RNA–Protein interactions for RNA: ENST00000596549.5

LIG1-212, Transcript of DNA ligase 1, humanhuman

TSL 4

Gene LIG1, Length 580 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-212ENST00000596549 CCDC81Q6ZN84 652 aa12.84□□□□□ -0.35
LIG1-212ENST00000596549 PEX26Q7Z412 305 aa12.84□□□□□ -0.35
LIG1-212ENST00000596549 ARHGAP22Q7Z5H3 698 aa12.84□□□□□ -0.35
LIG1-212ENST00000596549 VASH2Q86V25 355 aa12.84□□□□□ -0.35
LIG1-212ENST00000596549 RASGEF1AQ8N9B8 481 aa12.84□□□□□ -0.35
LIG1-212ENST00000596549 AGBL5Q8NDL9 886 aa12.84□□□□□ -0.35
LIG1-212ENST00000596549 GPR150Q8NGU9 434 aa12.84□□□□□ -0.35
LIG1-212ENST00000596549 NAT14Q8WUY8 206 aa12.84□□□□□ -0.35
LIG1-212ENST00000596549 ART4Q93070 314 aa12.84□□□□□ -0.35
LIG1-212ENST00000596549 COL26A1Q96A83 441 aa12.84□□□□□ -0.35
LIG1-212ENST00000596549 AHCYL2Q96HN2 611 aaKnown RBP12.84□□□□□ -0.35
LIG1-212ENST00000596549 CCNL2Q96S94 520 aaPredicted RBP12.84□□□□□ -0.35
LIG1-212ENST00000596549 DPYSL5Q9BPU6 564 aa12.84□□□□□ -0.35
LIG1-212ENST00000596549 POT1Q9NUX5 634 aa12.84□□□□□ -0.35
LIG1-212ENST00000596549 IMPACTQ9P2X3 320 aa12.84□□□□□ -0.35
LIG1-212ENST00000596549 FKBPLQ9UIM3 349 aa12.84□□□□□ -0.35
LIG1-212ENST00000596549 AMFRQ9UKV5 643 aa12.84□□□□□ -0.35
LIG1-212ENST00000596549 WDR37Q9Y2I8 494 aa12.84□□□□□ -0.35
LIG1-212ENST00000596549 R3HDM2Q9Y2K5 976 aaKnown RBP12.84□□□□□ -0.35
LIG1-212ENST00000596549 PKP3Q9Y446 797 aa12.84□□□□□ -0.35
LIG1-212ENST00000596549 KCTD3Q9Y597 815 aa12.84□□□□□ -0.35
LIG1-212ENST00000596549 PCDHGA3Q9Y5H0 932 aa12.84□□□□□ -0.35
LIG1-212ENST00000596549 B3GALT1Q9Y5Z6 326 aa12.84□□□□□ -0.35
LIG1-212ENST00000596549 SLC30A1Q9Y6M5 507 aa12.84□□□□□ -0.35
LIG1-212ENST00000596549 PDZK1P1A8MUH7 402 aa12.83□□□□□ -0.36
LIG1-212ENST00000596549 XRCC1P18887 633 aaPredicted RBP12.83□□□□□ -0.36
LIG1-212ENST00000596549 TNNT3P45378 269 aaPredicted RBP12.83□□□□□ -0.36
LIG1-212ENST00000596549 ZNF140P52738 457 aaPredicted RBP12.83□□□□□ -0.36
LIG1-212ENST00000596549 XIAPP98170 497 aa12.83□□□□□ -0.36
LIG1-212ENST00000596549 RHDQ02161 417 aa12.83□□□□□ -0.36
LIG1-212ENST00000596549 DMPKQ09013 629 aa12.83□□□□□ -0.36
LIG1-212ENST00000596549 ITGA9Q13797 1035 aa12.83□□□□□ -0.36
LIG1-212ENST00000596549 CLCA4Q14CN2 919 aa12.83□□□□□ -0.36
LIG1-212ENST00000596549 TAF1AQ15573 450 aaPredicted RBP12.83□□□□□ -0.36
LIG1-212ENST00000596549 SNAP47Q5SQN1 464 aa12.83□□□□□ -0.36
LIG1-212ENST00000596549 KCTD11Q693B1 232 aa12.83□□□□□ -0.36
LIG1-212ENST00000596549 FAM83HQ6ZRV2 1179 aaPredicted RBP12.83□□□□□ -0.36
LIG1-212ENST00000596549 TMEM26Q6ZUK4 368 aa12.83□□□□□ -0.36
LIG1-212ENST00000596549 FAM129CQ86XR2 697 aa12.83□□□□□ -0.36
LIG1-212ENST00000596549 OR4K2Q8NGD2 314 aa12.83□□□□□ -0.36
LIG1-212ENST00000596549 OR13C4Q8NGS5 318 aa12.83□□□□□ -0.36
LIG1-212ENST00000596549 GDAP1Q8TB36 358 aa12.83□□□□□ -0.36
LIG1-212ENST00000596549 NCSTNQ92542 709 aa12.83□□□□□ -0.36
LIG1-212ENST00000596549 SH3KBP1Q96B97 665 aa12.83□□□□□ -0.36
LIG1-212ENST00000596549 HES6Q96HZ4 224 aa12.83□□□□□ -0.36
LIG1-212ENST00000596549 SEMA4CQ9C0C4 833 aa12.83□□□□□ -0.36
LIG1-212ENST00000596549 B3GNT4Q9C0J1 378 aa12.83□□□□□ -0.36
LIG1-212ENST00000596549 UCK1Q9HA47 277 aa12.83□□□□□ -0.36
LIG1-212ENST00000596549 AKAP7Q9P0M2 348 aaPredicted RBP12.83□□□□□ -0.36
LIG1-212ENST00000596549 KLHL3Q9UH77 587 aa12.83□□□□□ -0.36
LIG1-212ENST00000596549 PIKFYVEQ9Y2I7 2098 aa12.83□□□□□ -0.36
LIG1-212ENST00000596549 OR2AG2A6NM03 316 aa12.82□□□□□ -0.36
LIG1-212ENST00000596549 EFCAB7A8K855 629 aa12.82□□□□□ -0.36
LIG1-212ENST00000596549 A8MU76 341 aa12.82□□□□□ -0.36
LIG1-212ENST00000596549 MIF4GDA9UHW6 222 aaKnown RBP12.82□□□□□ -0.36
LIG1-212ENST00000596549 TK2O00142 265 aa12.82□□□□□ -0.36
LIG1-212ENST00000596549 STX7O15400 261 aaKnown RBP12.82□□□□□ -0.36
LIG1-212ENST00000596549 SGTAO43765 313 aa12.82□□□□□ -0.36
LIG1-212ENST00000596549 PPFIA2O75334 1257 aa12.82□□□□□ -0.36
LIG1-212ENST00000596549 METTL18O95568 372 aa12.82□□□□□ -0.36
LIG1-212ENST00000596549 C9P02748 559 aa12.82□□□□□ -0.36
LIG1-212ENST00000596549 CD82P27701 267 aa12.82□□□□□ -0.36
LIG1-212ENST00000596549 CSTF2P33240 577 aaKnown RBP eCLIP12.82□□□□□ -0.36
LIG1-212ENST00000596549 PPM1FP49593 454 aaPredicted RBP12.82□□□□□ -0.36
LIG1-212ENST00000596549 KIF5AQ12840 1032 aa12.82□□□□□ -0.36
LIG1-212ENST00000596549 GTF2H3Q13889 308 aa12.82□□□□□ -0.36
LIG1-212ENST00000596549 GPR18Q14330 331 aa12.82□□□□□ -0.36
LIG1-212ENST00000596549 SPARCL1Q14515 664 aa12.82□□□□□ -0.36
LIG1-212ENST00000596549 LDLRAP1Q5SW96 308 aa12.82□□□□□ -0.36
LIG1-212ENST00000596549 AGAP9Q5VTM2 703 aa12.82□□□□□ -0.36
LIG1-212ENST00000596549 ANKS6Q68DC2 871 aa12.82□□□□□ -0.36
LIG1-212ENST00000596549 WASH2PQ6VEQ5 465 aa12.82□□□□□ -0.36
LIG1-212ENST00000596549 SYCE1Q8N0S2 351 aa12.82□□□□□ -0.36
LIG1-212ENST00000596549 BEND7Q8N7W2 519 aaPredicted RBP12.82□□□□□ -0.36
LIG1-212ENST00000596549 AVL9Q8NBF6 648 aa12.82□□□□□ -0.36
LIG1-212ENST00000596549 LSM14AQ8ND56 463 aaKnown RBP12.82□□□□□ -0.36
LIG1-212ENST00000596549 SLC35B2Q8TB61 432 aa12.82□□□□□ -0.36
LIG1-212ENST00000596549 BRSK1Q8TDC3 778 aa12.82□□□□□ -0.36
LIG1-212ENST00000596549 JPH3Q8WXH2 748 aaPredicted RBP12.82□□□□□ -0.36
LIG1-212ENST00000596549 RSC1A1Q92681 617 aa12.82□□□□□ -0.36
LIG1-212ENST00000596549 TAAR9Q96RI9 348 aa12.82□□□□□ -0.36
LIG1-212ENST00000596549 TBL1YQ9BQ87 522 aa12.82□□□□□ -0.36
LIG1-212ENST00000596549 DDA1Q9BW61 102 aa12.82□□□□□ -0.36
LIG1-212ENST00000596549 LDHAL6BQ9BYZ2 381 aaPredicted RBP12.82□□□□□ -0.36
LIG1-212ENST00000596549 ZCCHC2Q9C0B9 1178 aaKnown RBP12.82□□□□□ -0.36
LIG1-212ENST00000596549 APMAPQ9HDC9 416 aa12.82□□□□□ -0.36
LIG1-212ENST00000596549 WASH6PQ9NQA3 447 aa12.82□□□□□ -0.36
LIG1-212ENST00000596549 WDR70Q9NW82 654 aa12.82□□□□□ -0.36
LIG1-212ENST00000596549 SIDT1Q9NXL6 827 aaKnown RBP12.82□□□□□ -0.36
LIG1-212ENST00000596549 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP12.82□□□□□ -0.362e-6■■■■□ 22.1
LIG1-212ENST00000596549 AAR2Q9Y312 384 aaKnown RBP12.82□□□□□ -0.36
LIG1-212ENST00000596549 AHCTF1Q8WYP5 2266 aa12.81□□□□□ -0.36
LIG1-212ENST00000596549 C5orf60A6NFR6 353 aa12.81□□□□□ -0.36
LIG1-212ENST00000596549 AGAP14A8MT82 685 aa12.81□□□□□ -0.36
LIG1-212ENST00000596549 B4E171 279 aa12.81□□□□□ -0.36
LIG1-212ENST00000596549 STMND1H3BQB6 276 aa12.81□□□□□ -0.36
LIG1-212ENST00000596549 CCL22O00626 93 aa12.81□□□□□ -0.36
LIG1-212ENST00000596549 LDB2O43679 373 aa12.81□□□□□ -0.36
LIG1-212ENST00000596549 SRP72O76094 671 aaKnown RBP12.81□□□□□ -0.36
LIG1-212ENST00000596549 STK10O94804 968 aaKnown RBP12.81□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms