RNA–Protein interactions for RNA: ENST00000563842.5

CLK3-213, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 860 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-213ENST00000563842 MC4RP32245 332 aa13.18□□□□□ -0.3
CLK3-213ENST00000563842 RPL22P35268 128 aaKnown RBP13.18□□□□□ -0.3
CLK3-213ENST00000563842 HALP42357 657 aa13.18□□□□□ -0.3
CLK3-213ENST00000563842 PPM1FP49593 454 aaPredicted RBP13.18□□□□□ -0.3
CLK3-213ENST00000563842 OR1D5P58170 312 aa13.18□□□□□ -0.3
CLK3-213ENST00000563842 ERVPABLB-1P60509 514 aa13.18□□□□□ -0.3
CLK3-213ENST00000563842 DMPKQ09013 629 aa13.18□□□□□ -0.3
CLK3-213ENST00000563842 AMZ1Q400G9 498 aa13.18□□□□□ -0.3
CLK3-213ENST00000563842 C3orf38Q5JPI3 329 aa13.18□□□□□ -0.3
CLK3-213ENST00000563842 CHCHD2P9Q5T1J5 151 aaPredicted RBP13.18□□□□□ -0.3
CLK3-213ENST00000563842 AGAP9Q5VTM2 703 aa13.18□□□□□ -0.3
CLK3-213ENST00000563842 ABRAXAS1Q6UWZ7 409 aa13.18□□□□□ -0.3
CLK3-213ENST00000563842 ZNF547Q8IVP9 402 aa13.18□□□□□ -0.3
CLK3-213ENST00000563842 NXPE1Q8N323 547 aa13.18□□□□□ -0.3
CLK3-213ENST00000563842 SLC35F6Q8N357 371 aa13.18□□□□□ -0.3
CLK3-213ENST00000563842 RASGEF1AQ8N9B8 481 aa13.18□□□□□ -0.3
CLK3-213ENST00000563842 OR10G6Q8NH81 332 aa13.18□□□□□ -0.3
CLK3-213ENST00000563842 FGF11Q92914 225 aa13.18□□□□□ -0.3
CLK3-213ENST00000563842 TBRG4Q969Z0 631 aaKnown RBP eCLIP13.18□□□□□ -0.37e-11■■■■■ 32
CLK3-213ENST00000563842 DNAJC1Q96KC8 554 aaKnown RBP13.18□□□□□ -0.3
CLK3-213ENST00000563842 TTC1Q99614 292 aa13.18□□□□□ -0.3
CLK3-213ENST00000563842 COPS8Q99627 209 aa13.18□□□□□ -0.3
CLK3-213ENST00000563842 EPB41L5Q9HCM4 733 aa13.18□□□□□ -0.3
CLK3-213ENST00000563842 PRDM8Q9NQV8 689 aa13.18□□□□□ -0.3
CLK3-213ENST00000563842 THSD1Q9NS62 852 aa13.18□□□□□ -0.3
CLK3-213ENST00000563842 TRMT1Q9NXH9 659 aaKnown RBP13.18□□□□□ -0.3
CLK3-213ENST00000563842 CPNE7Q9UBL6 633 aa13.18□□□□□ -0.3
CLK3-213ENST00000563842 SLC23A2Q9UGH3 650 aa13.18□□□□□ -0.3
CLK3-213ENST00000563842 RIMKLBQ9ULI2 386 aa13.18□□□□□ -0.3
CLK3-213ENST00000563842 ATXN7L1Q9ULK2 861 aaPredicted RBP13.18□□□□□ -0.3
CLK3-213ENST00000563842 SATB2Q9UPW6 733 aa13.18□□□□□ -0.3
CLK3-213ENST00000563842 DNAJC16Q9Y2G8 782 aa13.18□□□□□ -0.3
CLK3-213ENST00000563842 IGHV1OR21-1A0A087WYE8 117 aa13.17□□□□□ -0.3
CLK3-213ENST00000563842 GOLGA6L10A0A0M3HER8 536 aa13.17□□□□□ -0.3
CLK3-213ENST00000563842 MROH6A6NGR9 719 aa13.17□□□□□ -0.3
CLK3-213ENST00000563842 PGRMC1O00264 195 aaKnown RBP13.17□□□□□ -0.3
CLK3-213ENST00000563842 TAF4O00268 1085 aa13.17□□□□□ -0.3
CLK3-213ENST00000563842 CES2O00748 559 aa13.17□□□□□ -0.3
CLK3-213ENST00000563842 RRP8O43159 456 aaKnown RBP13.17□□□□□ -0.3
CLK3-213ENST00000563842 DUX1O43812 170 aa13.17□□□□□ -0.3
CLK3-213ENST00000563842 EML2O95834 649 aa13.17□□□□□ -0.3
CLK3-213ENST00000563842 VIPP01282 170 aa13.17□□□□□ -0.3
CLK3-213ENST00000563842 ADRA1DP25100 572 aa13.17□□□□□ -0.3
CLK3-213ENST00000563842 KCNJ1P48048 391 aa13.17□□□□□ -0.3
CLK3-213ENST00000563842 EPHA4P54764 986 aa13.17□□□□□ -0.3
CLK3-213ENST00000563842 BASP1P80723 227 aaKnown RBP13.17□□□□□ -0.3
CLK3-213ENST00000563842 SARNPP82979 210 aaKnown RBP13.17□□□□□ -0.3
CLK3-213ENST00000563842 CDK16Q00536 496 aa13.17□□□□□ -0.3
CLK3-213ENST00000563842 CACNG1Q06432 222 aa13.17□□□□□ -0.3
CLK3-213ENST00000563842 ZFP36L1Q07352 338 aaKnown RBP13.17□□□□□ -0.3
CLK3-213ENST00000563842 TRA2AQ13595 282 aaKnown RBP eCLIP13.17□□□□□ -0.3
CLK3-213ENST00000563842 TBC1D25Q3MII6 688 aa13.17□□□□□ -0.3
CLK3-213ENST00000563842 ZRANB3Q5FWF4 1079 aa13.17□□□□□ -0.3
CLK3-213ENST00000563842 LRRC69Q6ZNQ3 347 aa13.17□□□□□ -0.3
CLK3-213ENST00000563842 RAB11FIP2Q7L804 512 aa13.17□□□□□ -0.3
CLK3-213ENST00000563842 C11orf96Q7Z7L8 435 aa13.17□□□□□ -0.3
CLK3-213ENST00000563842 RBM12BQ8IXT5 1001 aaKnown RBP13.17□□□□□ -0.3
CLK3-213ENST00000563842 FBXO39Q8N4B4 442 aa13.17□□□□□ -0.3
CLK3-213ENST00000563842 BEND7Q8N7W2 519 aaPredicted RBP13.17□□□□□ -0.3
CLK3-213ENST00000563842 PRELID2Q8N945 189 aa13.17□□□□□ -0.3
CLK3-213ENST00000563842 PEX13Q92968 403 aa13.17□□□□□ -0.3
CLK3-213ENST00000563842 MAGOHBQ96A72 148 aaKnown RBP13.17□□□□□ -0.3
CLK3-213ENST00000563842 CDKN2AIPNLQ96HQ2 116 aa13.17□□□□□ -0.3
CLK3-213ENST00000563842 RANBP9Q96S59 729 aa13.17□□□□□ -0.3
CLK3-213ENST00000563842 OSBPL9Q96SU4 736 aa13.17□□□□□ -0.3
CLK3-213ENST00000563842 CMKLR1Q99788 373 aa13.17□□□□□ -0.3
CLK3-213ENST00000563842 ZMYND15Q9H091 742 aa13.17□□□□□ -0.3
CLK3-213ENST00000563842 VPS37BQ9H9H4 285 aa13.17□□□□□ -0.3
CLK3-213ENST00000563842 UCK1Q9HA47 277 aa13.17□□□□□ -0.3
CLK3-213ENST00000563842 CASS4Q9NQ75 786 aa13.17□□□□□ -0.3
CLK3-213ENST00000563842 POT1Q9NUX5 634 aa13.17□□□□□ -0.3
CLK3-213ENST00000563842 ZDHHC3Q9NYG2 299 aa13.17□□□□□ -0.3
CLK3-213ENST00000563842 DMXL2Q8TDJ6 3036 aa13.16□□□□□ -0.3
CLK3-213ENST00000563842 ADAMTS20P59510 1910 aa13.16□□□□□ -0.3
CLK3-213ENST00000563842 MGAT4DA6NG13 374 aa13.16□□□□□ -0.3
CLK3-213ENST00000563842 LILRA5A6NI73 299 aa13.16□□□□□ -0.3
CLK3-213ENST00000563842 PRR19A6NJB7 356 aa13.16□□□□□ -0.3
CLK3-213ENST00000563842 OR2AG2A6NM03 316 aa13.16□□□□□ -0.3
CLK3-213ENST00000563842 F8W8V4 182 aa13.16□□□□□ -0.3
CLK3-213ENST00000563842 QSOX1O00391 747 aa13.16□□□□□ -0.3
CLK3-213ENST00000563842 PLD2O14939 933 aa13.16□□□□□ -0.3
CLK3-213ENST00000563842 GPR39O43194 453 aa13.16□□□□□ -0.3
CLK3-213ENST00000563842 JMJD7P0C870 316 aa13.16□□□□□ -0.3
CLK3-213ENST00000563842 ZSCAN5DPP0CG00 497 aa13.16□□□□□ -0.3
CLK3-213ENST00000563842 ATP1B2P14415 290 aaPredicted RBP13.16□□□□□ -0.3
CLK3-213ENST00000563842 HOXB3P14651 431 aaPredicted RBP13.16□□□□□ -0.3
CLK3-213ENST00000563842 PSMA3P25788 255 aa13.16□□□□□ -0.3
CLK3-213ENST00000563842 CD1CP29017 333 aa13.16□□□□□ -0.3
CLK3-213ENST00000563842 PPARGP37231 505 aaPredicted RBP13.16□□□□□ -0.3
CLK3-213ENST00000563842 NPY2RP49146 381 aa13.16□□□□□ -0.3
CLK3-213ENST00000563842 PDX1P52945 283 aa13.16□□□□□ -0.3
CLK3-213ENST00000563842 CTSCP53634 463 aa13.16□□□□□ -0.3
CLK3-213ENST00000563842 BCL7AQ4VC05 210 aa13.16□□□□□ -0.3
CLK3-213ENST00000563842 FNBP1LQ5T0N5 605 aa13.16□□□□□ -0.3
CLK3-213ENST00000563842 PHF19Q5T6S3 580 aa13.16□□□□□ -0.3
CLK3-213ENST00000563842 LYPLAL1Q5VWZ2 237 aa13.16□□□□□ -0.3
CLK3-213ENST00000563842 ZNF449Q6P9G9 518 aa13.16□□□□□ -0.3
CLK3-213ENST00000563842 USP53Q70EK8 1073 aa13.16□□□□□ -0.3
CLK3-213ENST00000563842 TAS2R42Q7RTR8 314 aa13.16□□□□□ -0.3
CLK3-213ENST00000563842 B3GNT8Q7Z7M8 397 aa13.16□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 44.8 ms