RNA–Protein interactions for RNA: ENST00000599322.5

LIG1-218, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 620 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-218ENST00000599322 GPRC6AQ5T6X5 926 aa13.93□□□□□ -0.18
LIG1-218ENST00000599322 TMEM220Q6QAJ8 160 aa13.93□□□□□ -0.18
LIG1-218ENST00000599322 RBM12BQ8IXT5 1001 aaKnown RBP13.93□□□□□ -0.18
LIG1-218ENST00000599322 OR4D9Q8NGE8 314 aa13.93□□□□□ -0.18
LIG1-218ENST00000599322 C1orf54Q8WWF1 131 aa13.93□□□□□ -0.18
LIG1-218ENST00000599322 ATG4AQ8WYN0 398 aa13.93□□□□□ -0.18
LIG1-218ENST00000599322 TBRG4Q969Z0 631 aaKnown RBP eCLIP13.93□□□□□ -0.18
LIG1-218ENST00000599322 DPH1Q9BZG8 443 aa13.93□□□□□ -0.18
LIG1-218ENST00000599322 VPS37BQ9H9H4 285 aa13.93□□□□□ -0.18
LIG1-218ENST00000599322 RDH14Q9HBH5 336 aa13.93□□□□□ -0.18
LIG1-218ENST00000599322 PRDM8Q9NQV8 689 aa13.93□□□□□ -0.18
LIG1-218ENST00000599322 SMOXQ9NWM0 555 aa13.93□□□□□ -0.18
LIG1-218ENST00000599322 CPNE7Q9UBL6 633 aa13.93□□□□□ -0.18
LIG1-218ENST00000599322 PISDQ9UG56 409 aa13.93□□□□□ -0.18
LIG1-218ENST00000599322 COL27A1Q8IZC6 1860 aaPredicted RBP13.93□□□□□ -0.18
LIG1-218ENST00000599322 RP1P56715 2156 aa13.92□□□□□ -0.18
LIG1-218ENST00000599322 IGHV1OR21-1A0A087WYE8 117 aa13.92□□□□□ -0.18
LIG1-218ENST00000599322 TCRBV7S2A1N4TA0A589 114 aa13.92□□□□□ -0.18
LIG1-218ENST00000599322 AP3B1O00203 1094 aa13.92□□□□□ -0.18
LIG1-218ENST00000599322 HGSO14964 777 aaPredicted RBP13.92□□□□□ -0.18
LIG1-218ENST00000599322 TLX3O43711 291 aaPredicted RBP13.92□□□□□ -0.18
LIG1-218ENST00000599322 METTL18O95568 372 aa13.92□□□□□ -0.18
LIG1-218ENST00000599322 AMD1P17707 334 aa13.92□□□□□ -0.18
LIG1-218ENST00000599322 XRCC1P18887 633 aaPredicted RBP13.92□□□□□ -0.18
LIG1-218ENST00000599322 CD1CP29017 333 aa13.92□□□□□ -0.18
LIG1-218ENST00000599322 CCZ1BP86790 482 aa13.92□□□□□ -0.18
LIG1-218ENST00000599322 CCZ1P86791 482 aaPredicted RBP13.92□□□□□ -0.18
LIG1-218ENST00000599322 ZFP36L1Q07352 338 aaKnown RBP13.92□□□□□ -0.18
LIG1-218ENST00000599322 CDH17Q12864 832 aa13.92□□□□□ -0.18
LIG1-218ENST00000599322 SQSTM1Q13501 440 aa13.92□□□□□ -0.18
LIG1-218ENST00000599322 SEPT7Q16181 437 aaKnown RBP13.92□□□□□ -0.18
LIG1-218ENST00000599322 TMEM71Q6P5X7 295 aa13.92□□□□□ -0.18
LIG1-218ENST00000599322 WASH2PQ6VEQ5 465 aa13.92□□□□□ -0.18
LIG1-218ENST00000599322 TAS2R42Q7RTR8 314 aa13.92□□□□□ -0.18
LIG1-218ENST00000599322 SNX20Q7Z614 316 aa13.92□□□□□ -0.18
LIG1-218ENST00000599322 B3GNT8Q7Z7M8 397 aa13.92□□□□□ -0.18
LIG1-218ENST00000599322 TAB3Q8N5C8 712 aaPredicted RBP13.92□□□□□ -0.18
LIG1-218ENST00000599322 AGBL5Q8NDL9 886 aa13.92□□□□□ -0.18
LIG1-218ENST00000599322 STYXQ8WUJ0 223 aa13.92□□□□□ -0.18
LIG1-218ENST00000599322 NCSTNQ92542 709 aa13.92□□□□□ -0.18
LIG1-218ENST00000599322 NAF1Q96HR8 494 aaKnown RBP13.92□□□□□ -0.18
LIG1-218ENST00000599322 NAP1L3Q99457 506 aaPredicted RBP13.92□□□□□ -0.18
LIG1-218ENST00000599322 COPS8Q99627 209 aa13.92□□□□□ -0.18
LIG1-218ENST00000599322 WASH6PQ9NQA3 447 aa13.92□□□□□ -0.18
LIG1-218ENST00000599322 RAB6BQ9NRW1 208 aa13.92□□□□□ -0.18
LIG1-218ENST00000599322 POT1Q9NUX5 634 aa13.92□□□□□ -0.18
LIG1-218ENST00000599322 FKBPLQ9UIM3 349 aa13.92□□□□□ -0.18
LIG1-218ENST00000599322 PCDHB11Q9Y5F2 797 aa13.92□□□□□ -0.18
LIG1-218ENST00000599322 ST14Q9Y5Y6 855 aa13.92□□□□□ -0.18
LIG1-218ENST00000599322 PTPRQQ9UMZ3 2332 aa13.91□□□□□ -0.18
LIG1-218ENST00000599322 OR2AG2A6NM03 316 aa13.91□□□□□ -0.18
LIG1-218ENST00000599322 KLK10O43240 276 aa13.91□□□□□ -0.18
LIG1-218ENST00000599322 FGGP02679 453 aa13.91□□□□□ -0.18
LIG1-218ENST00000599322 MC4RP32245 332 aa13.91□□□□□ -0.18
LIG1-218ENST00000599322 PPARGP37231 505 aaPredicted RBP13.91□□□□□ -0.18
LIG1-218ENST00000599322 LIMK2P53671 638 aa13.91□□□□□ -0.18
LIG1-218ENST00000599322 MAPK10P53779 464 aa13.91□□□□□ -0.18
LIG1-218ENST00000599322 GDF10P55107 478 aa13.91□□□□□ -0.18
LIG1-218ENST00000599322 KRT33BQ14525 404 aa13.91□□□□□ -0.18
LIG1-218ENST00000599322 POU6F1Q14863 301 aa13.91□□□□□ -0.18
LIG1-218ENST00000599322 ZRANB3Q5FWF4 1079 aa13.91□□□□□ -0.18
LIG1-218ENST00000599322 FNBP1LQ5T0N5 605 aa13.91□□□□□ -0.18
LIG1-218ENST00000599322 CHCHD2P9Q5T1J5 151 aaPredicted RBP13.91□□□□□ -0.18
LIG1-218ENST00000599322 AGAP9Q5VTM2 703 aa13.91□□□□□ -0.18
LIG1-218ENST00000599322 NKAIN2Q5VXU1 208 aa13.91□□□□□ -0.18
LIG1-218ENST00000599322 KLHL35Q6PF15 583 aa13.91□□□□□ -0.18
LIG1-218ENST00000599322 ABRAXAS1Q6UWZ7 409 aa13.91□□□□□ -0.18
LIG1-218ENST00000599322 PLXDC1Q8IUK5 500 aa13.91□□□□□ -0.18
LIG1-218ENST00000599322 RASGEF1AQ8N9B8 481 aa13.91□□□□□ -0.18
LIG1-218ENST00000599322 RTP4Q96DX8 246 aa13.91□□□□□ -0.18
LIG1-218ENST00000599322 GORASP1Q9BQQ3 440 aa13.91□□□□□ -0.18
LIG1-218ENST00000599322 SEMA6CQ9H3T2 930 aa13.91□□□□□ -0.18
LIG1-218ENST00000599322 ACSL5Q9ULC5 683 aa13.91□□□□□ -0.18
LIG1-218ENST00000599322 DRG1Q9Y295 367 aaKnown RBP13.91□□□□□ -0.18
LIG1-218ENST00000599322 JRKLQ9Y4A0 524 aa13.91□□□□□ -0.18
LIG1-218ENST00000599322 PCDHGA7Q9Y5G6 932 aa13.91□□□□□ -0.18
LIG1-218ENST00000599322 HEATR9A2RTY3 570 aa13.9□□□□□ -0.18
LIG1-218ENST00000599322 LILRA5A6NI73 299 aa13.9□□□□□ -0.18
LIG1-218ENST00000599322 EML2O95834 649 aa13.9□□□□□ -0.18
LIG1-218ENST00000599322 TPH1P17752 444 aa13.9□□□□□ -0.18
LIG1-218ENST00000599322 RPL10P27635 214 aaKnown RBP13.9□□□□□ -0.18
LIG1-218ENST00000599322 ITPKBP27987 946 aa13.9□□□□□ -0.18
LIG1-218ENST00000599322 PBLDP30039 288 aaPredicted RBP13.9□□□□□ -0.18
LIG1-218ENST00000599322 PDX1P52945 283 aa13.9□□□□□ -0.18
LIG1-218ENST00000599322 OLIG2Q13516 323 aa13.9□□□□□ -0.18
LIG1-218ENST00000599322 GSE1Q14687 1217 aa13.9□□□□□ -0.18
LIG1-218ENST00000599322 PTPRCAPQ14761 206 aa13.9□□□□□ -0.18
LIG1-218ENST00000599322 OASLQ15646 514 aaKnown RBP13.9□□□□□ -0.18
LIG1-218ENST00000599322 SNAP47Q5SQN1 464 aa13.9□□□□□ -0.18
LIG1-218ENST00000599322 KCTD11Q693B1 232 aa13.9□□□□□ -0.18
LIG1-218ENST00000599322 WDR74Q6RFH5 385 aaPredicted RBP13.9□□□□□ -0.18
LIG1-218ENST00000599322 DET1Q7L5Y6 550 aa13.9□□□□□ -0.18
LIG1-218ENST00000599322 NLRP9Q7RTR0 991 aa13.9□□□□□ -0.18
LIG1-218ENST00000599322 ZNF761Q86XN6 746 aaPredicted RBP13.9□□□□□ -0.18
LIG1-218ENST00000599322 SLITRK4Q8IW52 837 aa13.9□□□□□ -0.18
LIG1-218ENST00000599322 KLHDC8BQ8IXV7 354 aa13.9□□□□□ -0.18
LIG1-218ENST00000599322 OR13C4Q8NGS5 318 aa13.9□□□□□ -0.18
LIG1-218ENST00000599322 PBKQ96KB5 322 aa13.9□□□□□ -0.18
LIG1-218ENST00000599322 CCDC74BQ96LY2 380 aa13.9□□□□□ -0.18
LIG1-218ENST00000599322 NUDT22Q9BRQ3 303 aa13.9□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms