RNA–Protein interactions for RNA: ENST00000569030.5

CLN3-237, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,109 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-237ENST00000569030 ITGA9Q13797 1035 aa18.08■□□□□ 0.48
CLN3-237ENST00000569030 GTF2H3Q13889 308 aa18.08■□□□□ 0.48
CLN3-237ENST00000569030 MEI1Q5TIA1 1274 aa18.08■□□□□ 0.48
CLN3-237ENST00000569030 TMEM220Q6QAJ8 160 aa18.08■□□□□ 0.48
CLN3-237ENST00000569030 ABRAXAS1Q6UWZ7 409 aa18.08■□□□□ 0.48
CLN3-237ENST00000569030 MICALCLQ6ZW33 695 aa18.08■□□□□ 0.48
CLN3-237ENST00000569030 CCDC112Q8NEF3 446 aa18.08■□□□□ 0.48
CLN3-237ENST00000569030 OR10G6Q8NH81 332 aa18.08■□□□□ 0.48
CLN3-237ENST00000569030 NAT14Q8WUY8 206 aa18.08■□□□□ 0.48
CLN3-237ENST00000569030 SH3KBP1Q96B97 665 aa18.08■□□□□ 0.48
CLN3-237ENST00000569030 AHCYL2Q96HN2 611 aaKnown RBP18.08■□□□□ 0.48
CLN3-237ENST00000569030 FCRL3Q96P31 734 aaPredicted RBP18.08■□□□□ 0.48
CLN3-237ENST00000569030 BBC3Q96PG8 261 aaPredicted RBP18.08■□□□□ 0.48
CLN3-237ENST00000569030 DPYSL5Q9BPU6 564 aa18.08■□□□□ 0.48
CLN3-237ENST00000569030 CPNE5Q9HCH3 593 aa18.08■□□□□ 0.48
CLN3-237ENST00000569030 LZTFL1Q9NQ48 299 aa18.08■□□□□ 0.48
CLN3-237ENST00000569030 SMOXQ9NWM0 555 aa18.08■□□□□ 0.48
CLN3-237ENST00000569030 FOXJ2Q9P0K8 574 aa18.08■□□□□ 0.48
CLN3-237ENST00000569030 PDP2Q9P2J9 529 aa18.08■□□□□ 0.48
CLN3-237ENST00000569030 PIEZO2Q9H5I5 2752 aa18.07■□□□□ 0.48
CLN3-237ENST00000569030 OR2AG2A6NM03 316 aa18.07■□□□□ 0.48
CLN3-237ENST00000569030 C9orf172C9J069 976 aa18.07■□□□□ 0.48
CLN3-237ENST00000569030 CCL22O00626 93 aa18.07■□□□□ 0.48
CLN3-237ENST00000569030 HGSO14964 777 aaPredicted RBP18.07■□□□□ 0.48
CLN3-237ENST00000569030 LDB2O43679 373 aa18.07■□□□□ 0.48
CLN3-237ENST00000569030 DUX1O43812 170 aa18.07■□□□□ 0.48
CLN3-237ENST00000569030 POP7O75817 140 aaKnown RBP18.07■□□□□ 0.48
CLN3-237ENST00000569030 SRP72O76094 671 aaKnown RBP18.07■□□□□ 0.48
CLN3-237ENST00000569030 CRTAMO95727 393 aa18.07■□□□□ 0.48
CLN3-237ENST00000569030 FGF3P11487 239 aaPredicted RBP18.07■□□□□ 0.48
CLN3-237ENST00000569030 TPH1P17752 444 aa18.07■□□□□ 0.48
CLN3-237ENST00000569030 PPM1FP49593 454 aaPredicted RBP18.07■□□□□ 0.48
CLN3-237ENST00000569030 ZNF140P52738 457 aaPredicted RBP18.07■□□□□ 0.48
CLN3-237ENST00000569030 CXADRP78310 365 aa18.07■□□□□ 0.48
CLN3-237ENST00000569030 CCZ1BP86790 482 aa18.07■□□□□ 0.48
CLN3-237ENST00000569030 CCZ1P86791 482 aaPredicted RBP18.07■□□□□ 0.48
CLN3-237ENST00000569030 TMPRSS15P98073 1019 aa18.07■□□□□ 0.48
CLN3-237ENST00000569030 TRA2AQ13595 282 aaKnown RBP eCLIP18.07■□□□□ 0.48
CLN3-237ENST00000569030 SOWAHCQ53LP3 525 aaPredicted RBP18.07■□□□□ 0.48
CLN3-237ENST00000569030 SEL1L2Q5TEA6 688 aa18.07■□□□□ 0.48
CLN3-237ENST00000569030 WDR74Q6RFH5 385 aaPredicted RBP18.07■□□□□ 0.48
CLN3-237ENST00000569030 ZNF662Q6ZS27 426 aa18.07■□□□□ 0.48
CLN3-237ENST00000569030 SLC13A5Q86YT5 568 aaPredicted RBP18.07■□□□□ 0.48
CLN3-237ENST00000569030 NCSTNQ92542 709 aa18.07■□□□□ 0.48
CLN3-237ENST00000569030 RTP4Q96DX8 246 aa18.07■□□□□ 0.48
CLN3-237ENST00000569030 CCDC97Q96F63 343 aaPredicted RBP18.07■□□□□ 0.48
CLN3-237ENST00000569030 STN1Q9H668 368 aaKnown RBP18.07■□□□□ 0.48
CLN3-237ENST00000569030 ASB8Q9H765 288 aa18.07■□□□□ 0.48
CLN3-237ENST00000569030 WDR37Q9Y2I8 494 aa18.07■□□□□ 0.48
CLN3-237ENST00000569030 OR52A4PA6NMU1 304 aa18.06■□□□□ 0.48
CLN3-237ENST00000569030 PDZK1P1A8MUH7 402 aa18.06■□□□□ 0.48
CLN3-237ENST00000569030 LIASO43766 372 aa18.06■□□□□ 0.48
CLN3-237ENST00000569030 IDSP22304 550 aa18.06■□□□□ 0.48
CLN3-237ENST00000569030 MAPK9P45984 424 aa18.06■□□□□ 0.48
CLN3-237ENST00000569030 EPHA4P54764 986 aa18.06■□□□□ 0.48
CLN3-237ENST00000569030 CLCA4Q14CN2 919 aa18.06■□□□□ 0.48
CLN3-237ENST00000569030 RPS6KA1Q15418 735 aa18.06■□□□□ 0.48
CLN3-237ENST00000569030 TGIF1Q15583 401 aa18.06■□□□□ 0.48
CLN3-237ENST00000569030 OASLQ15646 514 aaKnown RBP18.06■□□□□ 0.48
CLN3-237ENST00000569030 SNAP47Q5SQN1 464 aa18.06■□□□□ 0.48
CLN3-237ENST00000569030 AGAP9Q5VTM2 703 aa18.06■□□□□ 0.48
CLN3-237ENST00000569030 BROXQ5VW32 411 aa18.06■□□□□ 0.48
CLN3-237ENST00000569030 WASH2PQ6VEQ5 465 aa18.06■□□□□ 0.48
CLN3-237ENST00000569030 FAM83HQ6ZRV2 1179 aaPredicted RBP18.06■□□□□ 0.48
CLN3-237ENST00000569030 DET1Q7L5Y6 550 aa18.06■□□□□ 0.48
CLN3-237ENST00000569030 AMZ2Q86W34 360 aa18.06■□□□□ 0.48
CLN3-237ENST00000569030 BEND7Q8N7W2 519 aaPredicted RBP18.06■□□□□ 0.48
CLN3-237ENST00000569030 C1orf54Q8WWF1 131 aa18.06■□□□□ 0.48
CLN3-237ENST00000569030 PMEPA1Q969W9 287 aa18.06■□□□□ 0.48
CLN3-237ENST00000569030 SGF29Q96ES7 293 aa18.06■□□□□ 0.48
CLN3-237ENST00000569030 LDHAL6BQ9BYZ2 381 aaPredicted RBP18.06■□□□□ 0.48
CLN3-237ENST00000569030 ZCCHC2Q9C0B9 1178 aaKnown RBP18.06■□□□□ 0.48
CLN3-237ENST00000569030 FAM96AQ9H5X1 160 aa18.06■□□□□ 0.48
CLN3-237ENST00000569030 LRRC40Q9H9A6 602 aa18.06■□□□□ 0.48
CLN3-237ENST00000569030 WASH6PQ9NQA3 447 aa18.06■□□□□ 0.48
CLN3-237ENST00000569030 PIH1D1Q9NWS0 290 aaKnown RBP18.06■□□□□ 0.48
CLN3-237ENST00000569030 OGFRQ9NZT2 677 aa18.06■□□□□ 0.48
CLN3-237ENST00000569030 AKAP7Q9P0M2 348 aaPredicted RBP18.06■□□□□ 0.48
CLN3-237ENST00000569030 FEZ2Q9UHY8 353 aaPredicted RBP18.06■□□□□ 0.48
CLN3-237ENST00000569030 ACSL6Q9UKU0 697 aa18.06■□□□□ 0.48
CLN3-237ENST00000569030 SLC30A1Q9Y6M5 507 aa18.06■□□□□ 0.48
CLN3-237ENST00000569030 CFAP46Q8IYW2 2715 aa18.05■□□□□ 0.48
CLN3-237ENST00000569030 AGAP14A8MT82 685 aa18.05■□□□□ 0.48
CLN3-237ENST00000569030 A8MU76 341 aa18.05■□□□□ 0.48
CLN3-237ENST00000569030 AP2A1O95782 977 aa18.05■□□□□ 0.48
CLN3-237ENST00000569030 VIPP01282 170 aa18.05■□□□□ 0.48
CLN3-237ENST00000569030 CCDC175P0C221 793 aa18.05■□□□□ 0.48
CLN3-237ENST00000569030 VCLP18206 1134 aa18.05■□□□□ 0.48
CLN3-237ENST00000569030 MSH3P20585 1137 aa18.05■□□□□ 0.48
CLN3-237ENST00000569030 AKT1P31749 480 aa18.05■□□□□ 0.48
CLN3-237ENST00000569030 ARSDP51689 593 aa18.05■□□□□ 0.48
CLN3-237ENST00000569030 TMPRSS3P57727 454 aa18.05■□□□□ 0.48
CLN3-237ENST00000569030 PDE1BQ01064 536 aa18.05■□□□□ 0.48
CLN3-237ENST00000569030 SNX1Q13596 522 aa18.05■□□□□ 0.48
CLN3-237ENST00000569030 P3H1Q32P28 736 aa18.05■□□□□ 0.48
CLN3-237ENST00000569030 FNBP1LQ5T0N5 605 aa18.05■□□□□ 0.48
CLN3-237ENST00000569030 TMEM26Q6ZUK4 368 aa18.05■□□□□ 0.48
CLN3-237ENST00000569030 GPR155Q7Z3F1 870 aa18.05■□□□□ 0.48
CLN3-237ENST00000569030 ARHGAP22Q7Z5H3 698 aa18.05■□□□□ 0.48
CLN3-237ENST00000569030 PRUNE1Q86TP1 453 aa18.05■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms