RNA–Protein interactions for RNA: ENST00000568076.6

CLN3-230, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,968 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-230ENST00000568076 C22orf39Q6P5X5 142 aa20.03■□□□□ 0.8
CLN3-230ENST00000568076 SCIMPQ6UWF3 145 aa20.03■□□□□ 0.8
CLN3-230ENST00000568076 GPR26Q8NDV2 337 aa20.03■□□□□ 0.8
CLN3-230ENST00000568076 OR2T11Q8NH01 316 aa20.03■□□□□ 0.8
CLN3-230ENST00000568076 MICAL1Q8TDZ2 1067 aa20.03■□□□□ 0.8
CLN3-230ENST00000568076 LRCH3Q96II8 777 aa20.03■□□□□ 0.8
CLN3-230ENST00000568076 CDK15Q96Q40 435 aa20.03■□□□□ 0.8
CLN3-230ENST00000568076 LYSMD1Q96S90 227 aa20.03■□□□□ 0.8
CLN3-230ENST00000568076 TCF25Q9BQ70 676 aa20.03■□□□□ 0.8
CLN3-230ENST00000568076 C6orf203Q9P0P8 240 aaPredicted RBP20.03■□□□□ 0.8
CLN3-230ENST00000568076 BCAP29Q9UHQ4 241 aa20.03■□□□□ 0.8
CLN3-230ENST00000568076 GNPTGQ9UJJ9 305 aa20.03■□□□□ 0.8
CLN3-230ENST00000568076 HS3ST2Q9Y278 367 aa20.03■□□□□ 0.8
CLN3-230ENST00000568076 GPR45Q9Y5Y3 372 aa20.03■□□□□ 0.8
CLN3-230ENST00000568076 BNIP3LO60238 219 aa20.02■□□□□ 0.8
CLN3-230ENST00000568076 VPS4BO75351 444 aa20.02■□□□□ 0.8
CLN3-230ENST00000568076 OR4F21O95013 312 aa20.02■□□□□ 0.8
CLN3-230ENST00000568076 MATN4O95460 622 aa20.02■□□□□ 0.8
CLN3-230ENST00000568076 SPAM1P38567 509 aa20.02■□□□□ 0.8
CLN3-230ENST00000568076 ERVPABLB-1P60509 514 aa20.02■□□□□ 0.8
CLN3-230ENST00000568076 MYLK3Q32MK0 819 aa20.02■□□□□ 0.8
CLN3-230ENST00000568076 ZFP1Q6P2D0 407 aa20.02■□□□□ 0.8
CLN3-230ENST00000568076 GPRIN3Q6ZVF9 776 aa20.02■□□□□ 0.8
CLN3-230ENST00000568076 LILRA2Q8N149 483 aa20.02■□□□□ 0.8
CLN3-230ENST00000568076 ZNF784Q8NCA9 323 aaPredicted RBP20.02■□□□□ 0.8
CLN3-230ENST00000568076 ECHDC3Q96DC8 303 aa20.02■□□□□ 0.8
CLN3-230ENST00000568076 ZNF382Q96SR6 550 aa20.02■□□□□ 0.8
CLN3-230ENST00000568076 MYCBPQ99417 103 aaPredicted RBP20.02■□□□□ 0.8
CLN3-230ENST00000568076 VCX3BQ9H321 246 aa20.02■□□□□ 0.8
CLN3-230ENST00000568076 SLC52A3Q9NQ40 469 aa20.02■□□□□ 0.8
CLN3-230ENST00000568076 HECAQ9UBI9 543 aaPredicted RBP20.02■□□□□ 0.8
CLN3-230ENST00000568076 ST14Q9Y5Y6 855 aa20.02■□□□□ 0.8
CLN3-230ENST00000568076 ANKRD12Q6UB98 2062 aa20.02■□□□□ 0.79
CLN3-230ENST00000568076 PRSS51A0A1B0GVH4 220 aa20.01■□□□□ 0.79
CLN3-230ENST00000568076 MOSPD3O75425 235 aa20.01■□□□□ 0.79
CLN3-230ENST00000568076 SLC25A14O95258 325 aaPredicted RBP20.01■□□□□ 0.79
CLN3-230ENST00000568076 GLUD1P00367 558 aa20.01■□□□□ 0.79
CLN3-230ENST00000568076 CHRM1P11229 460 aaPredicted RBP20.01■□□□□ 0.79
CLN3-230ENST00000568076 SNRPD1P62314 119 aaKnown RBP20.01■□□□□ 0.79
CLN3-230ENST00000568076 TMEM154Q6P9G4 183 aa20.01■□□□□ 0.79
CLN3-230ENST00000568076 FRA10AC1Q70Z53 315 aa20.01■□□□□ 0.79
CLN3-230ENST00000568076 ADAMTSL2Q86TH1 951 aa20.01■□□□□ 0.79
CLN3-230ENST00000568076 CBARPQ8N350 705 aaPredicted RBP20.01■□□□□ 0.79
CLN3-230ENST00000568076 DLG3Q92796 817 aa20.01■□□□□ 0.79
CLN3-230ENST00000568076 IL23AQ9NPF7 189 aa20.01■□□□□ 0.79
CLN3-230ENST00000568076 CRLS1Q9UJA2 301 aa20.01■□□□□ 0.79
CLN3-230ENST00000568076 RIMS3Q9UJD0 308 aa20.01■□□□□ 0.79
CLN3-230ENST00000568076 SLC4A7Q9Y6M7 1214 aa20.01■□□□□ 0.79
CLN3-230ENST00000568076 BBIP1A8MTZ0 92 aa20.01■□□□□ 0.79
CLN3-230ENST00000568076 PEX1O43933 1283 aa20.01■□□□□ 0.79
CLN3-230ENST00000568076 RFPL2O75678 378 aa20.01■□□□□ 0.79
CLN3-230ENST00000568076 TRIM16O95361 564 aa20.01■□□□□ 0.79
CLN3-230ENST00000568076 PFKLP17858 780 aa20.01■□□□□ 0.79
CLN3-230ENST00000568076 PCBP2Q15366 365 aaKnown RBP eCLIP20.01■□□□□ 0.79
CLN3-230ENST00000568076 GSTA3Q16772 222 aa20.01■□□□□ 0.79
CLN3-230ENST00000568076 LETMD1Q6P1Q0 360 aa20.01■□□□□ 0.79
CLN3-230ENST00000568076 SPATA24Q86W54 205 aa20.01■□□□□ 0.79
CLN3-230ENST00000568076 CDYL2Q8N8U2 506 aa20.01■□□□□ 0.79
CLN3-230ENST00000568076 SCRN2Q96FV2 425 aa20.01■□□□□ 0.79
CLN3-230ENST00000568076 GPATCH1Q9BRR8 931 aaKnown RBP20.01■□□□□ 0.79
CLN3-230ENST00000568076 NOL11Q9H8H0 719 aaKnown RBP20.01■□□□□ 0.79
CLN3-230ENST00000568076 GMPR2Q9P2T1 348 aaKnown RBP20.01■□□□□ 0.79
CLN3-230ENST00000568076 HELZP42694 1942 aaKnown RBP20■□□□□ 0.79
CLN3-230ENST00000568076 CXorf51AA0A1B0GTR3 108 aa20■□□□□ 0.79
CLN3-230ENST00000568076 GOLGA8CPA6NN73 597 aa20■□□□□ 0.79
CLN3-230ENST00000568076 AGAP14A8MT82 685 aa20■□□□□ 0.79
CLN3-230ENST00000568076 FFAR2O15552 330 aa20■□□□□ 0.79
CLN3-230ENST00000568076 IDO1P14902 403 aa20■□□□□ 0.79
CLN3-230ENST00000568076 LHCGRP22888 699 aa20■□□□□ 0.79
CLN3-230ENST00000568076 SLC7A2P52569 658 aa20■□□□□ 0.79
CLN3-230ENST00000568076 ADGRE1Q14246 886 aa20■□□□□ 0.79
CLN3-230ENST00000568076 TEAD2Q15562 447 aa20■□□□□ 0.79
CLN3-230ENST00000568076 C6orf10Q5SRN2 563 aa20■□□□□ 0.79
CLN3-230ENST00000568076 PLPP4Q5VZY2 271 aa20■□□□□ 0.79
CLN3-230ENST00000568076 LRRC66Q68CR7 880 aa20■□□□□ 0.79
CLN3-230ENST00000568076 GRAMD4Q6IC98 578 aa20■□□□□ 0.79
CLN3-230ENST00000568076 GOLGA7Q7Z5G4 137 aa20■□□□□ 0.79
CLN3-230ENST00000568076 NXPE1Q8N323 547 aa20■□□□□ 0.79
CLN3-230ENST00000568076 PLCD3Q8N3E9 789 aa20■□□□□ 0.79
CLN3-230ENST00000568076 PPP2R3CQ969Q6 453 aa20■□□□□ 0.79
CLN3-230ENST00000568076 ISG20Q96AZ6 181 aaKnown RBP20■□□□□ 0.79
CLN3-230ENST00000568076 MIEF2Q96C03 454 aa20■□□□□ 0.79
CLN3-230ENST00000568076 ROPN1LQ96C74 230 aa20■□□□□ 0.79
CLN3-230ENST00000568076 TEX37Q96LM6 180 aa20■□□□□ 0.79
CLN3-230ENST00000568076 SUV39H2Q9H5I1 410 aa20■□□□□ 0.79
CLN3-230ENST00000568076 COPS7BQ9H9Q2 264 aaPredicted RBP20■□□□□ 0.79
CLN3-230ENST00000568076 MRPL40Q9NQ50 206 aaKnown RBP20■□□□□ 0.79
CLN3-230ENST00000568076 AIG1Q9NVV5 245 aa20■□□□□ 0.79
CLN3-230ENST00000568076 CXXC1Q9P0U4 656 aaPredicted RBP20■□□□□ 0.79
CLN3-230ENST00000568076 SLCO3A1Q9UIG8 710 aa20■□□□□ 0.79
CLN3-230ENST00000568076 PPIL1Q9Y3C6 166 aa20■□□□□ 0.79
CLN3-230ENST00000568076 MYOFQ9NZM1 2061 aa20■□□□□ 0.79
CLN3-230ENST00000568076 DPPA5A6NC42 116 aa19.99■□□□□ 0.79
CLN3-230ENST00000568076 NEDD8-MDP1E9PL57 170 aa19.99■□□□□ 0.79
CLN3-230ENST00000568076 OR7A17O14581 309 aa19.99■□□□□ 0.79
CLN3-230ENST00000568076 CHEK2O96017 543 aa19.99■□□□□ 0.79
CLN3-230ENST00000568076 ZFP36L2P47974 494 aaKnown RBP19.99■□□□□ 0.79
CLN3-230ENST00000568076 CCNHP51946 323 aaPredicted RBP19.99■□□□□ 0.79
CLN3-230ENST00000568076 PTSQ03393 145 aa19.99■□□□□ 0.79
CLN3-230ENST00000568076 GRAMD1BQ3KR37 738 aa19.99■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms