RNA–Protein interactions for RNA: ENST00000584760.1

SREBF1-223, Transcript of sterol regulatory element binding transcription factor 1, human

TSL 2

Gene SREBF1, Length 564 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SREBF1-223	ENST00000584760	TRIM58	Q8NG06	486 aa		13.11	□□□□□ -0.31
SREBF1-223	ENST00000584760	C19orf43	Q9BQ61	176 aa		13.11	□□□□□ -0.31
SREBF1-223	ENST00000584760	TLR10	Q9BXR5	811 aa		13.11	□□□□□ -0.31
SREBF1-223	ENST00000584760	FAM117A	Q9C073	453 aa		13.11	□□□□□ -0.31
SREBF1-223	ENST00000584760	STRADB	Q9C0K7	418 aa		13.11	□□□□□ -0.31
SREBF1-223	ENST00000584760	OSGEPL1	Q9H4B0	414 aa		13.11	□□□□□ -0.31
SREBF1-223	ENST00000584760	LRRC40	Q9H9A6	602 aa		13.11	□□□□□ -0.31
SREBF1-223	ENST00000584760	UGT1A7	Q9HAW7	530 aa		13.11	□□□□□ -0.31
SREBF1-223	ENST00000584760	UGT1A10	Q9HAW8	530 aa		13.11	□□□□□ -0.31
SREBF1-223	ENST00000584760	UGT1A8	Q9HAW9	530 aa		13.11	□□□□□ -0.31
SREBF1-223	ENST00000584760	SARS2	Q9NP81	518 aa	Known RBP	13.11	□□□□□ -0.31
SREBF1-223	ENST00000584760	KLC4	Q9NSK0	619 aa		13.11	□□□□□ -0.31
SREBF1-223	ENST00000584760	EIF2AK3	Q9NZJ5	1116 aa	Known RBP	13.11	□□□□□ -0.31
SREBF1-223	ENST00000584760	FKBPL	Q9UIM3	349 aa		13.11	□□□□□ -0.31
SREBF1-223	ENST00000584760	PPP2R2C	Q9Y2T4	447 aa		13.11	□□□□□ -0.31
SREBF1-223	ENST00000584760	KCTD3	Q9Y597	815 aa		13.11	□□□□□ -0.31
SREBF1-223	ENST00000584760	COL6A6	A6NMZ7	2263 aa		13.11	□□□□□ -0.31
SREBF1-223	ENST00000584760	NAV2	Q8IVL1	2488 aa		13.1	□□□□□ -0.31
SREBF1-223	ENST00000584760	KIR2DS5	A0A0G2JLQ3	304 aa		13.1	□□□□□ -0.31
SREBF1-223	ENST00000584760		A0A0G2JNG1	304 aa		13.1	□□□□□ -0.31
SREBF1-223	ENST00000584760	KIR2DS3	K7RE56	304 aa		13.1	□□□□□ -0.31
SREBF1-223	ENST00000584760	PLD2	O14939	933 aa		13.1	□□□□□ -0.31
SREBF1-223	ENST00000584760	NRDC	O43847	1150 aa		13.1	□□□□□ -0.31
SREBF1-223	ENST00000584760	SNX2	O60749	519 aa		13.1	□□□□□ -0.31
SREBF1-223	ENST00000584760	SRP72	O76094	671 aa	Known RBP	13.1	□□□□□ -0.31
SREBF1-223	ENST00000584760	TNFSF15	O95150	251 aa		13.1	□□□□□ -0.31
SREBF1-223	ENST00000584760	CRTAM	O95727	393 aa		13.1	□□□□□ -0.31
SREBF1-223	ENST00000584760	SLC2A4	P14672	509 aa		13.1	□□□□□ -0.31
SREBF1-223	ENST00000584760	ZNF7	P17097	686 aa	Predicted RBP	13.1	□□□□□ -0.31
SREBF1-223	ENST00000584760	CD1C	P29017	333 aa		13.1	□□□□□ -0.31
SREBF1-223	ENST00000584760	UBE2I	P63279	158 aa	Known RBP	13.1	□□□□□ -0.31
SREBF1-223	ENST00000584760	XIAP	P98170	497 aa		13.1	□□□□□ -0.31
SREBF1-223	ENST00000584760	PDE1B	Q01064	536 aa		13.1	□□□□□ -0.31
SREBF1-223	ENST00000584760	HHEX	Q03014	270 aa		13.1	□□□□□ -0.31
SREBF1-223	ENST00000584760	CLN3	Q13286	438 aa		13.1	□□□□□ -0.31
SREBF1-223	ENST00000584760	SQSTM1	Q13501	440 aa		13.1	□□□□□ -0.31
SREBF1-223	ENST00000584760	KIR2DS5	Q14953	304 aa		13.1	□□□□□ -0.31
SREBF1-223	ENST00000584760	AMZ1	Q400G9	498 aa		13.1	□□□□□ -0.31
SREBF1-223	ENST00000584760	ZNF574	Q6ZN55	896 aa	Predicted RBP	13.1	□□□□□ -0.31
SREBF1-223	ENST00000584760	RAB11FIP2	Q7L804	512 aa		13.1	□□□□□ -0.31
SREBF1-223	ENST00000584760	CLEC14A	Q86T13	490 aa		13.1	□□□□□ -0.31
SREBF1-223	ENST00000584760	ZNF761	Q86XN6	746 aa	Predicted RBP	13.1	□□□□□ -0.31
SREBF1-223	ENST00000584760	TRAPPC5	Q8IUR0	188 aa		13.1	□□□□□ -0.31
SREBF1-223	ENST00000584760	RASGEF1A	Q8N9B8	481 aa		13.1	□□□□□ -0.31
SREBF1-223	ENST00000584760	EXD3	Q8N9H8	876 aa		13.1	□□□□□ -0.31
SREBF1-223	ENST00000584760	OR13C4	Q8NGS5	318 aa		13.1	□□□□□ -0.31
SREBF1-223	ENST00000584760	GDAP1	Q8TB36	358 aa		13.1	□□□□□ -0.31
SREBF1-223	ENST00000584760	C1orf54	Q8WWF1	131 aa		13.1	□□□□□ -0.31
SREBF1-223	ENST00000584760	LRRC45	Q96CN5	670 aa		13.1	□□□□□ -0.31
SREBF1-223	ENST00000584760	ZCCHC2	Q9C0B9	1178 aa	Known RBP	13.1	□□□□□ -0.31
SREBF1-223	ENST00000584760	SEMA6C	Q9H3T2	930 aa		13.1	□□□□□ -0.31
SREBF1-223	ENST00000584760	PRDM8	Q9NQV8	689 aa		13.1	□□□□□ -0.31
SREBF1-223	ENST00000584760	KCNK4	Q9NYG8	393 aa		13.1	□□□□□ -0.31
SREBF1-223	ENST00000584760	IL17B	Q9UHF5	180 aa		13.1	□□□□□ -0.31
SREBF1-223	ENST00000584760	DNAJC16	Q9Y2G8	782 aa		13.1	□□□□□ -0.31
SREBF1-223	ENST00000584760	TRBV23OR9-2	A0A075B6M9	112 aa		13.09	□□□□□ -0.31
SREBF1-223	ENST00000584760	OR5K4	A6NMS3	321 aa		13.09	□□□□□ -0.31
SREBF1-223	ENST00000584760	AGAP14	A8MT82	685 aa		13.09	□□□□□ -0.31
SREBF1-223	ENST00000584760	ZW10	O43264	779 aa		13.09	□□□□□ -0.31
SREBF1-223	ENST00000584760	ITGA2B	P08514	1039 aa		13.09	□□□□□ -0.31
SREBF1-223	ENST00000584760	HGF	P14210	728 aa		13.09	□□□□□ -0.31
SREBF1-223	ENST00000584760	STIP1	P31948	543 aa	Known RBP	13.09	□□□□□ -0.31
SREBF1-223	ENST00000584760	CTSC	P53634	463 aa		13.09	□□□□□ -0.31
SREBF1-223	ENST00000584760	GPLD1	P80108	840 aa		13.09	□□□□□ -0.31
SREBF1-223	ENST00000584760	DMPK	Q09013	629 aa		13.09	□□□□□ -0.31
SREBF1-223	ENST00000584760	NFATC2	Q13469	925 aa		13.09	□□□□□ -0.31
SREBF1-223	ENST00000584760	GTF2H3	Q13889	308 aa		13.09	□□□□□ -0.31
SREBF1-223	ENST00000584760	NKAIN2	Q5VXU1	208 aa		13.09	□□□□□ -0.31
SREBF1-223	ENST00000584760	USP53	Q70EK8	1073 aa		13.09	□□□□□ -0.31
SREBF1-223	ENST00000584760	SLC9B2	Q86UD5	537 aa		13.09	□□□□□ -0.31
SREBF1-223	ENST00000584760	PIM3	Q86V86	326 aa		13.09	□□□□□ -0.31
SREBF1-223	ENST00000584760	TAB3	Q8N5C8	712 aa	Predicted RBP	13.09	□□□□□ -0.31
SREBF1-223	ENST00000584760	ZNF398	Q8TD17	642 aa		13.09	□□□□□ -0.31
SREBF1-223	ENST00000584760	TMEM159	Q96B96	161 aa		13.09	□□□□□ -0.31
SREBF1-223	ENST00000584760	CCNL2	Q96S94	520 aa	Predicted RBP	13.09	□□□□□ -0.31
SREBF1-223	ENST00000584760	SLC38A3	Q99624	504 aa		13.09	□□□□□ -0.31
SREBF1-223	ENST00000584760	SCHIP1	Q9P0W5	487 aa	Predicted RBP	13.09	□□□□□ -0.31
SREBF1-223	ENST00000584760	CPNE7	Q9UBL6	633 aa		13.09	□□□□□ -0.31
SREBF1-223	ENST00000584760	LOXL2	Q9Y4K0	774 aa		13.09	□□□□□ -0.31
SREBF1-223	ENST00000584760	IGHV5-10-1	A0A0J9YXX1	117 aa		13.08	□□□□□ -0.32
SREBF1-223	ENST00000584760	ERI2	A8K979	691 aa	Known RBP	13.08	□□□□□ -0.32
SREBF1-223	ENST00000584760	CCL22	O00626	93 aa		13.08	□□□□□ -0.32
SREBF1-223	ENST00000584760	EFS	O43281	561 aa		13.08	□□□□□ -0.32
SREBF1-223	ENST00000584760	IFNB1	P01574	187 aa		13.08	□□□□□ -0.32
SREBF1-223	ENST00000584760	THRA	P10827	490 aa		13.08	□□□□□ -0.32
SREBF1-223	ENST00000584760	BRAF	P15056	766 aa		13.08	□□□□□ -0.32
SREBF1-223	ENST00000584760	HADHA	P40939	763 aa		13.08	□□□□□ -0.32
SREBF1-223	ENST00000584760	NFKB2	Q00653	900 aa		13.08	□□□□□ -0.32
SREBF1-223	ENST00000584760	SNX1	Q13596	522 aa		13.08	□□□□□ -0.32
SREBF1-223	ENST00000584760	C16orf72	Q14CZ0	275 aa		13.08	□□□□□ -0.32
SREBF1-223	ENST00000584760	SEPT7	Q16181	437 aa	Known RBP	13.08	□□□□□ -0.32
SREBF1-223	ENST00000584760	PHF19	Q5T6S3	580 aa		13.08	□□□□□ -0.32
SREBF1-223	ENST00000584760	AGAP9	Q5VTM2	703 aa		13.08	□□□□□ -0.32
SREBF1-223	ENST00000584760	DRICH1	Q6PGQ1	229 aa	Predicted RBP	13.08	□□□□□ -0.32
SREBF1-223	ENST00000584760	ABRAXAS1	Q6UWZ7	409 aa		13.08	□□□□□ -0.32
SREBF1-223	ENST00000584760	WASH2P	Q6VEQ5	465 aa		13.08	□□□□□ -0.32
SREBF1-223	ENST00000584760	PRUNE1	Q86TP1	453 aa		13.08	□□□□□ -0.32
SREBF1-223	ENST00000584760	FBXO39	Q8N4B4	442 aa		13.08	□□□□□ -0.32
SREBF1-223	ENST00000584760	GLIS1	Q8NBF1	620 aa		13.08	□□□□□ -0.32
SREBF1-223	ENST00000584760	AVL9	Q8NBF6	648 aa		13.08	□□□□□ -0.32

Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms