RNA–Protein interactions for RNA: ENST00000572334.6

VPS53-213, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 561 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-213ENST00000572334 ATP13A5Q4VNC0 1218 aa6.61□□□□□ -1.35
VPS53-213ENST00000572334 CRTC2Q53ET0 693 aaPredicted RBP6.61□□□□□ -1.35
VPS53-213ENST00000572334 ZNF569Q5MCW4 686 aa6.61□□□□□ -1.35
VPS53-213ENST00000572334 AGAP9Q5VTM2 703 aa6.61□□□□□ -1.35
VPS53-213ENST00000572334 CRTC3Q6UUV7 619 aa6.61□□□□□ -1.35
VPS53-213ENST00000572334 KDELC1Q6UW63 502 aa6.61□□□□□ -1.35
VPS53-213ENST00000572334 MFSD7Q6UXD7 560 aa6.61□□□□□ -1.35
VPS53-213ENST00000572334 WASH2PQ6VEQ5 465 aa6.61□□□□□ -1.35
VPS53-213ENST00000572334 NT5DC3Q86UY8 548 aa6.61□□□□□ -1.35
VPS53-213ENST00000572334 VSIG1Q86XK7 387 aa6.61□□□□□ -1.35
VPS53-213ENST00000572334 MAP7D3Q8IWC1 876 aa6.61□□□□□ -1.35
VPS53-213ENST00000572334 TTC30BQ8N4P2 665 aa6.61□□□□□ -1.35
VPS53-213ENST00000572334 TRAM1L1Q8N609 369 aa6.61□□□□□ -1.35
VPS53-213ENST00000572334 GPR150Q8NGU9 434 aa6.61□□□□□ -1.35
VPS53-213ENST00000572334 SLC35G2Q8TBE7 412 aa6.61□□□□□ -1.35
VPS53-213ENST00000572334 CCHCR1Q8TD31 782 aa6.61□□□□□ -1.35
VPS53-213ENST00000572334 KLHL6Q8WZ60 621 aa6.61□□□□□ -1.35
VPS53-213ENST00000572334 SH3KBP1Q96B97 665 aa6.61□□□□□ -1.35
VPS53-213ENST00000572334 IQCDQ96DY2 449 aa6.61□□□□□ -1.35
VPS53-213ENST00000572334 ZNF830Q96NB3 372 aaPredicted RBP6.61□□□□□ -1.35
VPS53-213ENST00000572334 AGAP3Q96P47 875 aa6.61□□□□□ -1.35
VPS53-213ENST00000572334 CATSPER2Q96P56 530 aa6.61□□□□□ -1.35
VPS53-213ENST00000572334 VPS35Q96QK1 796 aa6.61□□□□□ -1.35
VPS53-213ENST00000572334 DNAJC7Q99615 494 aa6.61□□□□□ -1.35
VPS53-213ENST00000572334 ZPBPQ9BS86 351 aa6.61□□□□□ -1.35
VPS53-213ENST00000572334 TIMM29Q9BSF4 260 aa6.61□□□□□ -1.35
VPS53-213ENST00000572334 ZSCAN5AQ9BUG6 496 aa6.61□□□□□ -1.35
VPS53-213ENST00000572334 SPATA16Q9BXB7 569 aa6.61□□□□□ -1.35
VPS53-213ENST00000572334 XPO4Q9C0E2 1151 aaKnown RBP6.61□□□□□ -1.35
VPS53-213ENST00000572334 SLC25A51Q9H1U9 297 aa6.61□□□□□ -1.35
VPS53-213ENST00000572334 EPB41L1Q9H4G0 881 aa6.61□□□□□ -1.35
VPS53-213ENST00000572334 AKIRIN1Q9H9L7 192 aaPredicted RBP6.61□□□□□ -1.35
VPS53-213ENST00000572334 GPN2Q9H9Y4 310 aaPredicted RBP6.61□□□□□ -1.35
VPS53-213ENST00000572334 GLOD4Q9HC38 313 aa6.61□□□□□ -1.35
VPS53-213ENST00000572334 SLC40A1Q9NP59 571 aa6.61□□□□□ -1.35
VPS53-213ENST00000572334 WASH6PQ9NQA3 447 aa6.61□□□□□ -1.35
VPS53-213ENST00000572334 SAE1Q9UBE0 346 aaPredicted RBP6.61□□□□□ -1.35
VPS53-213ENST00000572334 HYOU1Q9Y4L1 999 aa6.61□□□□□ -1.35
VPS53-213ENST00000572334 HEY1Q9Y5J3 304 aa6.61□□□□□ -1.35
VPS53-213ENST00000572334 CACNA1DQ01668 2161 aa6.61□□□□□ -1.35
VPS53-213ENST00000572334 CNTRLQ7Z7A1 2325 aa6.6□□□□□ -1.35
VPS53-213ENST00000572334 SSU72P8A0A1W2PR75 194 aa6.6□□□□□ -1.35
VPS53-213ENST00000572334 LRRD1A4D1F6 860 aa6.6□□□□□ -1.35
VPS53-213ENST00000572334 GPR89AB7ZAQ6 455 aa6.6□□□□□ -1.35
VPS53-213ENST00000572334 APOL1O14791 398 aa6.6□□□□□ -1.35
VPS53-213ENST00000572334 POLR1CO15160 346 aaPredicted RBP6.6□□□□□ -1.35
VPS53-213ENST00000572334 KMOO15229 486 aa6.6□□□□□ -1.35
VPS53-213ENST00000572334 CAPN5O15484 640 aaPredicted RBP6.6□□□□□ -1.35
VPS53-213ENST00000572334 VEGFDO43915 354 aa6.6□□□□□ -1.35
VPS53-213ENST00000572334 UBXN7O94888 489 aa6.6□□□□□ -1.35
VPS53-213ENST00000572334 NDST3O95803 873 aa6.6□□□□□ -1.35
VPS53-213ENST00000572334 GPR89BP0CG08 455 aa6.6□□□□□ -1.35
VPS53-213ENST00000572334 PECAM1P16284 738 aaPredicted RBP6.6□□□□□ -1.35
VPS53-213ENST00000572334 NR1D1P20393 614 aa6.6□□□□□ -1.35
VPS53-213ENST00000572334 RPL10P27635 214 aaKnown RBP6.6□□□□□ -1.35
VPS53-213ENST00000572334 CASRP41180 1078 aa6.6□□□□□ -1.35
VPS53-213ENST00000572334 CDKN2BP42772 138 aa6.6□□□□□ -1.35
VPS53-213ENST00000572334 CHRNA4P43681 627 aa6.6□□□□□ -1.35
VPS53-213ENST00000572334 SEPHS1P49903 392 aa6.6□□□□□ -1.35
VPS53-213ENST00000572334 CTSCP53634 463 aa6.6□□□□□ -1.35
VPS53-213ENST00000572334 DRG2P55039 364 aaKnown RBP6.6□□□□□ -1.35
VPS53-213ENST00000572334 FOXK1P85037 733 aa6.6□□□□□ -1.35
VPS53-213ENST00000572334 CDK18Q07002 472 aa6.6□□□□□ -1.35
VPS53-213ENST00000572334 AP1B1Q10567 949 aa6.6□□□□□ -1.35
VPS53-213ENST00000572334 GPR18Q14330 331 aa6.6□□□□□ -1.35
VPS53-213ENST00000572334 TCEAL1Q15170 157 aa6.6□□□□□ -1.35
VPS53-213ENST00000572334 SEPT7Q16181 437 aaKnown RBP6.6□□□□□ -1.35
VPS53-213ENST00000572334 PCSK7Q16549 785 aa6.6□□□□□ -1.35
VPS53-213ENST00000572334 DEFB109BQ30KR1 87 aa6.6□□□□□ -1.35
VPS53-213ENST00000572334 TEX44Q53QW1 395 aa6.6□□□□□ -1.35
VPS53-213ENST00000572334 PDPK2PQ6A1A2 396 aa6.6□□□□□ -1.35
VPS53-213ENST00000572334 CERS6Q6ZMG9 384 aa6.6□□□□□ -1.35
VPS53-213ENST00000572334 FAM83HQ6ZRV2 1179 aaPredicted RBP6.6□□□□□ -1.35
VPS53-213ENST00000572334 PRSS42Q7Z5A4 293 aa6.6□□□□□ -1.35
VPS53-213ENST00000572334 TMEM135Q86UB9 458 aa6.6□□□□□ -1.35
VPS53-213ENST00000572334 LRRTM4Q86VH4 590 aa6.6□□□□□ -1.35
VPS53-213ENST00000572334 PLXDC1Q8IUK5 500 aa6.6□□□□□ -1.35
VPS53-213ENST00000572334 PHYKPLQ8IUZ5 450 aa6.6□□□□□ -1.35
VPS53-213ENST00000572334 GALNT6Q8NCL4 622 aa6.6□□□□□ -1.35
VPS53-213ENST00000572334 KIF18AQ8NI77 898 aa6.6□□□□□ -1.35
VPS53-213ENST00000572334 CTNNBL1Q8WYA6 563 aaPredicted RBP6.6□□□□□ -1.35
VPS53-213ENST00000572334 STARD8Q92502 1023 aa6.6□□□□□ -1.35
VPS53-213ENST00000572334 RNF25Q96BH1 459 aaPredicted RBP6.6□□□□□ -1.35
VPS53-213ENST00000572334 ABHD17AQ96GS6 310 aa6.6□□□□□ -1.35
VPS53-213ENST00000572334 OXNAD1Q96HP4 312 aaPredicted RBP6.6□□□□□ -1.35
VPS53-213ENST00000572334 MRGPRX2Q96LB1 330 aa6.6□□□□□ -1.35
VPS53-213ENST00000572334 TEKT5Q96M29 485 aa6.6□□□□□ -1.35
VPS53-213ENST00000572334 TGM7Q96PF1 710 aa6.6□□□□□ -1.35
VPS53-213ENST00000572334 RUFY1Q96T51 708 aa6.6□□□□□ -1.35
VPS53-213ENST00000572334 GORASP1Q9BQQ3 440 aa6.6□□□□□ -1.35
VPS53-213ENST00000572334 ADGRE3Q9BY15 652 aa6.6□□□□□ -1.35
VPS53-213ENST00000572334 LDHAL6BQ9BYZ2 381 aaPredicted RBP6.6□□□□□ -1.35
VPS53-213ENST00000572334 RAB33BQ9H082 229 aa6.6□□□□□ -1.35
VPS53-213ENST00000572334 OSGEPL1Q9H4B0 414 aa6.6□□□□□ -1.35
VPS53-213ENST00000572334 ZNF768Q9H5H4 540 aaKnown RBP6.6□□□□□ -1.35
VPS53-213ENST00000572334 BPIFA1Q9NP55 256 aa6.6□□□□□ -1.35
VPS53-213ENST00000572334 IL26Q9NPH9 171 aa6.6□□□□□ -1.35
VPS53-213ENST00000572334 ZNF71Q9NQZ8 489 aaPredicted RBP6.6□□□□□ -1.35
VPS53-213ENST00000572334 UBP1Q9NZI7 540 aa6.6□□□□□ -1.35
VPS53-213ENST00000572334 EPHA6Q9UF33 1036 aa6.6□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 42.8 ms