RNA–Protein interactions for RNA: ENST00000570062.1

VPS39-213, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 842 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-213ENST00000570062 GKP32189 559 aa7.88□□□□□ -1.15
VPS39-213ENST00000570062 MMP12P39900 470 aa7.88□□□□□ -1.15
VPS39-213ENST00000570062 PIK3CGP48736 1102 aa7.88□□□□□ -1.15
VPS39-213ENST00000570062 NUMBP49757 651 aa7.88□□□□□ -1.15
VPS39-213ENST00000570062 RPL14P50914 215 aaKnown RBP7.88□□□□□ -1.15
VPS39-213ENST00000570062 GALK1P51570 392 aa7.88□□□□□ -1.15
VPS39-213ENST00000570062 MNAT1P51948 309 aa7.88□□□□□ -1.15
VPS39-213ENST00000570062 HNRNPH2P55795 449 aaKnown RBP7.88□□□□□ -1.15
VPS39-213ENST00000570062 IRX4P78413 519 aa7.88□□□□□ -1.15
VPS39-213ENST00000570062 KDSRQ06136 332 aa7.88□□□□□ -1.15
VPS39-213ENST00000570062 CAMK2GQ13555 558 aaPredicted RBP7.88□□□□□ -1.15
VPS39-213ENST00000570062 GRM2Q14416 872 aa7.88□□□□□ -1.15
VPS39-213ENST00000570062 SEMA3AQ14563 771 aa7.88□□□□□ -1.15
VPS39-213ENST00000570062 PTPRCAPQ14761 206 aa7.88□□□□□ -1.15
VPS39-213ENST00000570062 ZRSR2Q15696 482 aaKnown RBP7.88□□□□□ -1.15
VPS39-213ENST00000570062 SETMARQ53H47 684 aaPredicted RBP7.88□□□□□ -1.15
VPS39-213ENST00000570062 PLEKHS1Q5SXH7 462 aa7.88□□□□□ -1.15
VPS39-213ENST00000570062 FAM91A1Q658Y4 838 aa7.88□□□□□ -1.15
VPS39-213ENST00000570062 PSAPL1Q6NUJ1 521 aa7.88□□□□□ -1.15
VPS39-213ENST00000570062 NEK5Q6P3R8 708 aa7.88□□□□□ -1.15
VPS39-213ENST00000570062 ZNF549Q6P9A3 640 aa7.88□□□□□ -1.15
VPS39-213ENST00000570062 PAQR3Q6TCH7 311 aa7.88□□□□□ -1.15
VPS39-213ENST00000570062 NEK10Q6ZWH5 1172 aa7.88□□□□□ -1.15
VPS39-213ENST00000570062 TECPR1Q7Z6L1 1165 aa7.88□□□□□ -1.15
VPS39-213ENST00000570062 KBTBD6Q86V97 674 aa7.88□□□□□ -1.15
VPS39-213ENST00000570062 C12orf40Q86WS4 652 aa7.88□□□□□ -1.15
VPS39-213ENST00000570062 PIANPQ8IYJ0 282 aa7.88□□□□□ -1.15
VPS39-213ENST00000570062 TCAIMQ8N3R3 496 aa7.88□□□□□ -1.15
VPS39-213ENST00000570062 TMEM151AQ8N4L1 468 aa7.88□□□□□ -1.15
VPS39-213ENST00000570062 DDHD1Q8NEL9 900 aa7.88□□□□□ -1.15
VPS39-213ENST00000570062 CXorf40AQ8TE69 158 aa7.88□□□□□ -1.15
VPS39-213ENST00000570062 BTN2A2Q8WVV5 523 aa7.88□□□□□ -1.15
VPS39-213ENST00000570062 ASZ1Q8WWH4 475 aa7.88□□□□□ -1.15
VPS39-213ENST00000570062 SORCS1Q8WY21 1168 aa7.88□□□□□ -1.15
VPS39-213ENST00000570062 FGF14Q92915 247 aa7.88□□□□□ -1.15
VPS39-213ENST00000570062 EID2BQ96D98 161 aa7.88□□□□□ -1.15
VPS39-213ENST00000570062 L3HYPDHQ96EM0 354 aa7.88□□□□□ -1.15
VPS39-213ENST00000570062 MAGEB10Q96LZ2 347 aaPredicted RBP7.88□□□□□ -1.15
VPS39-213ENST00000570062 FAM129BQ96TA1 746 aa7.88□□□□□ -1.15
VPS39-213ENST00000570062 GPR21Q99679 349 aa7.88□□□□□ -1.15
VPS39-213ENST00000570062 KXD1Q9BQD3 176 aa7.88□□□□□ -1.15
VPS39-213ENST00000570062 SPATA16Q9BXB7 569 aa7.88□□□□□ -1.15
VPS39-213ENST00000570062 FAM126AQ9BYI3 521 aaPredicted RBP7.88□□□□□ -1.15
VPS39-213ENST00000570062 RSPH9Q9H1X1 276 aaPredicted RBP7.88□□□□□ -1.15
VPS39-213ENST00000570062 RDH14Q9HBH5 336 aa7.88□□□□□ -1.15
VPS39-213ENST00000570062 NPHS2Q9NP85 383 aa7.88□□□□□ -1.15
VPS39-213ENST00000570062 SLCO1B3Q9NPD5 702 aa7.88□□□□□ -1.15
VPS39-213ENST00000570062 TXLNGQ9NUQ3 528 aa7.88□□□□□ -1.15
VPS39-213ENST00000570062 DNAJC28Q9NX36 388 aa7.88□□□□□ -1.15
VPS39-213ENST00000570062 GTSE1Q9NYZ3 720 aa7.88□□□□□ -1.15
VPS39-213ENST00000570062 CPSF2Q9P2I0 782 aaKnown RBP7.88□□□□□ -1.15
VPS39-213ENST00000570062 RNF112Q9ULX5 631 aa7.88□□□□□ -1.15
VPS39-213ENST00000570062 STON1Q9Y6Q2 735 aa7.88□□□□□ -1.15
VPS39-213ENST00000570062 NUMBLQ9Y6R0 609 aa7.88□□□□□ -1.15
VPS39-213ENST00000570062 OBSL1O75147 1896 aa7.87□□□□□ -1.15
VPS39-213ENST00000570062 A0A0G2JND7 137 aa7.87□□□□□ -1.15
VPS39-213ENST00000570062 LOC100996750A0A140TA64 210 aa7.87□□□□□ -1.15
VPS39-213ENST00000570062 CCL22O00626 93 aa7.87□□□□□ -1.15
VPS39-213ENST00000570062 AREL1O15033 823 aa7.87□□□□□ -1.15
VPS39-213ENST00000570062 TRIM24O15164 1050 aa7.87□□□□□ -1.15
VPS39-213ENST00000570062 SLC22A2O15244 555 aa7.87□□□□□ -1.15
VPS39-213ENST00000570062 RAD51BO15315 384 aa7.87□□□□□ -1.15
VPS39-213ENST00000570062 HDAC3O15379 428 aa7.87□□□□□ -1.15
VPS39-213ENST00000570062 VEGFDO43915 354 aa7.87□□□□□ -1.15
VPS39-213ENST00000570062 LZTS3O60299 673 aaPredicted RBP7.87□□□□□ -1.15
VPS39-213ENST00000570062 DLX3O60479 287 aa7.87□□□□□ -1.15
VPS39-213ENST00000570062 SLC25A14O95258 325 aaPredicted RBP7.87□□□□□ -1.15
VPS39-213ENST00000570062 C8GP07360 202 aa7.87□□□□□ -1.15
VPS39-213ENST00000570062 C1SP09871 688 aa7.87□□□□□ -1.15
VPS39-213ENST00000570062 HIST1H2AGP0C0S8 130 aaPredicted RBP7.87□□□□□ -1.15
VPS39-213ENST00000570062 MPC1LP0DKB6 136 aa7.87□□□□□ -1.15
VPS39-213ENST00000570062 ADRB3P13945 408 aa7.87□□□□□ -1.15
VPS39-213ENST00000570062 ALOX15P16050 662 aaPredicted RBP7.87□□□□□ -1.15
VPS39-213ENST00000570062 VCLP18206 1134 aa7.87□□□□□ -1.15
VPS39-213ENST00000570062 HIST1H2ADP20671 130 aa7.87□□□□□ -1.15
VPS39-213ENST00000570062 LHCGRP22888 699 aa7.87□□□□□ -1.15
VPS39-213ENST00000570062 LTBRP36941 435 aa7.87□□□□□ -1.15
VPS39-213ENST00000570062 CLCN7P51798 805 aa7.87□□□□□ -1.15
VPS39-213ENST00000570062 NAGLUP54802 743 aa7.87□□□□□ -1.15
VPS39-213ENST00000570062 ALDH18A1P54886 795 aaKnown RBP7.87□□□□□ -1.15
VPS39-213ENST00000570062 HERVK_113P63132 956 aa7.87□□□□□ -1.15
VPS39-213ENST00000570062 IRF9Q00978 393 aa7.87□□□□□ -1.15
VPS39-213ENST00000570062 SATB1Q01826 763 aa7.87□□□□□ -1.15
VPS39-213ENST00000570062 SP140Q13342 867 aa7.87□□□□□ -1.15
VPS39-213ENST00000570062 GTF2H3Q13889 308 aa7.87□□□□□ -1.15
VPS39-213ENST00000570062 ACOX1Q15067 660 aa7.87□□□□□ -1.15
VPS39-213ENST00000570062 SMAD1Q15797 465 aaKnown RBP7.87□□□□□ -1.15
VPS39-213ENST00000570062 MAP7D1Q3KQU3 841 aa7.87□□□□□ -1.15
VPS39-213ENST00000570062 ZNF789Q5FWF6 425 aa7.87□□□□□ -1.15
VPS39-213ENST00000570062 EOGTQ5NDL2 527 aa7.87□□□□□ -1.15
VPS39-213ENST00000570062 SH2D4BQ5SQS7 431 aa7.87□□□□□ -1.15
VPS39-213ENST00000570062 HENMT1Q5T8I9 393 aaKnown RBP7.87□□□□□ -1.15
VPS39-213ENST00000570062 SEL1L3Q68CR1 1132 aa7.87□□□□□ -1.15
VPS39-213ENST00000570062 ANKS6Q68DC2 871 aa7.87□□□□□ -1.15
VPS39-213ENST00000570062 ZNF776Q68DI1 518 aaPredicted RBP7.87□□□□□ -1.15
VPS39-213ENST00000570062 LIPIQ6XZB0 460 aa7.87□□□□□ -1.15
VPS39-213ENST00000570062 PARS2Q7L3T8 475 aaKnown RBP7.87□□□□□ -1.15
VPS39-213ENST00000570062 LDB1Q86U70 411 aaPredicted RBP7.87□□□□□ -1.15
VPS39-213ENST00000570062 ZSWIM9Q86XI8 627 aa7.87□□□□□ -1.15
VPS39-213ENST00000570062 GPSM1Q86YR5 675 aa7.87□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 193.3 ms