RNA–Protein interactions for RNA: ENST00000599716.5

SHKBP1-220, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 572 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-220ENST00000599716 ARGFXA6NJG6 315 aa8.49□□□□□ -1.05
SHKBP1-220ENST00000599716 ANKRD66B4E2M5 251 aa8.49□□□□□ -1.05
SHKBP1-220ENST00000599716 CREG1O75629 220 aa8.49□□□□□ -1.05
SHKBP1-220ENST00000599716 RFPL1O75677 317 aa8.49□□□□□ -1.05
SHKBP1-220ENST00000599716 MTA2O94776 668 aa8.49□□□□□ -1.05
SHKBP1-220ENST00000599716 PYGLP06737 847 aa8.49□□□□□ -1.05
SHKBP1-220ENST00000599716 ANKRD34CP0C6C1 535 aa8.49□□□□□ -1.05
SHKBP1-220ENST00000599716 FAM228BP0C875 321 aa8.49□□□□□ -1.05
SHKBP1-220ENST00000599716 EBLN1P0CF75 366 aa8.49□□□□□ -1.05
SHKBP1-220ENST00000599716 ZNF7P17097 686 aaPredicted RBP8.49□□□□□ -1.05
SHKBP1-220ENST00000599716 BPIP17213 487 aa8.49□□□□□ -1.05
SHKBP1-220ENST00000599716 XRCC1P18887 633 aaPredicted RBP8.49□□□□□ -1.05
SHKBP1-220ENST00000599716 PRKCIP41743 596 aa8.49□□□□□ -1.05
SHKBP1-220ENST00000599716 NOP2P46087 812 aaKnown RBP8.49□□□□□ -1.05
SHKBP1-220ENST00000599716 ARCN1P48444 511 aaKnown RBP8.49□□□□□ -1.05
SHKBP1-220ENST00000599716 CCL11P51671 97 aa8.49□□□□□ -1.05
SHKBP1-220ENST00000599716 MC1RQ01726 317 aa8.49□□□□□ -1.05
SHKBP1-220ENST00000599716 TYRO3Q06418 890 aa8.49□□□□□ -1.05
SHKBP1-220ENST00000599716 MRPL49Q13405 166 aaKnown RBP8.49□□□□□ -1.05
SHKBP1-220ENST00000599716 IL10RAQ13651 578 aa8.49□□□□□ -1.05
SHKBP1-220ENST00000599716 PIGHQ14442 188 aaPredicted RBP8.49□□□□□ -1.05
SHKBP1-220ENST00000599716 PAFAH1B3Q15102 231 aaKnown RBP8.49□□□□□ -1.05
SHKBP1-220ENST00000599716 IFI16Q16666 785 aaKnown RBP8.49□□□□□ -1.05
SHKBP1-220ENST00000599716 ANO6Q4KMQ2 910 aa8.49□□□□□ -1.05
SHKBP1-220ENST00000599716 ZNF569Q5MCW4 686 aa8.49□□□□□ -1.05
SHKBP1-220ENST00000599716 HGSNATQ68CP4 663 aa8.49□□□□□ -1.05
SHKBP1-220ENST00000599716 CAPRIN2Q6IMN6 1127 aaKnown RBP8.49□□□□□ -1.05
SHKBP1-220ENST00000599716 LCN10Q6JVE6 187 aa8.49□□□□□ -1.05
SHKBP1-220ENST00000599716 TCTN3Q6NUS6 607 aa8.49□□□□□ -1.05
SHKBP1-220ENST00000599716 DUS1LQ6P1R4 473 aaKnown RBP8.49□□□□□ -1.05
SHKBP1-220ENST00000599716 NPNTQ6UXI9 565 aa8.49□□□□□ -1.05
SHKBP1-220ENST00000599716 FAM83HQ6ZRV2 1179 aaPredicted RBP8.49□□□□□ -1.05
SHKBP1-220ENST00000599716 MICALCLQ6ZW33 695 aa8.49□□□□□ -1.05
SHKBP1-220ENST00000599716 SPATA22Q8NHS9 363 aa8.49□□□□□ -1.05
SHKBP1-220ENST00000599716 CPT1CQ8TCG5 803 aa8.49□□□□□ -1.05
SHKBP1-220ENST00000599716 CPLX3Q8WVH0 158 aa8.49□□□□□ -1.05
SHKBP1-220ENST00000599716 GLYATL1Q969I3 302 aa8.49□□□□□ -1.05
SHKBP1-220ENST00000599716 LYSMD1Q96S90 227 aa8.49□□□□□ -1.05
SHKBP1-220ENST00000599716 NRTNQ99748 197 aa8.49□□□□□ -1.05
SHKBP1-220ENST00000599716 MFRPQ9BY79 579 aa8.49□□□□□ -1.05
SHKBP1-220ENST00000599716 LDHAL6BQ9BYZ2 381 aaPredicted RBP8.49□□□□□ -1.05
SHKBP1-220ENST00000599716 TRIT1Q9H3H1 467 aaKnown RBP8.49□□□□□ -1.05
SHKBP1-220ENST00000599716 ZFYVE1Q9HBF4 777 aa8.49□□□□□ -1.05
SHKBP1-220ENST00000599716 LHX9Q9NQ69 397 aa8.49□□□□□ -1.05
SHKBP1-220ENST00000599716 UBP1Q9NZI7 540 aa8.49□□□□□ -1.05
SHKBP1-220ENST00000599716 FAM8A1Q9UBU6 413 aa8.49□□□□□ -1.05
SHKBP1-220ENST00000599716 ZNF711Q9Y462 761 aa8.49□□□□□ -1.05
SHKBP1-220ENST00000599716 SPO11Q9Y5K1 396 aa8.49□□□□□ -1.05
SHKBP1-220ENST00000599716 CFAP20Q9Y6A4 193 aaKnown RBP8.49□□□□□ -1.05
SHKBP1-220ENST00000599716 MAP1AP78559 2803 aaPredicted RBP8.49□□□□□ -1.05
SHKBP1-220ENST00000599716 PCSK5Q92824 1860 aa8.49□□□□□ -1.05
SHKBP1-220ENST00000599716 BUD23O43709 281 aaKnown RBP8.48□□□□□ -1.05
SHKBP1-220ENST00000599716 MT-CYBP00156 380 aaPredicted RBP8.48□□□□□ -1.05
SHKBP1-220ENST00000599716 CYP1A2P05177 515 aa8.48□□□□□ -1.05
SHKBP1-220ENST00000599716 MYBL1P10243 752 aa8.48□□□□□ -1.05
SHKBP1-220ENST00000599716 CCNCP24863 283 aa8.48□□□□□ -1.05
SHKBP1-220ENST00000599716 PBLDP30039 288 aaPredicted RBP8.48□□□□□ -1.05
SHKBP1-220ENST00000599716 CAPZBP47756 277 aa8.48□□□□□ -1.05
SHKBP1-220ENST00000599716 PMS2P54278 862 aa8.48□□□□□ -1.05
SHKBP1-220ENST00000599716 TUBB3Q13509 450 aa8.48□□□□□ -1.05
SHKBP1-220ENST00000599716 RAPSNQ13702 412 aa8.48□□□□□ -1.05
SHKBP1-220ENST00000599716 MAP7Q14244 749 aa8.48□□□□□ -1.05
SHKBP1-220ENST00000599716 LLGL1Q15334 1064 aa8.48□□□□□ -1.05
SHKBP1-220ENST00000599716 NFKBIBQ15653 356 aa8.48□□□□□ -1.05
SHKBP1-220ENST00000599716 GPR19Q15760 415 aa8.48□□□□□ -1.05
SHKBP1-220ENST00000599716 EIF2S3LQ2VIR3 472 aaKnown RBP8.48□□□□□ -1.05
SHKBP1-220ENST00000599716 ATP13A5Q4VNC0 1218 aa8.48□□□□□ -1.05
SHKBP1-220ENST00000599716 PPP1R2P3Q6NXS1 205 aa8.48□□□□□ -1.05
SHKBP1-220ENST00000599716 C11orf96Q7Z7L8 435 aa8.48□□□□□ -1.05
SHKBP1-220ENST00000599716 LRRTM4Q86VH4 590 aa8.48□□□□□ -1.05
SHKBP1-220ENST00000599716 PPP1R3BQ86XI6 285 aa8.48□□□□□ -1.05
SHKBP1-220ENST00000599716 NIPA2Q8N8Q9 360 aa8.48□□□□□ -1.05
SHKBP1-220ENST00000599716 KCTD6Q8NC69 237 aa8.48□□□□□ -1.05
SHKBP1-220ENST00000599716 FAM71BQ8TC56 605 aa8.48□□□□□ -1.05
SHKBP1-220ENST00000599716 CCHCR1Q8TD31 782 aa8.48□□□□□ -1.05
SHKBP1-220ENST00000599716 RAPGEF5Q92565 580 aa8.48□□□□□ -1.05
SHKBP1-220ENST00000599716 CXorf40BQ96DE9 158 aa8.48□□□□□ -1.05
SHKBP1-220ENST00000599716 TRIM11Q96F44 468 aa8.48□□□□□ -1.05
SHKBP1-220ENST00000599716 AGAP3Q96P47 875 aa8.48□□□□□ -1.05
SHKBP1-220ENST00000599716 TSGA13Q96PP4 275 aa8.48□□□□□ -1.05
SHKBP1-220ENST00000599716 TRIB3Q96RU7 358 aa8.48□□□□□ -1.05
SHKBP1-220ENST00000599716 MAP3K3Q99759 626 aa8.48□□□□□ -1.05
SHKBP1-220ENST00000599716 PACSIN1Q9BY11 444 aa8.48□□□□□ -1.05
SHKBP1-220ENST00000599716 RMI1Q9H9A7 625 aa8.48□□□□□ -1.05
SHKBP1-220ENST00000599716 TRIM39Q9HCM9 518 aa8.48□□□□□ -1.05
SHKBP1-220ENST00000599716 SLC40A1Q9NP59 571 aa8.48□□□□□ -1.05
SHKBP1-220ENST00000599716 MAP10Q9P2G4 905 aa8.48□□□□□ -1.05
SHKBP1-220ENST00000599716 IP6K2Q9UHH9 426 aa8.48□□□□□ -1.05
SHKBP1-220ENST00000599716 PADI1Q9ULC6 663 aa8.48□□□□□ -1.05
SHKBP1-220ENST00000599716 MYO6Q9UM54 1294 aa8.48□□□□□ -1.05
SHKBP1-220ENST00000599716 HEY1Q9Y5J3 304 aa8.48□□□□□ -1.05
SHKBP1-220ENST00000599716 DCHS2Q6V1P9 2916 aa8.48□□□□□ -1.05
SHKBP1-220ENST00000599716 A6NL46 340 aa8.47□□□□□ -1.05
SHKBP1-220ENST00000599716 OR5K4A6NMS3 321 aa8.47□□□□□ -1.05
SHKBP1-220ENST00000599716 CHUKO15111 745 aa8.47□□□□□ -1.05
SHKBP1-220ENST00000599716 KRT86O43790 486 aa8.47□□□□□ -1.05
SHKBP1-220ENST00000599716 UGT1A9O60656 530 aa8.47□□□□□ -1.05
SHKBP1-220ENST00000599716 VPS4BO75351 444 aa8.47□□□□□ -1.05
SHKBP1-220ENST00000599716 CDK14O94921 469 aa8.47□□□□□ -1.05
SHKBP1-220ENST00000599716 LCA5LO95447 670 aa8.47□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms