RNA–Protein interactions for RNA: ENST00000585941.5

LIG3-205, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,699 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-205ENST00000585941 PCDH12Q9NPG4 1184 aa14.01□□□□□ -0.17
LIG3-205ENST00000585941 IKZF3Q9UKT9 509 aa14.01□□□□□ -0.17
LIG3-205ENST00000585941 KIAA1549LQ6ZVL6 1849 aa14.01□□□□□ -0.17
LIG3-205ENST00000585941 PLXNA2O75051 1894 aa14.01□□□□□ -0.17
LIG3-205ENST00000585941 EDDM13A0A1B0GTR0 161 aa14.01□□□□□ -0.17
LIG3-205ENST00000585941 CFAP99D6REC4 459 aa14.01□□□□□ -0.17
LIG3-205ENST00000585941 PSMD11O00231 422 aa14.01□□□□□ -0.17
LIG3-205ENST00000585941 KPNA5O15131 536 aa14.01□□□□□ -0.17
LIG3-205ENST00000585941 SKAP2O75563 359 aaPredicted RBP14.01□□□□□ -0.17
LIG3-205ENST00000585941 TRIM16O95361 564 aa14.01□□□□□ -0.17
LIG3-205ENST00000585941 JUNP05412 331 aaKnown RBP14.01□□□□□ -0.17
LIG3-205ENST00000585941 BMP1P13497 986 aa14.01□□□□□ -0.17
LIG3-205ENST00000585941 PIK3R1P27986 724 aa14.01□□□□□ -0.17
LIG3-205ENST00000585941 CPOXP36551 454 aa14.01□□□□□ -0.17
LIG3-205ENST00000585941 CDH13P55290 713 aa14.01□□□□□ -0.17
LIG3-205ENST00000585941 MAPRE2Q15555 327 aa14.01□□□□□ -0.17
LIG3-205ENST00000585941 PREPLQ4J6C6 727 aaPredicted RBP14.01□□□□□ -0.17
LIG3-205ENST00000585941 KANK2Q63ZY3 851 aa14.01□□□□□ -0.17
LIG3-205ENST00000585941 GET4Q7L5D6 327 aaPredicted RBP14.01□□□□□ -0.17
LIG3-205ENST00000585941 C12orf40Q86WS4 652 aa14.01□□□□□ -0.17
LIG3-205ENST00000585941 PELI3Q8N2H9 469 aa14.01□□□□□ -0.17
LIG3-205ENST00000585941 CLDN19Q8N6F1 224 aa14.01□□□□□ -0.17
LIG3-205ENST00000585941 OR56A4Q8NGH8 313 aa14.01□□□□□ -0.17
LIG3-205ENST00000585941 AGAP11Q8TF27 550 aa14.01□□□□□ -0.17
LIG3-205ENST00000585941 UCMAQ8WVF2 138 aa14.01□□□□□ -0.17
LIG3-205ENST00000585941 CCT7Q99832 543 aa14.01□□□□□ -0.17
LIG3-205ENST00000585941 EBF3Q9H4W6 596 aa14.01□□□□□ -0.17
LIG3-205ENST00000585941 NDE1Q9NXR1 346 aa14.01□□□□□ -0.17
LIG3-205ENST00000585941 PCTPQ9UKL6 214 aa14.01□□□□□ -0.17
LIG3-205ENST00000585941 CDH7Q9ULB5 785 aa14.01□□□□□ -0.17
LIG3-205ENST00000585941 FIS1Q9Y3D6 152 aa14.01□□□□□ -0.17
LIG3-205ENST00000585941 PRSS21Q9Y6M0 314 aa14.01□□□□□ -0.17
LIG3-205ENST00000585941 TRANK1O15050 2925 aa14.01□□□□□ -0.17
LIG3-205ENST00000585941 ANKRD12Q6UB98 2062 aa14□□□□□ -0.17
LIG3-205ENST00000585941 C16orf96A6NNT2 1141 aa14□□□□□ -0.17
LIG3-205ENST00000585941 A8MUI8 341 aa14□□□□□ -0.17
LIG3-205ENST00000585941 QSOX1O00391 747 aa14□□□□□ -0.17
LIG3-205ENST00000585941 GPC4O75487 556 aa14□□□□□ -0.17
LIG3-205ENST00000585941 CIB2O75838 187 aa14□□□□□ -0.17
LIG3-205ENST00000585941 AP2A2O94973 939 aa14□□□□□ -0.17
LIG3-205ENST00000585941 CHEK2O96017 543 aa14□□□□□ -0.17
LIG3-205ENST00000585941 CTSLP07711 333 aa14□□□□□ -0.17
LIG3-205ENST00000585941 ATP4BP51164 291 aa14□□□□□ -0.17
LIG3-205ENST00000585941 PKNOX1P55347 436 aa14□□□□□ -0.17
LIG3-205ENST00000585941 CYLC2Q14093 348 aaPredicted RBP14□□□□□ -0.17
LIG3-205ENST00000585941 SQLEQ14534 574 aa14□□□□□ -0.17
LIG3-205ENST00000585941 PCBP2Q15366 365 aaKnown RBP eCLIP14□□□□□ -0.17
LIG3-205ENST00000585941 UGT3A2Q3SY77 523 aa14□□□□□ -0.17
LIG3-205ENST00000585941 FNDC3BQ53EP0 1204 aaKnown RBP14□□□□□ -0.17
LIG3-205ENST00000585941 CDKL4Q5MAI5 379 aa14□□□□□ -0.17
LIG3-205ENST00000585941 SBSNQ6UWP8 590 aa14□□□□□ -0.17
LIG3-205ENST00000585941 RPS27LQ71UM5 84 aaKnown RBP14□□□□□ -0.17
LIG3-205ENST00000585941 SCUBE1Q8IWY4 988 aa14□□□□□ -0.17
LIG3-205ENST00000585941 NRSN1Q8IZ57 195 aa14□□□□□ -0.17
LIG3-205ENST00000585941 TRAM1L1Q8N609 369 aa14□□□□□ -0.17
LIG3-205ENST00000585941 PDPRQ8NCN5 879 aa14□□□□□ -0.17
LIG3-205ENST00000585941 TMIEQ8NEW7 156 aa14□□□□□ -0.17
LIG3-205ENST00000585941 TRPC4APQ8TEL6 797 aa14□□□□□ -0.17
LIG3-205ENST00000585941 OR8D1Q8WZ84 308 aa14□□□□□ -0.17
LIG3-205ENST00000585941 C19orf60Q96EN9 201 aa14□□□□□ -0.17
LIG3-205ENST00000585941 DCUN1D1Q96GG9 259 aa14□□□□□ -0.17
LIG3-205ENST00000585941 CATSPER2Q96P56 530 aa14□□□□□ -0.17
LIG3-205ENST00000585941 LENG8Q96PV6 779 aaPredicted RBP14□□□□□ -0.17
LIG3-205ENST00000585941 ZSCAN5AQ9BUG6 496 aa14□□□□□ -0.17
LIG3-205ENST00000585941 SPATA16Q9BXB7 569 aa14□□□□□ -0.17
LIG3-205ENST00000585941 RDH14Q9HBH5 336 aa14□□□□□ -0.17
LIG3-205ENST00000585941 ZBTB26Q9HCK0 441 aa14□□□□□ -0.17
LIG3-205ENST00000585941 OARD1Q9Y530 152 aa14□□□□□ -0.17
LIG3-205ENST00000585941 H0Y858 1186 aa13.99□□□□□ -0.17
LIG3-205ENST00000585941 UBDO15205 165 aa13.99□□□□□ -0.17
LIG3-205ENST00000585941 CRCPO75575 148 aa13.99□□□□□ -0.17
LIG3-205ENST00000585941 ESRRBO95718 433 aa13.99□□□□□ -0.17
LIG3-205ENST00000585941 CA5AP35218 305 aa13.99□□□□□ -0.17
LIG3-205ENST00000585941 HK3P52790 923 aa13.99□□□□□ -0.17
LIG3-205ENST00000585941 SEMG2Q02383 582 aa13.99□□□□□ -0.17
LIG3-205ENST00000585941 FCHO2Q0JRZ9 810 aa13.99□□□□□ -0.17
LIG3-205ENST00000585941 ZNF284Q2VY69 593 aa13.99□□□□□ -0.17
LIG3-205ENST00000585941 GAB4Q2WGN9 574 aa13.99□□□□□ -0.17
LIG3-205ENST00000585941 HNRNPA1L2Q32P51 320 aaKnown RBP13.99□□□□□ -0.17
LIG3-205ENST00000585941 TTC23LQ6PF05 361 aa13.99□□□□□ -0.17
LIG3-205ENST00000585941 NET1Q7Z628 596 aaPredicted RBP13.99□□□□□ -0.17
LIG3-205ENST00000585941 POU5F2Q8N7G0 328 aa13.99□□□□□ -0.17
LIG3-205ENST00000585941 MYLIPQ8WY64 445 aa13.99□□□□□ -0.17
LIG3-205ENST00000585941 HGH1Q9BTY7 390 aa13.99□□□□□ -0.17
LIG3-205ENST00000585941 DENND2DQ9H6A0 471 aaPredicted RBP13.99□□□□□ -0.17
LIG3-205ENST00000585941 TNFRSF12AQ9NP84 129 aa13.99□□□□□ -0.17
LIG3-205ENST00000585941 COPG1Q9Y678 874 aaKnown RBP13.99□□□□□ -0.17
LIG3-205ENST00000585941 LOC100653049A0A140TA62 436 aa13.98□□□□□ -0.17
LIG3-205ENST00000585941 FFAR2O15552 330 aa13.98□□□□□ -0.17
LIG3-205ENST00000585941 KRT34O76011 436 aa13.98□□□□□ -0.17
LIG3-205ENST00000585941 UROSP10746 265 aa13.98□□□□□ -0.17
LIG3-205ENST00000585941 ATP1B2P14415 290 aaPredicted RBP13.98□□□□□ -0.17
LIG3-205ENST00000585941 VCLP18206 1134 aa13.98□□□□□ -0.17
LIG3-205ENST00000585941 FCARP24071 287 aa13.98□□□□□ -0.17
LIG3-205ENST00000585941 ITGB7P26010 798 aa13.98□□□□□ -0.17
LIG3-205ENST00000585941 MMP12P39900 470 aa13.98□□□□□ -0.17
LIG3-205ENST00000585941 EIF2DP41214 584 aaKnown RBP13.98□□□□□ -0.17
LIG3-205ENST00000585941 ELP6Q0PNE2 266 aa13.98□□□□□ -0.17
LIG3-205ENST00000585941 CUL3Q13618 768 aa13.98□□□□□ -0.17
LIG3-205ENST00000585941 E2F5Q15329 346 aa13.98□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms