RNA–Protein interactions for RNA: ENST00000558518.5

LDLR-208, Transcript of low density lipoprotein receptor, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LDLR, Length 3,617 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-208ENST00000558518 EGFL8Q99944 293 aa11.22□□□□□ -0.61
LDLR-208ENST00000558518 SEMA3CQ99985 751 aa11.22□□□□□ -0.61
LDLR-208ENST00000558518 ALOXE3Q9BYJ1 711 aa11.22□□□□□ -0.61
LDLR-208ENST00000558518 ACTR8Q9H981 624 aa11.22□□□□□ -0.61
LDLR-208ENST00000558518 AGO3Q9H9G7 860 aaKnown RBP11.22□□□□□ -0.61
LDLR-208ENST00000558518 COMMD8Q9NX08 183 aa11.22□□□□□ -0.61
LDLR-208ENST00000558518 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP11.22□□□□□ -0.611e-6■■■□□ 15.8
LDLR-208ENST00000558518 PIM2Q9P1W9 311 aa11.22□□□□□ -0.61
LDLR-208ENST00000558518 KIF17Q9P2E2 1029 aa11.22□□□□□ -0.61
LDLR-208ENST00000558518 LTBP1Q14766 1721 aa11.22□□□□□ -0.61
LDLR-208ENST00000558518 COL4A5P29400 1685 aa11.22□□□□□ -0.61
LDLR-208ENST00000558518 A0A1W2PP18 115 aa11.22□□□□□ -0.61
LDLR-208ENST00000558518 CCDC162PA2VCL2 907 aa11.22□□□□□ -0.61
LDLR-208ENST00000558518 UPK3BL1B0FP48 263 aa11.22□□□□□ -0.61
LDLR-208ENST00000558518 UPK3BL2E5RIL1 263 aa11.22□□□□□ -0.61
LDLR-208ENST00000558518 hCG_2039718K7EN88 272 aa11.22□□□□□ -0.61
LDLR-208ENST00000558518 CD3EAPO15446 510 aaKnown RBP11.22□□□□□ -0.61
LDLR-208ENST00000558518 FAM20BO75063 409 aa11.22□□□□□ -0.61
LDLR-208ENST00000558518 TBX18O95935 607 aa11.22□□□□□ -0.61
LDLR-208ENST00000558518 ANXA6P08133 673 aa11.22□□□□□ -0.61
LDLR-208ENST00000558518 HAPLN1P10915 354 aaPredicted RBP11.22□□□□□ -0.61
LDLR-208ENST00000558518 MYCLP1P12525 358 aaPredicted RBP11.22□□□□□ -0.61
LDLR-208ENST00000558518 NEK2P51955 445 aa11.22□□□□□ -0.61
LDLR-208ENST00000558518 HMGCS1Q01581 520 aa11.22□□□□□ -0.61
LDLR-208ENST00000558518 PTPRNQ16849 979 aa11.22□□□□□ -0.61
LDLR-208ENST00000558518 ZRANB3Q5FWF4 1079 aa11.22□□□□□ -0.61
LDLR-208ENST00000558518 UBE2UQ5VVX9 321 aa11.22□□□□□ -0.61
LDLR-208ENST00000558518 TERB1Q8NA31 727 aa11.22□□□□□ -0.61
LDLR-208ENST00000558518 OR2T12Q8NG77 320 aa11.22□□□□□ -0.61
LDLR-208ENST00000558518 MYLPFQ96A32 169 aa11.22□□□□□ -0.61
LDLR-208ENST00000558518 ZNF347Q96SE7 839 aa11.22□□□□□ -0.61
LDLR-208ENST00000558518 ASPSCR1Q9BZE9 553 aa11.22□□□□□ -0.61
LDLR-208ENST00000558518 ATP13A3Q9H7F0 1226 aa11.22□□□□□ -0.61
LDLR-208ENST00000558518 ABI2Q9NYB9 513 aaPredicted RBP11.22□□□□□ -0.61
LDLR-208ENST00000558518 TFECO14948 347 aaPredicted RBP11.22□□□□□ -0.61
LDLR-208ENST00000558518 MAFKO60675 156 aa11.22□□□□□ -0.61
LDLR-208ENST00000558518 BMP4P12644 408 aa11.22□□□□□ -0.61
LDLR-208ENST00000558518 CRHBPP24387 322 aa11.22□□□□□ -0.61
LDLR-208ENST00000558518 HRH2P25021 359 aa11.22□□□□□ -0.61
LDLR-208ENST00000558518 CASP9P55211 416 aa11.22□□□□□ -0.61
LDLR-208ENST00000558518 DNAJB13P59910 316 aa11.22□□□□□ -0.61
LDLR-208ENST00000558518 ARHGAP1Q07960 439 aa11.22□□□□□ -0.61
LDLR-208ENST00000558518 PRKG2Q13237 762 aa11.22□□□□□ -0.61
LDLR-208ENST00000558518 TP53BP2Q13625 1128 aa11.22□□□□□ -0.61
LDLR-208ENST00000558518 DALRD3Q5D0E6 543 aaKnown RBP11.22□□□□□ -0.61
LDLR-208ENST00000558518 CCDC80Q76M96 950 aa11.22□□□□□ -0.61
LDLR-208ENST00000558518 CFAP52Q8N1V2 620 aa11.22□□□□□ -0.61
LDLR-208ENST00000558518 SCML4Q8N228 414 aa11.22□□□□□ -0.61
LDLR-208ENST00000558518 PACRGLQ8N7B6 248 aa11.22□□□□□ -0.61
LDLR-208ENST00000558518 SCAIQ8N9R8 606 aa11.22□□□□□ -0.61
LDLR-208ENST00000558518 ZMIZ2Q8NF64 920 aa11.22□□□□□ -0.61
LDLR-208ENST00000558518 MCFD2Q8NI22 146 aa11.22□□□□□ -0.61
LDLR-208ENST00000558518 GIPC2Q8TF65 315 aa11.22□□□□□ -0.61
LDLR-208ENST00000558518 ZHX1-C8orf76Q96EF9 292 aa11.22□□□□□ -0.61
LDLR-208ENST00000558518 SLC47A1Q96FL8 570 aa11.22□□□□□ -0.61
LDLR-208ENST00000558518 HMCESQ96FZ2 354 aa11.22□□□□□ -0.61
LDLR-208ENST00000558518 MAF1Q9H063 256 aa11.22□□□□□ -0.61
LDLR-208ENST00000558518 FAM118AQ9NWS6 357 aa11.22□□□□□ -0.61
LDLR-208ENST00000558518 BOLA1Q9Y3E2 137 aa11.22□□□□□ -0.61
LDLR-208ENST00000558518 BBIP1A8MTZ0 92 aa11.21□□□□□ -0.61
LDLR-208ENST00000558518 FAM155AB1AL88 458 aaPredicted RBP11.21□□□□□ -0.61
LDLR-208ENST00000558518 H0Y626 953 aa11.21□□□□□ -0.61
LDLR-208ENST00000558518 TAF4O00268 1085 aa11.21□□□□□ -0.61
LDLR-208ENST00000558518 NIPSNAP2O75323 286 aa11.21□□□□□ -0.61
LDLR-208ENST00000558518 TRIM16O95361 564 aa11.21□□□□□ -0.61
LDLR-208ENST00000558518 UGT2B4P06133 528 aa11.21□□□□□ -0.61
LDLR-208ENST00000558518 IL12AP29459 219 aa11.21□□□□□ -0.61
LDLR-208ENST00000558518 GDF5P43026 501 aa11.21□□□□□ -0.61
LDLR-208ENST00000558518 SLC26A2P50443 739 aa11.21□□□□□ -0.61
LDLR-208ENST00000558518 ALDH3A2P51648 485 aa11.21□□□□□ -0.61
LDLR-208ENST00000558518 TMBIM6P55061 237 aa11.21□□□□□ -0.61
LDLR-208ENST00000558518 EFEMP1Q12805 493 aa11.21□□□□□ -0.61
LDLR-208ENST00000558518 ZNF235Q14590 738 aa11.21□□□□□ -0.61
LDLR-208ENST00000558518 CATSPEREQ5SY80 951 aa11.21□□□□□ -0.61
LDLR-208ENST00000558518 KIAA0930Q6ICG6 404 aaPredicted RBP11.21□□□□□ -0.61
LDLR-208ENST00000558518 ANGPTL8Q6UXH0 198 aa11.21□□□□□ -0.61
LDLR-208ENST00000558518 LRRC8DQ7L1W4 858 aa11.21□□□□□ -0.61
LDLR-208ENST00000558518 SYVN1Q86TM6 617 aa11.21□□□□□ -0.61
LDLR-208ENST00000558518 SIDT2Q8NBJ9 832 aaKnown RBP11.21□□□□□ -0.61
LDLR-208ENST00000558518 ASB1Q9Y576 335 aa11.21□□□□□ -0.61
LDLR-208ENST00000558518 COL11A2P13942 1736 aaPredicted RBP11.21□□□□□ -0.61
LDLR-208ENST00000558518 NRCAMQ92823 1304 aa11.21□□□□□ -0.61
LDLR-208ENST00000558518 ZNF487B1APH4 448 aa11.21□□□□□ -0.61
LDLR-208ENST00000558518 PFDN6O15212 129 aa11.21□□□□□ -0.61
LDLR-208ENST00000558518 RAD51BO15315 384 aa11.21□□□□□ -0.61
LDLR-208ENST00000558518 RGS5O15539 181 aa11.21□□□□□ -0.61
LDLR-208ENST00000558518 PSMD3O43242 534 aa11.21□□□□□ -0.61
LDLR-208ENST00000558518 ECI2O75521 394 aa11.21□□□□□ -0.61
LDLR-208ENST00000558518 DNTTP04053 509 aa11.21□□□□□ -0.61
LDLR-208ENST00000558518 CAPN1P07384 714 aa11.21□□□□□ -0.61
LDLR-208ENST00000558518 SCNN1GP51170 649 aa11.21□□□□□ -0.61
LDLR-208ENST00000558518 NPTX1Q15818 432 aa11.21□□□□□ -0.61
LDLR-208ENST00000558518 DGUOKQ16854 277 aa11.21□□□□□ -0.61
LDLR-208ENST00000558518 TTC23Q5W5X9 447 aa11.21□□□□□ -0.61
LDLR-208ENST00000558518 XAF1Q6GPH4 301 aa11.21□□□□□ -0.61
LDLR-208ENST00000558518 ALDH16A1Q8IZ83 802 aa11.21□□□□□ -0.61
LDLR-208ENST00000558518 MINDY1Q8N5J2 469 aa11.21□□□□□ -0.61
LDLR-208ENST00000558518 MTMR14Q8NCE2 650 aa11.21□□□□□ -0.61
LDLR-208ENST00000558518 STARD8Q92502 1023 aa11.21□□□□□ -0.61
LDLR-208ENST00000558518 MAGED4Q96JG8 741 aa11.21□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms