848 306 aaKnown RBP16.29■□□□□ 0.2
CCDC28A-202ENST00000611852 TBC1D29Q9UFV1 150 aa16.29■□□□□ 0.2
CCDC28A-202ENST00000611852 PADI4Q9UM07 663 aa16.29■□□□□ 0.2
CCDC28A-202ENST00000611852 APOBEC2Q9Y235 224 aaKnown RBP16.29■□□□□ 0.2
CCDC28A-202ENST00000611852 DNAJC16Q9Y2G8 782 aa16.29■□□□□ 0.2
CCDC28A-202ENST00000611852 SPEGQ15772 3267 aa16.28■□□□□ 0.2
CCDC28A-202ENST00000611852 EME2A4GXA9 379 aaPredicted RBP16.28■□□□□ 0.2
CCDC28A-202ENST00000611852 A6NCN8 305 aa16.28■□□□□ 0.2
CCDC28A-202ENST00000611852 GOLGA8KD6RF30 607 aa16.28■□□□□ 0.2
CCDC28A-202ENST00000611852 GOLGA8TH3BQL2 631 aa16.28■□□□□ 0.2
CCDC28A-202ENST00000611852 EML2O95834 649 aa16.28■□□□□ 0.2
CCDC28A-202ENST00000611852 PGAM1P18669 254 aa16.28■□□□□ 0.2
CCDC28A-202ENST00000611852 NSG1P42857 185 aa16.28■□□□□ 0.2
CCDC28A-202ENST00000611852 PRLHRP49683 370 aa16.28■□□□□ 0.2
CCDC28A-202ENST00000611852 ARL4CP56559 192 aa16.28■□□□□ 0.2
CCDC28A-202ENST00000611852 SLC7A5Q01650 507 aa16.28■□□□□ 0.2
CCDC28A-202ENST00000611852 C14orf28Q4W4Y0 310 aa16.28■□□□□ 0.2
CCDC28A-202ENST00000611852 AARS2Q5JTZ9 985 aaKnown RBP16.28■□□□□ 0.2
CCDC28A-202ENST00000611852 N4BP2L1Q5TBK1 243 aaPredicted RBP16.28■□□□□ 0.2
CCDC28A-202ENST00000611852 GUSBP11Q6P575 273 aa16.28■□□□□ 0.2
CCDC28A-202ENST00000611852 PACS1Q6VY07 963 aa16.28■□□□□ 0.2
CCDC28A-202ENST00000611852 AMZ2Q86W34 360 aa16.28■□□□□ 0.2
CCDC28A-202ENST00000611852 C17orf82Q86X59 251 aaPredicted RBP16.28■□□□□ 0.2
CCDC28A-202ENST00000611852 IGDCC3Q8IVU1 814 aa16.28■□□□□ 0.2
CCDC28A-202ENST00000611852 CLDN19Q8N6F1 224 aa16.28■□□□□ 0.2
CCDC28A-202ENST00000611852 PATE1Q8WXA2 126 aa16.28■□□□□ 0.2
CCDC28A-202ENST00000611852 LINC00615Q96LM1 132 aaPredicted RBP16.28■□□□□ 0.2
CCDC28A-202ENST00000611852 OSGEPL1Q9H4B0 414 aa16.28■□□□□ 0.2
CCDC28A-202ENST00000611852 EVA1BQ9NVM1 165 aa16.28■□□□□ 0.2
CCDC28A-202ENST00000611852 PCDHGA1Q9Y5H4 931 aa16.28■□□□□ 0.2
CCDC28A-202ENST00000611852 ASXL3Q9C0F0 2248 aa16.27■□□□□ 0.2
CCDC28A-202ENST00000611852 CPED1A4D0V7 1026 aa16.27■□□□□ 0.2
CCDC28A-202ENST00000611852 OR1I1O60431 355 aa16.27■□□□□ 0.2
CCDC28A-202ENST00000611852 KCNJ13O60928 360 aa16.27■□□□□ 0.2
CCDC28A-202ENST00000611852 POLBP06746 335 aa16.27■□□□□ 0.2
CCDC28A-202ENST00000611852 VCLP18206 1134 aa16.27■□□□□ 0.2
CCDC28A-202ENST00000611852 PPARGP37231 505 aaPredicted RBP16.27■□□□□ 0.2
CCDC28A-202ENST00000611852 DRG2P55039 364 aaKnown RBP16.27■□□□□ 0.2
CCDC28A-202ENST00000611852 DMPKQ09013 629 aa16.27■□□□□ 0.2
CCDC28A-202ENST00000611852 ILKQ13418 452 aa16.27■□□□□ 0.2
CCDC28A-202ENST00000611852 HLTFQ14527 1009 aaKnown RBP eCLIP16.27■□□□□ 0.2
CCDC28A-202ENST00000611852 TRADDQ15628 312 aa16.27■□□□□ 0.2
CCDC28A-202ENST00000611852 SMAD1Q15797 465 aaKnown RBP16.27■□□□□ 0.2
CCDC28A-202ENST00000611852 LDB1Q86U70 411 aaPredicted RBP16.27■□□□□ 0.2
CCDC28A-202ENST00000611852 CEP112Q8N8E3 955 aa16.27■□□□□ 0.2
CCDC28A-202ENST00000611852 ART4Q93070 314 aa16.27■□□□□ 0.2
CCDC28A-202ENST00000611852 LRRC39Q96DD0 335 aa16.27■□□□□ 0.2
CCDC28A-202ENST00000611852 WDR83Q9BRX9 315 aaKnown RBP16.27■□□□□ 0.2
CCDC28A-202ENST00000611852 NAT9Q9BTE0 207 aa16.27■□□□□ 0.2
CCDC28A-202ENST00000611852 PRDM8Q9NQV8 689 aa16.27■□□□□ 0.2
CCDC28A-202ENST00000611852 IL1RAPL1Q9NZN1 696 aa16.27■□□□□ 0.2
CCDC28A-202ENST00000611852 TEX264Q9Y6I9 313 aa16.27■□□□□ 0.2
CCDC28A-202ENST00000611852 PRSS21Q9Y6M0 314 aa16.27■□□□□ 0.2
CCDC28A-202ENST00000611852 FAM169AQ9Y6X4 670 aa16.27■□□□□ 0.2
CCDC28A-202ENST00000611852 PIKFYVEQ9Y2I7 2098 aa16.27■□□□□ 0.2
CCDC28A-202ENST00000611852 KLHL33A6NCF5 533 aa16.26■□□□□ 0.19
CCDC28A-202ENST00000611852 MGAT4DA6NG13 374 aa16.26■□□□□ 0.19
CCDC28A-202ENST00000611852 E7ESA3 106 aa16.26■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms